Wall clock time and date at job start Sun Mar 29 2020 22:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00389 * 2 1 4 4 H 1.48506 * 109.46831 * 270.00460 * 3 2 1 5 5 H 1.48500 * 109.47066 * 30.00094 * 3 2 1 6 6 H 1.48492 * 109.47002 * 150.00503 * 3 2 1 7 7 C 1.37882 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99947 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99853 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47296 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99638 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99942 * 180.02562 * 11 10 9 14 14 C 1.46568 * 125.01371 * 179.97438 * 13 11 10 15 15 C 1.53729 * 105.19445 * 179.97438 * 14 13 11 16 16 C 1.51328 * 104.63437 * 0.02562 * 15 14 13 17 17 N 1.32034 * 130.72427 * 180.02562 * 16 15 14 18 18 C 1.31761 * 121.95025 * 179.97438 * 17 16 15 19 19 C 1.38261 * 120.70065 * 0.02562 * 18 17 16 20 20 C 1.38318 * 119.29062 * 359.95832 * 19 18 17 21 21 C 1.38539 * 108.38064 * 0.02562 * 16 15 14 22 22 H 0.97006 * 119.99582 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47120 * 60.00436 * 9 7 2 24 24 H 1.09001 * 109.47413 * 300.00413 * 9 7 2 25 25 H 1.09005 * 109.47153 * 60.00560 * 10 9 7 26 26 H 1.09001 * 109.47228 * 300.00459 * 10 9 7 27 27 H 1.09005 * 110.29456 * 298.92792 * 14 13 11 28 28 H 1.08996 * 110.29797 * 60.96511 * 14 13 11 29 29 H 1.09004 * 110.40017 * 241.20904 * 15 14 13 30 30 H 1.08999 * 110.40540 * 118.78781 * 15 14 13 31 31 H 1.08007 * 119.65396 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.36037 * 179.97438 * 19 18 17 33 33 H 1.07996 * 120.68505 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 6 5.5284 -2.6369 -0.0022 12 8 6.1348 -1.5865 -0.0018 13 7 6.2022 -3.8041 -0.0037 14 6 7.6622 -3.9323 -0.0043 15 6 7.9338 -5.4454 -0.0053 16 6 6.5602 -6.0804 -0.0058 17 7 6.1982 -7.3502 -0.0063 18 6 4.9318 -7.7141 -0.0062 19 6 3.9250 -6.7666 -0.0061 20 6 4.2590 -5.4243 -0.0053 21 6 5.6120 -5.0704 -0.0058 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6807 0.8889 24 1 3.8745 -0.6802 -0.8911 25 1 3.6577 -3.1500 -0.8926 26 1 3.6583 -3.1512 0.8875 27 1 8.0818 -3.4718 -0.8988 28 1 8.0826 -3.4721 0.8898 29 1 8.4856 -5.7330 0.8896 30 1 8.4848 -5.7321 -0.9011 31 1 4.6775 -8.7639 -0.0061 32 1 2.8888 -7.0711 -0.0065 33 1 3.4908 -4.6653 -0.0049 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812536293.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:56 Heat of formation + Delta-G solvation = 7.749599 kcal Electronic energy + Delta-G solvation = -17271.386021 eV Core-core repulsion = 14490.209105 eV Total energy + Delta-G solvation = -2781.176915 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.42569 -39.13262 -36.76985 -33.98976 -33.12643 -31.34183 -30.66702 -29.64610 -26.51423 -24.04280 -23.63067 -22.26146 -20.58060 -19.74232 -17.51965 -16.99770 -16.51650 -16.40478 -16.07791 -15.07502 -14.78710 -14.23596 -14.03111 -13.62343 -13.32348 -12.94994 -12.89671 -12.53179 -12.42583 -12.25510 -11.96104 -11.40059 -11.07740 -10.75396 -10.26991 -10.19226 -9.92329 -9.63539 -9.60097 -9.43779 -9.26819 -8.58258 -7.96451 -6.10311 -4.10121 0.96403 1.17939 2.71266 2.80429 3.32396 3.39486 3.48994 3.71267 3.87482 4.26233 4.44074 4.67480 4.68517 4.87516 4.95395 5.06772 5.24854 5.25964 5.39100 5.45327 5.62277 5.64952 5.79228 5.84778 5.86079 6.10019 6.20997 6.47409 6.58239 7.21428 7.28604 7.36489 7.67986 7.87501 8.15409 8.43009 8.90863 9.52021 11.02225 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031597 B = 0.005920 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.961179 B = 4728.772511 C = 5583.566645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.126 4.126 11 C 0.522 3.478 12 O -0.511 6.511 13 N -0.558 5.558 14 C 0.105 3.895 15 C -0.073 4.073 16 C 0.074 3.926 17 N -0.454 5.454 18 C 0.069 3.931 19 C -0.136 4.136 20 C -0.118 4.118 21 C 0.109 3.891 22 H 0.264 0.736 23 H 0.026 0.974 24 H 0.021 0.979 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.144 0.856 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.519 -14.037 0.018 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.092 0.908 9 C -0.038 4.038 10 C -0.165 4.165 11 C 0.314 3.686 12 O -0.384 6.384 13 N -0.282 5.282 14 C -0.018 4.018 15 C -0.111 4.111 16 C -0.067 4.067 17 N -0.162 5.162 18 C -0.089 4.089 19 C -0.156 4.156 20 C -0.146 4.146 21 C 0.010 3.990 22 H 0.074 0.926 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.177 0.823 32 H 0.161 0.839 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 13.346 -13.749 0.021 19.161 hybrid contribution -0.384 1.472 -0.029 1.522 sum 12.961 -12.277 -0.008 17.853 Atomic orbital electron populations 1.69905 1.06272 1.27090 1.50608 1.24952 0.94710 0.99207 0.94168 0.86811 0.80609 0.83430 0.78816 1.20153 1.21298 1.18590 1.21035 0.88919 0.94687 1.51920 0.90812 1.19435 0.96827 0.89615 0.97901 1.22063 0.87003 1.03978 1.03469 1.21674 0.91733 0.81189 0.74042 1.90693 1.70756 1.30083 1.46873 1.46188 1.07252 1.04281 1.70472 1.22078 0.79976 0.95872 1.03826 1.21057 0.93222 0.92085 1.04690 1.21185 0.95453 0.88162 1.01911 1.66732 1.20735 1.17580 1.11187 1.22549 0.86970 1.00118 0.99267 1.22005 1.01515 0.92576 0.99493 1.21856 0.94228 0.98093 1.00469 1.19298 0.94524 0.86130 0.99067 0.92598 0.95614 0.96074 0.88800 0.88780 0.89672 0.89657 0.88392 0.88398 0.82349 0.83859 0.82379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.53 -14.69 9.66 -34.44 -0.33 -15.02 16 8 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 9 C 0.00 0.00 3.33 -27.89 -0.09 -0.09 16 10 C -0.13 -2.42 3.47 -27.88 -0.10 -2.52 16 11 C 0.52 9.73 7.80 -10.98 -0.09 9.64 16 12 O -0.51 -11.10 16.27 5.55 0.09 -11.01 16 13 N -0.56 -8.48 3.13 -112.86 -0.35 -8.83 16 14 C 0.10 1.22 7.06 -3.63 -0.03 1.20 16 15 C -0.07 -0.71 6.94 -27.20 -0.19 -0.90 16 16 C 0.07 0.96 7.41 -82.09 -0.61 0.35 16 17 N -0.45 -5.80 10.35 -9.17 -0.09 -5.90 16 18 C 0.07 0.75 11.19 -17.57 -0.20 0.55 16 19 C -0.14 -1.46 10.09 -39.54 -0.40 -1.86 16 20 C -0.12 -1.56 8.96 -38.95 -0.35 -1.91 16 21 C 0.11 1.54 6.60 -83.55 -0.55 0.98 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 24 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 25 H 0.09 1.68 6.92 -51.93 -0.36 1.32 16 26 H 0.09 1.68 6.93 -51.93 -0.36 1.32 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.16 2.15 4.36 -52.49 -0.23 1.92 16 LS Contribution 277.80 15.07 4.19 4.19 Total: -1.00 -33.56 277.80 -6.92 -40.48 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -3.83 Total: -2.22 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -3.02 Total: -7.61 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.33 Total: -41.31 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.56 -6.92 -40.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812536293.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.234 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds