Wall clock time and date at job start Sun Mar 29 2020 22:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46869 * 179.97438 * 3 2 1 5 5 C 1.37106 * 119.99702 * 264.14177 * 4 3 2 6 6 H 1.08000 * 119.99356 * 197.43350 * 5 4 3 7 7 C 1.38948 * 120.00197 * 17.42730 * 5 4 3 8 8 N 1.31414 * 119.99933 * 21.54298 * 7 5 4 9 9 Si 1.86796 * 119.99918 * 201.53601 * 7 5 4 10 10 H 1.48497 * 109.47340 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47064 * 120.00503 * 9 7 5 12 12 H 1.48499 * 109.47268 * 240.00249 * 9 7 5 13 13 C 1.34770 * 120.00064 * 84.14113 * 4 3 2 14 14 O 1.21303 * 119.99971 * 179.97438 * 13 4 3 15 15 C 1.50695 * 120.00195 * 359.97438 * 13 4 3 16 16 C 1.53005 * 109.47431 * 180.02562 * 15 13 4 17 17 N 1.46494 * 109.47069 * 179.97438 * 16 15 13 18 18 C 1.36346 * 125.63691 * 90.00479 * 17 16 15 19 19 C 1.34847 * 108.22032 * 179.97438 * 18 17 16 20 20 C 1.40891 * 107.41928 * 359.97438 * 19 18 17 21 21 C 1.34860 * 107.41439 * 359.97438 * 20 19 18 22 22 H 4.40643 * 5.51484 * 180.02562 * 4 1 2 23 23 H 1.09003 * 109.46835 * 59.97281 * 3 2 1 24 24 H 1.09000 * 109.46845 * 299.96997 * 3 2 1 25 25 H 0.96996 * 119.99556 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.47596 * 59.99825 * 15 13 4 27 27 H 1.09003 * 109.47062 * 299.99870 * 15 13 4 28 28 H 1.09001 * 109.47046 * 59.99863 * 16 15 13 29 29 H 1.09003 * 109.46846 * 299.99946 * 16 15 13 30 30 H 1.07999 * 125.88362 * 359.70551 * 18 17 16 31 31 H 1.07995 * 126.29018 * 179.97438 * 19 18 17 32 32 H 1.07992 * 126.29201 * 180.02562 * 20 19 18 33 33 H 1.07998 * 125.88713 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3821 -0.0006 5 6 3.4762 1.9876 -1.1821 6 1 4.0882 2.8774 -1.1752 7 6 3.0359 1.4564 -2.3882 8 7 1.9848 0.6681 -2.4143 9 14 3.9381 1.8630 -3.9725 10 1 5.0801 2.7642 -3.6746 11 1 4.4442 0.6105 -4.5894 12 1 3.0074 2.5370 -4.9131 13 6 3.2457 2.0577 1.1601 14 8 3.6499 3.2014 1.1596 15 6 2.8687 1.3923 2.4586 16 6 3.0872 2.3701 3.6150 17 7 2.7202 1.7235 4.8772 18 6 3.5604 1.0057 5.6759 19 6 2.8596 0.5719 6.7432 20 6 1.5385 1.0395 6.5986 21 6 1.4824 1.7417 5.4486 22 1 -1.0502 -0.0004 0.0002 23 1 3.0096 -0.5135 -0.8898 24 1 3.0096 -0.5126 0.8903 25 1 1.6778 0.2970 -3.2562 26 1 3.4889 0.5085 2.6076 27 1 1.8196 1.0985 2.4252 28 1 2.4666 3.2537 3.4659 29 1 4.1363 2.6644 3.6487 30 1 4.6058 0.8136 5.4842 31 1 3.2410 -0.0243 7.5589 32 1 0.7211 0.8678 7.2832 33 1 0.6077 2.2331 5.0489 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798804690.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:44 Heat of formation + Delta-G solvation = 67.069333 kcal Electronic energy + Delta-G solvation = -17204.621404 eV Core-core repulsion = 14426.016786 eV Total energy + Delta-G solvation = -2778.604619 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.98109 -40.54153 -37.22015 -34.94774 -33.96601 -33.06547 -30.61759 -29.59935 -28.27295 -26.82603 -24.71016 -21.29105 -21.01069 -20.59629 -19.72539 -18.69862 -18.33920 -17.44111 -16.53323 -16.53113 -16.08883 -15.35293 -15.21164 -14.52416 -14.42501 -14.08500 -13.81576 -13.79829 -13.48145 -13.10234 -13.02227 -12.86344 -12.74624 -12.49372 -12.21566 -12.13104 -11.21850 -11.12777 -10.69884 -10.42606 -9.87461 -9.48908 -9.01335 -8.35219 -5.95903 1.33476 1.41203 1.43902 1.55674 1.82616 2.00947 2.14176 2.21426 2.30656 2.36523 3.01881 3.20757 3.77843 3.83152 3.86000 4.03884 4.27678 4.36578 4.43948 4.53374 4.67750 4.78696 4.85126 4.87231 4.93927 5.39115 5.44906 5.45608 5.48454 6.01500 6.17331 6.39017 6.41921 6.52514 7.09881 7.11245 7.37561 7.91974 8.63466 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036595 B = 0.005543 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.950859 B = 5050.051428 C = 5516.547211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.156 4.156 3 C 0.233 3.767 4 N -0.448 5.448 5 C -0.353 4.353 6 H 0.078 0.922 7 C 0.004 3.996 8 N -0.871 5.871 9 Si 0.983 3.017 10 H -0.273 1.273 11 H -0.265 1.265 12 H -0.281 1.281 13 C 0.443 3.557 14 O -0.627 6.627 15 C -0.127 4.127 16 C 0.135 3.865 17 N -0.450 5.450 18 C -0.027 4.027 19 C -0.216 4.216 20 C -0.215 4.215 21 C -0.032 4.032 22 H 0.233 0.767 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.272 0.728 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.177 0.823 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 -4.530 10.415 11.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.157 4.157 3 C 0.111 3.889 4 N -0.166 5.166 5 C -0.480 4.480 6 H 0.096 0.904 7 C -0.200 4.200 8 N -0.508 5.508 9 Si 0.807 3.193 10 H -0.198 1.198 11 H -0.190 1.190 12 H -0.207 1.207 13 C 0.233 3.767 14 O -0.514 6.514 15 C -0.168 4.168 16 C 0.012 3.988 17 N -0.125 5.125 18 C -0.157 4.157 19 C -0.241 4.241 20 C -0.240 4.240 21 C -0.162 4.162 22 H 0.249 0.751 23 H 0.111 0.889 24 H 0.114 0.886 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.194 0.806 31 H 0.168 0.832 32 H 0.166 0.834 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.304 -3.934 9.920 10.676 hybrid contribution -0.071 0.285 -1.178 1.214 sum -0.375 -3.649 8.742 9.480 Atomic orbital electron populations 1.25165 0.96385 1.00098 1.04579 1.23438 0.95006 1.00156 0.97139 1.18316 0.84618 0.83582 1.02386 1.43907 1.55535 1.11456 1.05687 1.19616 1.31750 1.13192 0.83460 0.90438 1.25975 0.95362 0.96927 1.01714 1.70185 1.19836 1.32588 1.28211 0.85036 0.78286 0.78459 0.77478 1.19784 1.19022 1.20702 1.20633 0.83541 0.86379 0.86150 1.90502 1.53166 1.19983 1.87791 1.21727 1.03739 0.99923 0.91374 1.21358 1.03127 0.94476 0.79806 1.44346 1.09461 1.40939 1.17751 1.22297 0.97772 1.01712 0.93921 1.21177 0.94560 1.07603 1.00739 1.21170 0.98447 1.05220 0.99151 1.22223 0.88977 1.07589 0.97414 0.75082 0.88857 0.88581 0.91760 0.87806 0.89377 0.89646 0.88623 0.80623 0.83192 0.83394 0.81444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.48 19.25 74.32 1.43 -8.05 16 2 C -0.16 -6.69 10.87 31.13 0.34 -6.36 16 3 C 0.23 9.96 4.91 84.58 0.42 10.37 16 4 N -0.45 -22.15 2.60 -645.42 -1.68 -23.83 16 5 C -0.35 -19.34 9.33 84.04 0.78 -18.56 16 6 H 0.08 4.58 7.38 -2.91 -0.02 4.56 16 7 C 0.00 0.20 4.86 84.93 0.41 0.62 16 8 N -0.87 -44.52 9.48 21.66 0.21 -44.31 16 9 Si 0.98 41.09 29.60 68.60 2.03 43.12 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 12 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 13 C 0.44 20.62 7.56 87.66 0.66 21.28 16 14 O -0.63 -33.58 15.63 -3.10 -0.05 -33.63 16 15 C -0.13 -4.35 4.63 29.85 0.14 -4.22 16 16 C 0.13 4.16 5.38 86.38 0.46 4.63 16 17 N -0.45 -12.61 2.75 -524.47 -1.44 -14.05 16 18 C -0.03 -0.70 11.43 83.21 0.95 0.26 16 19 C -0.22 -5.28 10.86 22.14 0.24 -5.04 16 20 C -0.22 -5.38 10.86 22.14 0.24 -5.14 16 21 C -0.03 -0.87 11.43 83.22 0.95 0.09 16 22 H 0.23 6.98 7.80 -4.41 -0.03 6.95 16 23 H 0.09 4.26 6.44 -2.39 -0.02 4.24 16 24 H 0.10 3.32 6.69 -2.39 -0.02 3.31 16 25 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 26 H 0.10 3.12 7.41 -2.39 -0.02 3.11 16 27 H 0.09 3.04 7.50 -2.39 -0.02 3.02 16 28 H 0.09 2.79 8.10 -2.39 -0.02 2.77 16 29 H 0.10 2.94 8.10 -2.39 -0.02 2.92 16 30 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 33 H 0.17 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -64.87 292.74 7.19 -57.68 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 1.10 Total: 25.14 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 7.03 Total: -10.12 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -2.91 Total: -82.19 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.05 Total: -33.63 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -64.87 7.19 -57.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798804690.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.745 kcal (2) G-P(sol) polarization free energy of solvation -64.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds