Wall clock time and date at job start Sun Mar 29 2020 22:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00389 * 2 1 4 4 H 1.48506 * 109.46831 * 270.00460 * 3 2 1 5 5 H 1.48500 * 109.47066 * 30.00094 * 3 2 1 6 6 H 1.48492 * 109.47002 * 150.00503 * 3 2 1 7 7 C 1.37882 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99947 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99853 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47296 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99638 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99942 * 180.02562 * 11 10 9 14 14 C 1.46568 * 125.01371 * 179.97438 * 13 11 10 15 15 C 1.53729 * 105.19445 * 179.97438 * 14 13 11 16 16 C 1.51328 * 104.63437 * 0.02562 * 15 14 13 17 17 N 1.32034 * 130.72427 * 180.02562 * 16 15 14 18 18 C 1.31761 * 121.95025 * 179.97438 * 17 16 15 19 19 C 1.38261 * 120.70065 * 0.02562 * 18 17 16 20 20 C 1.38318 * 119.29062 * 359.95832 * 19 18 17 21 21 C 1.38539 * 108.38064 * 0.02562 * 16 15 14 22 22 H 0.97006 * 119.99582 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47120 * 60.00436 * 9 7 2 24 24 H 1.09001 * 109.47413 * 300.00413 * 9 7 2 25 25 H 1.09005 * 109.47153 * 60.00560 * 10 9 7 26 26 H 1.09001 * 109.47228 * 300.00459 * 10 9 7 27 27 H 1.09005 * 110.29456 * 298.92792 * 14 13 11 28 28 H 1.08996 * 110.29797 * 60.96511 * 14 13 11 29 29 H 1.09004 * 110.40017 * 241.20904 * 15 14 13 30 30 H 1.08999 * 110.40540 * 118.78781 * 15 14 13 31 31 H 1.08007 * 119.65396 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.36037 * 179.97438 * 19 18 17 33 33 H 1.07996 * 120.68505 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 6 5.5284 -2.6369 -0.0022 12 8 6.1348 -1.5865 -0.0018 13 7 6.2022 -3.8041 -0.0037 14 6 7.6622 -3.9323 -0.0043 15 6 7.9338 -5.4454 -0.0053 16 6 6.5602 -6.0804 -0.0058 17 7 6.1982 -7.3502 -0.0063 18 6 4.9318 -7.7141 -0.0062 19 6 3.9250 -6.7666 -0.0061 20 6 4.2590 -5.4243 -0.0053 21 6 5.6120 -5.0704 -0.0058 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6807 0.8889 24 1 3.8745 -0.6802 -0.8911 25 1 3.6577 -3.1500 -0.8926 26 1 3.6583 -3.1512 0.8875 27 1 8.0818 -3.4718 -0.8988 28 1 8.0826 -3.4721 0.8898 29 1 8.4856 -5.7330 0.8896 30 1 8.4848 -5.7321 -0.9011 31 1 4.6775 -8.7639 -0.0061 32 1 2.8888 -7.0711 -0.0065 33 1 3.4908 -4.6653 -0.0049 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812536293.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:56 Heat of formation + Delta-G solvation = -14.242897 kcal Electronic energy + Delta-G solvation = -17272.339687 eV Core-core repulsion = 14490.209105 eV Total energy + Delta-G solvation = -2782.130581 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.48580 -40.39281 -37.88674 -35.76120 -34.50047 -33.13926 -31.74170 -30.61001 -28.28856 -25.09752 -24.81478 -23.48561 -22.06629 -21.03165 -19.28585 -18.16555 -17.85770 -17.62794 -17.09870 -16.39532 -16.09841 -16.02557 -15.45361 -14.78833 -14.67512 -14.36432 -14.30385 -13.91227 -13.35160 -13.23539 -13.06085 -13.03506 -12.93083 -12.14279 -12.08966 -11.84376 -11.70823 -11.46005 -11.15375 -10.80726 -10.54400 -10.42234 -9.00645 -8.33982 -6.37571 -0.00949 0.21011 1.31609 1.34079 1.44530 1.47908 1.57007 2.32581 2.79138 2.98982 3.01621 3.25050 3.61187 3.76672 4.01749 4.06225 4.09112 4.17897 4.26463 4.31911 4.51711 4.56988 4.78095 4.88752 4.89432 4.91128 5.16232 5.21162 5.27835 5.31649 5.54369 5.66217 6.13467 6.20303 6.66456 6.80143 6.96098 7.27868 8.81344 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031597 B = 0.005920 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.961179 B = 4728.772511 C = 5583.566645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.018 3.982 3 Si 0.935 3.065 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.005 3.995 10 C -0.117 4.117 11 C 0.524 3.476 12 O -0.552 6.552 13 N -0.555 5.555 14 C 0.098 3.902 15 C -0.063 4.063 16 C 0.074 3.926 17 N -0.470 5.470 18 C 0.078 3.922 19 C -0.134 4.134 20 C -0.130 4.130 21 C 0.076 3.924 22 H 0.268 0.732 23 H 0.013 0.987 24 H 0.012 0.988 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.195 0.805 32 H 0.171 0.829 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.894 -15.639 -0.021 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.181 4.181 3 Si 0.760 3.240 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.072 0.928 9 C -0.033 4.033 10 C -0.156 4.156 11 C 0.316 3.684 12 O -0.429 6.429 13 N -0.278 5.278 14 C -0.023 4.023 15 C -0.101 4.101 16 C -0.067 4.067 17 N -0.179 5.179 18 C -0.080 4.080 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.022 4.022 22 H 0.077 0.923 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.211 0.789 32 H 0.189 0.811 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.734 -15.413 -0.019 21.323 hybrid contribution -0.871 1.752 -0.016 1.957 sum 13.863 -13.662 -0.035 19.464 Atomic orbital electron populations 1.70013 1.07720 1.28161 1.52143 1.25754 0.95466 1.02707 0.94135 0.85877 0.79303 0.79657 0.79205 1.19310 1.20277 1.18563 1.21337 0.90775 0.93920 1.50773 0.92831 1.19273 0.94494 0.92833 0.96739 1.21868 0.88298 1.00797 1.04662 1.21262 0.91284 0.81751 0.74101 1.90668 1.71244 1.31568 1.49431 1.46003 1.08737 1.03694 1.69370 1.22355 0.77826 0.97620 1.04504 1.21138 0.92141 0.90041 1.06739 1.21598 0.96473 0.87965 1.00685 1.66866 1.21754 1.17279 1.12025 1.23210 0.86275 1.01785 0.96739 1.22329 1.03142 0.91465 0.98427 1.21975 0.93874 0.99161 1.00847 1.19515 0.95311 0.85840 1.01567 0.92290 0.96825 0.96952 0.87651 0.87680 0.89051 0.89056 0.86275 0.86275 0.78861 0.81149 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 2 C 0.02 1.03 5.47 84.66 0.46 1.49 16 3 Si 0.94 45.97 27.47 68.60 1.88 47.85 16 4 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.26 -12.75 6.54 99.48 0.65 -12.10 16 7 C -0.53 -30.02 9.66 25.60 0.25 -29.78 16 8 H 0.05 3.17 7.99 -2.91 -0.02 3.14 16 9 C 0.00 0.22 3.33 29.85 0.10 0.32 16 10 C -0.12 -4.54 3.47 29.85 0.10 -4.44 16 11 C 0.52 19.55 7.80 87.66 0.68 20.23 16 12 O -0.55 -24.19 16.27 -3.05 -0.05 -24.24 16 13 N -0.55 -16.41 3.13 -629.35 -1.97 -18.38 16 14 C 0.10 2.14 7.06 86.61 0.61 2.75 16 15 C -0.06 -1.06 6.94 30.29 0.21 -0.85 16 16 C 0.07 1.72 7.41 42.80 0.32 2.04 16 17 N -0.47 -10.68 10.35 -182.93 -1.89 -12.57 16 18 C 0.08 1.42 11.19 84.71 0.95 2.37 16 19 C -0.13 -2.55 10.09 22.29 0.23 -2.33 16 20 C -0.13 -3.29 8.96 22.68 0.20 -3.08 16 21 C 0.08 2.03 6.60 38.35 0.25 2.28 16 22 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 23 H 0.01 0.69 7.16 -2.38 -0.02 0.67 16 24 H 0.01 0.62 7.53 -2.39 -0.02 0.60 16 25 H 0.11 3.79 6.92 -2.38 -0.02 3.77 16 26 H 0.11 3.79 6.93 -2.39 -0.02 3.77 16 27 H 0.09 1.87 8.14 -2.38 -0.02 1.86 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.19 2.06 8.06 -2.91 -0.02 2.03 16 32 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.15 3.96 4.36 -2.91 -0.01 3.95 16 Total: -1.00 -72.61 277.80 3.70 -68.91 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.07 Total: 5.05 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 4.37 Total: -8.99 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -3.56 Total: -88.59 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.05 Total: -24.24 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.88 Total: 47.85 kcal Total: -72.61 3.70 -68.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812536293.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.663 kcal (2) G-P(sol) polarization free energy of solvation -72.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds