Wall clock time and date at job start Sun Mar 29 2020 22:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46869 * 179.97438 * 3 2 1 5 5 C 1.37106 * 119.99702 * 264.14177 * 4 3 2 6 6 H 1.08000 * 119.99356 * 197.43350 * 5 4 3 7 7 C 1.38948 * 120.00197 * 17.42730 * 5 4 3 8 8 N 1.31414 * 119.99933 * 21.54298 * 7 5 4 9 9 Si 1.86796 * 119.99918 * 201.53601 * 7 5 4 10 10 H 1.48497 * 109.47340 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47064 * 120.00503 * 9 7 5 12 12 H 1.48499 * 109.47268 * 240.00249 * 9 7 5 13 13 C 1.34770 * 120.00064 * 84.14113 * 4 3 2 14 14 O 1.21303 * 119.99971 * 179.97438 * 13 4 3 15 15 C 1.50695 * 120.00195 * 359.97438 * 13 4 3 16 16 C 1.53005 * 109.47431 * 180.02562 * 15 13 4 17 17 N 1.46494 * 109.47069 * 179.97438 * 16 15 13 18 18 C 1.36346 * 125.63691 * 90.00479 * 17 16 15 19 19 C 1.34847 * 108.22032 * 179.97438 * 18 17 16 20 20 C 1.40891 * 107.41928 * 359.97438 * 19 18 17 21 21 C 1.34860 * 107.41439 * 359.97438 * 20 19 18 22 22 H 4.40643 * 5.51484 * 180.02562 * 4 1 2 23 23 H 1.09003 * 109.46835 * 59.97281 * 3 2 1 24 24 H 1.09000 * 109.46845 * 299.96997 * 3 2 1 25 25 H 0.96996 * 119.99556 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.47596 * 59.99825 * 15 13 4 27 27 H 1.09003 * 109.47062 * 299.99870 * 15 13 4 28 28 H 1.09001 * 109.47046 * 59.99863 * 16 15 13 29 29 H 1.09003 * 109.46846 * 299.99946 * 16 15 13 30 30 H 1.07999 * 125.88362 * 359.70551 * 18 17 16 31 31 H 1.07995 * 126.29018 * 179.97438 * 19 18 17 32 32 H 1.07992 * 126.29201 * 180.02562 * 20 19 18 33 33 H 1.07998 * 125.88713 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3821 -0.0006 5 6 3.4762 1.9876 -1.1821 6 1 4.0882 2.8774 -1.1752 7 6 3.0359 1.4564 -2.3882 8 7 1.9848 0.6681 -2.4143 9 14 3.9381 1.8630 -3.9725 10 1 5.0801 2.7642 -3.6746 11 1 4.4442 0.6105 -4.5894 12 1 3.0074 2.5370 -4.9131 13 6 3.2457 2.0577 1.1601 14 8 3.6499 3.2014 1.1596 15 6 2.8687 1.3923 2.4586 16 6 3.0872 2.3701 3.6150 17 7 2.7202 1.7235 4.8772 18 6 3.5604 1.0057 5.6759 19 6 2.8596 0.5719 6.7432 20 6 1.5385 1.0395 6.5986 21 6 1.4824 1.7417 5.4486 22 1 -1.0502 -0.0004 0.0002 23 1 3.0096 -0.5135 -0.8898 24 1 3.0096 -0.5126 0.8903 25 1 1.6778 0.2970 -3.2562 26 1 3.4889 0.5085 2.6076 27 1 1.8196 1.0985 2.4252 28 1 2.4666 3.2537 3.4659 29 1 4.1363 2.6644 3.6487 30 1 4.6058 0.8136 5.4842 31 1 3.2410 -0.0243 7.5589 32 1 0.7211 0.8678 7.2832 33 1 0.6077 2.2331 5.0489 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798804690.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:45 Heat of formation + Delta-G solvation = 82.975533 kcal Electronic energy + Delta-G solvation = -17203.931659 eV Core-core repulsion = 14426.016786 eV Total energy + Delta-G solvation = -2777.914874 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89312 -38.76481 -35.39914 -33.58470 -32.16652 -31.30144 -29.27217 -28.56987 -26.53304 -25.12239 -23.21806 -20.24734 -19.77553 -19.03092 -17.95425 -17.34456 -16.64829 -15.82401 -14.99123 -14.83844 -14.41955 -13.90311 -13.81984 -13.21744 -13.05627 -12.47301 -12.32861 -12.24912 -11.94586 -11.88272 -11.68215 -11.55402 -11.06915 -10.88207 -10.54531 -10.36955 -9.43837 -9.36048 -8.98457 -8.65225 -8.33952 -7.96890 -7.96473 -6.42061 -3.94897 2.50493 3.07512 3.17426 3.21922 3.23880 3.28375 3.58097 3.81797 3.97686 4.12314 4.83627 4.94607 5.07918 5.25048 5.27915 5.40254 5.41851 5.62418 5.67859 5.78387 5.85641 6.04435 6.17837 6.26819 6.44545 6.51654 6.66471 6.95570 7.19435 7.46926 7.48425 7.60990 7.93845 8.31726 8.73781 9.02824 9.25429 9.78166 10.58669 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036595 B = 0.005543 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.950859 B = 5050.051428 C = 5516.547211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.116 4.116 3 C 0.231 3.769 4 N -0.435 5.435 5 C -0.318 4.318 6 H 0.106 0.894 7 C 0.032 3.968 8 N -0.860 5.860 9 Si 0.921 3.079 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.451 3.549 14 O -0.587 6.587 15 C -0.146 4.146 16 C 0.123 3.877 17 N -0.442 5.442 18 C -0.016 4.016 19 C -0.210 4.210 20 C -0.210 4.210 21 C -0.013 4.013 22 H 0.200 0.800 23 H 0.111 0.889 24 H 0.062 0.938 25 H 0.269 0.731 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.158 0.842 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 -3.418 9.800 10.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.117 4.117 3 C 0.107 3.893 4 N -0.153 5.153 5 C -0.445 4.445 6 H 0.123 0.877 7 C -0.173 4.173 8 N -0.498 5.498 9 Si 0.748 3.252 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.239 3.761 14 O -0.473 6.473 15 C -0.187 4.187 16 C 0.002 3.998 17 N -0.117 5.117 18 C -0.146 4.146 19 C -0.234 4.234 20 C -0.235 4.235 21 C -0.144 4.144 22 H 0.217 0.783 23 H 0.128 0.872 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.175 0.825 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.150 -2.785 9.285 9.695 hybrid contribution -0.145 -0.055 -1.038 1.049 sum 0.005 -2.840 8.247 8.722 Atomic orbital electron populations 1.24301 0.95396 1.01799 1.06124 1.23136 0.94328 0.98612 0.95668 1.18278 0.84369 0.85035 1.01580 1.43710 1.55363 1.10306 1.05899 1.19719 1.30395 1.12776 0.81577 0.87655 1.25315 0.95101 0.97297 0.99541 1.70101 1.19613 1.32616 1.27424 0.85949 0.79735 0.78378 0.81169 1.19145 1.20533 1.20819 1.19770 0.84897 0.86662 0.84802 1.90537 1.51689 1.18094 1.86949 1.21890 1.03582 0.99378 0.93854 1.21609 1.03267 0.95268 0.79691 1.44382 1.08909 1.40311 1.18067 1.21841 0.96822 1.02019 0.93948 1.20822 0.94603 1.07691 1.00325 1.20826 0.97675 1.05821 0.99167 1.21864 0.88701 1.06947 0.96858 0.78313 0.87152 0.91977 0.92069 0.89897 0.89519 0.88711 0.88672 0.82497 0.85196 0.85188 0.82508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.25 19.25 29.55 0.57 -4.68 16 2 C -0.12 -2.55 10.87 -37.12 -0.40 -2.95 16 3 C 0.23 4.97 4.91 -6.83 -0.03 4.93 16 4 N -0.44 -10.62 2.60 -117.93 -0.31 -10.93 16 5 C -0.32 -8.49 9.33 -14.93 -0.14 -8.63 16 6 H 0.11 2.97 7.38 -52.49 -0.39 2.59 16 7 C 0.03 0.82 4.86 -17.47 -0.08 0.73 16 8 N -0.86 -22.11 9.48 55.50 0.53 -21.58 16 9 Si 0.92 19.97 29.60 -169.99 -5.03 14.94 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.45 10.38 7.56 -10.99 -0.08 10.30 16 14 O -0.59 -15.32 15.63 5.54 0.09 -15.24 16 15 C -0.15 -2.58 4.63 -27.88 -0.13 -2.71 16 16 C 0.12 1.95 5.38 -4.04 -0.02 1.93 16 17 N -0.44 -6.55 2.75 -117.12 -0.32 -6.87 16 18 C -0.02 -0.22 11.43 -16.75 -0.19 -0.41 16 19 C -0.21 -2.81 10.86 -39.78 -0.43 -3.25 16 20 C -0.21 -2.86 10.86 -39.78 -0.43 -3.29 16 21 C -0.01 -0.18 11.43 -16.75 -0.19 -0.38 16 22 H 0.20 3.30 7.80 -54.08 -0.42 2.88 16 23 H 0.11 2.51 6.44 -51.93 -0.33 2.17 16 24 H 0.06 1.12 6.69 -51.93 -0.35 0.77 16 25 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 26 H 0.08 1.33 7.41 -51.93 -0.39 0.95 16 27 H 0.09 1.55 7.50 -51.93 -0.39 1.16 16 28 H 0.09 1.55 8.10 -51.93 -0.42 1.12 16 29 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 30 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 292.74 15.07 4.41 4.41 Total: -1.00 -30.24 292.74 -6.14 -36.38 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -3.93 Total: 7.29 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.57 Total: -8.41 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: -0.10 Total: -39.38 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.09 Total: -15.24 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.24 -6.14 -36.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798804690.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.355 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds