Wall clock time and date at job start Sun Mar 29 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39626 * 120.14996 * 296.66589 * 3 2 1 5 5 C 1.37947 * 119.84448 * 179.72123 * 4 3 2 6 6 C 1.38362 * 120.14934 * 0.26455 * 5 4 3 7 7 C 1.50708 * 119.84648 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46915 * 25.00142 * 7 6 5 9 9 O 1.42901 * 109.46832 * 144.99756 * 7 6 5 10 10 C 1.52991 * 109.47298 * 265.00075 * 7 6 5 11 11 N 1.46911 * 109.47175 * 180.02562 * 10 7 6 12 12 C 1.46897 * 111.00044 * 179.97438 * 11 10 7 13 13 C 1.50701 * 109.46806 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00353 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99404 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00576 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99519 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47116 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46912 * 120.00125 * 17 15 13 20 20 H 1.48498 * 109.47230 * 240.00312 * 17 15 13 21 21 C 1.38361 * 120.31099 * 0.02562 * 6 5 4 22 22 C 1.37949 * 120.14316 * 0.02562 * 21 6 5 23 23 H 1.08002 * 120.08162 * 0.02562 * 4 3 2 24 24 H 1.07999 * 119.92426 * 180.27702 * 5 4 3 25 25 H 0.96700 * 113.99822 * 60.00428 * 9 7 6 26 26 H 1.08998 * 109.47468 * 299.99642 * 10 7 6 27 27 H 1.09004 * 109.47526 * 60.00150 * 10 7 6 28 28 H 1.00902 * 110.99512 * 56.04255 * 11 10 7 29 29 H 1.08999 * 109.47222 * 300.00329 * 12 11 10 30 30 H 1.08998 * 109.46990 * 59.99794 * 12 11 10 31 31 H 0.97000 * 120.00449 * 179.97438 * 16 15 13 32 32 H 1.07993 * 119.93080 * 179.97438 * 21 6 5 33 33 H 1.08002 * 120.07174 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.5409 1.0789 5 6 4.6490 -0.5422 1.0698 6 6 5.3373 -0.0035 -0.0028 7 6 6.8443 -0.0091 -0.0060 8 1 7.2060 -0.8181 0.6287 9 8 7.3171 -0.2030 -1.3406 10 6 7.3604 1.3283 0.5286 11 7 8.8295 1.3231 0.5250 12 6 9.3617 2.5947 1.0326 13 6 10.8680 2.5517 1.0145 14 1 11.3788 1.6684 0.6608 15 6 11.5939 3.6406 1.4485 16 7 10.9719 4.7165 1.8787 17 14 13.4610 3.5877 1.4253 18 1 13.9125 2.2742 0.8997 19 1 13.9762 4.6731 0.5526 20 1 13.9786 3.7738 2.8047 21 6 4.6485 0.5401 -1.0726 22 6 3.2690 0.5489 -1.0759 23 1 2.7335 -0.9622 1.9165 24 1 5.1929 -0.9648 1.9016 25 1 7.0330 0.4815 -1.9618 26 1 6.9988 2.1373 -0.1060 27 1 6.9998 1.4762 1.5466 28 1 9.1880 1.1236 -0.3969 29 1 9.0134 3.4122 0.4014 30 1 9.0153 2.7515 2.0541 31 1 11.4826 5.4824 2.1844 32 1 5.1919 0.9593 -1.9064 33 1 2.7325 0.9733 -1.9117 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819269989.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:33 Heat of formation + Delta-G solvation = -2.351716 kcal Electronic energy + Delta-G solvation = -16288.711446 eV Core-core repulsion = 13507.096505 eV Total energy + Delta-G solvation = -2781.614941 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.08562 -37.71320 -36.42146 -34.69820 -32.53032 -31.93482 -31.35397 -28.55124 -26.06591 -23.61678 -23.10891 -21.55541 -21.27512 -19.22575 -17.30990 -16.53708 -16.22170 -15.35955 -15.00210 -14.75034 -14.51706 -14.30658 -13.93247 -13.73846 -13.60797 -13.16028 -12.94153 -12.62338 -12.44599 -12.18241 -11.59835 -11.41157 -11.33237 -11.02449 -10.78848 -10.70448 -10.24384 -9.87278 -9.33643 -9.24331 -8.93971 -8.52127 -7.37901 -6.06739 -4.08762 0.45732 1.03990 2.38854 2.65623 3.29475 3.36922 3.42276 3.56434 3.59659 4.33896 4.41523 4.46357 4.52987 4.56774 5.00520 5.10997 5.27618 5.29449 5.32675 5.44509 5.56475 5.68053 5.90804 5.97001 6.01267 6.09616 6.36002 6.49544 7.16722 7.19880 7.35147 7.60470 7.74550 8.07325 8.33865 8.55775 9.01053 9.56608 11.04397 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.049781 B = 0.003564 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.329825 B = 7854.192708 C = 8053.909930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.259 3.741 3 C -0.040 4.040 4 C -0.066 4.066 5 C -0.110 4.110 6 C -0.074 4.074 7 C 0.143 3.857 8 H 0.119 0.881 9 O -0.549 6.549 10 C 0.034 3.966 11 N -0.686 5.686 12 C 0.194 3.806 13 C -0.514 4.514 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.114 4.114 22 C -0.066 4.066 23 H 0.133 0.867 24 H 0.138 0.862 25 H 0.370 0.630 26 H 0.023 0.977 27 H 0.075 0.925 28 H 0.336 0.664 29 H -0.014 1.014 30 H 0.027 0.973 31 H 0.261 0.739 32 H 0.132 0.868 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.304 -8.966 -4.778 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.057 4.057 3 C -0.043 4.043 4 C -0.087 4.087 5 C -0.128 4.128 6 C -0.076 4.076 7 C 0.083 3.917 8 H 0.137 0.863 9 O -0.354 6.354 10 C -0.096 4.096 11 N -0.317 5.317 12 C 0.067 3.933 13 C -0.553 4.553 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.132 4.132 22 C -0.086 4.086 23 H 0.151 0.849 24 H 0.156 0.844 25 H 0.217 0.783 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.154 0.846 29 H 0.004 0.996 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.150 0.850 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.706 -9.624 -3.821 17.986 hybrid contribution 0.874 1.335 -0.830 1.798 sum -13.832 -8.289 -4.650 16.783 Atomic orbital electron populations 1.81250 1.12130 1.08825 1.07757 1.25758 0.92697 0.93548 0.93648 1.15998 0.84182 1.06135 0.97985 1.21169 0.94235 0.96722 0.96570 1.21002 0.93428 0.99743 0.98615 1.21031 0.97679 0.94859 0.94043 1.21115 0.86276 0.99784 0.84510 0.86294 1.86672 1.76853 1.52939 1.18953 1.22527 0.92284 0.93838 1.00976 1.60606 1.02862 1.38050 1.30199 1.19572 0.95044 0.83559 0.95106 1.21220 0.90995 1.00417 1.42622 0.91795 1.24998 0.98981 0.95317 0.95326 1.69966 1.35557 1.04696 1.43570 0.86418 0.85170 0.78038 0.77658 1.19581 1.21094 1.20983 1.20851 0.93534 0.99983 0.98875 1.21117 0.94125 0.96658 0.96714 0.84876 0.84379 0.78284 0.95919 0.90641 0.84631 0.99645 0.95453 0.92935 0.84995 0.84958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.36 18.54 41.83 0.78 -4.58 16 2 C 0.26 2.69 15.33 -22.47 -0.34 2.34 16 3 C -0.04 -0.35 5.73 -106.93 -0.61 -0.96 16 4 C -0.07 -0.54 9.76 -39.17 -0.38 -0.92 16 5 C -0.11 -0.95 9.66 -39.64 -0.38 -1.33 16 6 C -0.07 -0.73 5.01 -104.53 -0.52 -1.25 16 7 C 0.14 1.71 3.48 -27.88 -0.10 1.62 16 8 H 0.12 1.48 8.05 -51.93 -0.42 1.06 16 9 O -0.55 -6.72 12.47 -35.23 -0.44 -7.16 16 10 C 0.03 0.53 5.37 -3.82 -0.02 0.51 16 11 N -0.69 -13.87 6.49 -115.06 -0.75 -14.62 16 12 C 0.19 4.92 5.44 -4.98 -0.03 4.89 16 13 C -0.51 -14.32 9.32 -34.44 -0.32 -14.64 16 14 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 17 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C -0.11 -0.97 9.31 -39.64 -0.37 -1.34 16 22 C -0.07 -0.53 9.76 -39.17 -0.38 -0.91 16 23 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 24 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 25 H 0.37 3.31 7.38 45.56 0.34 3.64 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.34 6.64 8.11 -39.29 -0.32 6.32 16 29 H -0.01 -0.38 8.14 -51.93 -0.42 -0.81 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.13 0.89 6.59 -52.49 -0.35 0.54 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 298.26 15.07 4.49 4.49 Total: -1.00 -31.86 298.26 -7.01 -38.87 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -3.25 Total: 2.89 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -3.56 Total: -10.54 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.76 Total: -44.91 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.44 Total: -7.16 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.86 -7.01 -38.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269989.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.517 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds