Wall clock time and date at job start Sun Mar 29 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39626 * 120.14996 * 296.66589 * 3 2 1 5 5 C 1.37947 * 119.84448 * 179.72123 * 4 3 2 6 6 C 1.38362 * 120.14934 * 0.26455 * 5 4 3 7 7 C 1.50708 * 119.84648 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46915 * 25.00142 * 7 6 5 9 9 O 1.42901 * 109.46832 * 144.99756 * 7 6 5 10 10 C 1.52991 * 109.47298 * 265.00075 * 7 6 5 11 11 N 1.46911 * 109.47175 * 180.02562 * 10 7 6 12 12 C 1.46897 * 111.00044 * 179.97438 * 11 10 7 13 13 C 1.50701 * 109.46806 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00353 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99404 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00576 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99519 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47116 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46912 * 120.00125 * 17 15 13 20 20 H 1.48498 * 109.47230 * 240.00312 * 17 15 13 21 21 C 1.38361 * 120.31099 * 0.02562 * 6 5 4 22 22 C 1.37949 * 120.14316 * 0.02562 * 21 6 5 23 23 H 1.08002 * 120.08162 * 0.02562 * 4 3 2 24 24 H 1.07999 * 119.92426 * 180.27702 * 5 4 3 25 25 H 0.96700 * 113.99822 * 60.00428 * 9 7 6 26 26 H 1.08998 * 109.47468 * 299.99642 * 10 7 6 27 27 H 1.09004 * 109.47526 * 60.00150 * 10 7 6 28 28 H 1.00902 * 110.99512 * 56.04255 * 11 10 7 29 29 H 1.08999 * 109.47222 * 300.00329 * 12 11 10 30 30 H 1.08998 * 109.46990 * 59.99794 * 12 11 10 31 31 H 0.97000 * 120.00449 * 179.97438 * 16 15 13 32 32 H 1.07993 * 119.93080 * 179.97438 * 21 6 5 33 33 H 1.08002 * 120.07174 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.5409 1.0789 5 6 4.6490 -0.5422 1.0698 6 6 5.3373 -0.0035 -0.0028 7 6 6.8443 -0.0091 -0.0060 8 1 7.2060 -0.8181 0.6287 9 8 7.3171 -0.2030 -1.3406 10 6 7.3604 1.3283 0.5286 11 7 8.8295 1.3231 0.5250 12 6 9.3617 2.5947 1.0326 13 6 10.8680 2.5517 1.0145 14 1 11.3788 1.6684 0.6608 15 6 11.5939 3.6406 1.4485 16 7 10.9719 4.7165 1.8787 17 14 13.4610 3.5877 1.4253 18 1 13.9125 2.2742 0.8997 19 1 13.9762 4.6731 0.5526 20 1 13.9786 3.7738 2.8047 21 6 4.6485 0.5401 -1.0726 22 6 3.2690 0.5489 -1.0759 23 1 2.7335 -0.9622 1.9165 24 1 5.1929 -0.9648 1.9016 25 1 7.0330 0.4815 -1.9618 26 1 6.9988 2.1373 -0.1060 27 1 6.9998 1.4762 1.5466 28 1 9.1880 1.1236 -0.3969 29 1 9.0134 3.4122 0.4014 30 1 9.0153 2.7515 2.0541 31 1 11.4826 5.4824 2.1844 32 1 5.1919 0.9593 -1.9064 33 1 2.7325 0.9733 -1.9117 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819269989.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:33 Heat of formation + Delta-G solvation = -25.109219 kcal Electronic energy + Delta-G solvation = -16289.698286 eV Core-core repulsion = 13507.096505 eV Total energy + Delta-G solvation = -2782.601780 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.84187 -38.70059 -37.35052 -36.31208 -34.37488 -32.90285 -32.00349 -30.01319 -27.64278 -24.89976 -23.76631 -23.27216 -22.38990 -19.92473 -18.70328 -18.05636 -17.18261 -16.83636 -16.23203 -15.94393 -15.54317 -15.14177 -15.00492 -14.91109 -14.56220 -14.38752 -14.19180 -13.83302 -13.53629 -13.28783 -13.05332 -12.94608 -12.60573 -12.58772 -12.14080 -12.04985 -11.91378 -11.40995 -10.94130 -10.65209 -9.96644 -9.76191 -9.08241 -8.21074 -6.31730 -0.27089 0.40880 1.43446 1.44272 1.57395 1.58140 1.87493 2.42129 2.81822 2.85065 3.12671 3.39017 3.55384 3.87622 3.96747 4.03976 4.17273 4.32120 4.40932 4.52492 4.75377 4.79555 4.94499 5.07302 5.14166 5.21697 5.29666 5.31860 5.58163 5.64062 5.83078 6.04264 6.40027 6.46481 6.73912 6.82088 6.93614 7.39547 8.90498 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.049781 B = 0.003564 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.329825 B = 7854.192708 C = 8053.909930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.281 3.719 3 C -0.046 4.046 4 C -0.062 4.062 5 C -0.113 4.113 6 C -0.085 4.085 7 C 0.159 3.841 8 H 0.115 0.885 9 O -0.561 6.561 10 C 0.034 3.966 11 N -0.686 5.686 12 C 0.208 3.792 13 C -0.534 4.534 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.971 3.029 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.279 1.279 21 C -0.117 4.117 22 C -0.062 4.062 23 H 0.152 0.848 24 H 0.151 0.849 25 H 0.384 0.616 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.340 0.660 29 H -0.038 1.038 30 H 0.000 1.000 31 H 0.265 0.735 32 H 0.150 0.850 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.968 -9.739 -5.337 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.033 4.033 3 C -0.049 4.049 4 C -0.083 4.083 5 C -0.131 4.131 6 C -0.086 4.086 7 C 0.100 3.900 8 H 0.133 0.867 9 O -0.368 6.368 10 C -0.096 4.096 11 N -0.318 5.318 12 C 0.080 3.920 13 C -0.573 4.573 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.796 3.204 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.205 1.205 21 C -0.135 4.135 22 C -0.082 4.082 23 H 0.170 0.830 24 H 0.168 0.832 25 H 0.234 0.766 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.158 0.842 29 H -0.020 1.020 30 H 0.019 0.981 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.390 -10.412 -4.398 18.299 hybrid contribution 0.719 1.568 -0.672 1.851 sum -13.672 -8.845 -5.070 17.054 Atomic orbital electron populations 1.81275 1.13384 1.10437 1.09216 1.25914 0.92765 0.92255 0.92357 1.16115 0.83306 1.06787 0.98734 1.21354 0.94026 0.96058 0.96833 1.21174 0.93757 0.99524 0.98669 1.20866 0.96161 0.96380 0.95242 1.20801 0.87767 0.97167 0.84303 0.86704 1.86641 1.77288 1.53726 1.19142 1.22624 0.89234 0.96482 1.01220 1.60447 1.05972 1.34947 1.30422 1.19209 0.94325 0.85131 0.93318 1.21590 0.92389 1.00569 1.42721 0.91802 1.25933 1.04220 0.94839 0.94703 1.70084 1.37623 1.05441 1.44292 0.85301 0.78821 0.78438 0.77839 1.18659 1.20350 1.20469 1.21060 0.93824 0.99561 0.99009 1.21318 0.93991 0.95968 0.96949 0.83043 0.83159 0.76631 0.95451 0.91127 0.84206 1.02021 0.98147 0.92637 0.83274 0.83083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.45 18.54 19.00 0.35 -11.09 16 2 C 0.28 5.45 15.33 88.34 1.35 6.81 16 3 C -0.05 -0.71 5.73 -21.36 -0.12 -0.84 16 4 C -0.06 -0.87 9.76 22.54 0.22 -0.65 16 5 C -0.11 -1.74 9.66 22.23 0.21 -1.52 16 6 C -0.08 -1.50 5.01 -19.80 -0.10 -1.60 16 7 C 0.16 3.61 3.48 29.85 0.10 3.71 16 8 H 0.12 2.70 8.05 -2.38 -0.02 2.68 16 9 O -0.56 -12.76 12.47 -148.98 -1.86 -14.61 16 10 C 0.03 1.04 5.37 86.30 0.46 1.51 16 11 N -0.69 -27.79 6.49 -517.93 -3.36 -31.15 16 12 C 0.21 10.80 5.44 85.56 0.47 11.26 16 13 C -0.53 -29.98 9.32 25.60 0.24 -29.74 16 14 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 15 C 0.00 0.07 5.46 84.66 0.46 0.53 16 16 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 17 Si 0.97 43.62 29.54 68.60 2.03 45.64 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 C -0.12 -1.71 9.31 22.23 0.21 -1.51 16 22 C -0.06 -0.85 9.76 22.54 0.22 -0.63 16 23 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 24 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 25 H 0.38 6.09 7.38 -74.06 -0.55 5.55 16 26 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 28 H 0.34 13.30 8.11 -89.69 -0.73 12.57 16 29 H -0.04 -2.10 8.14 -2.39 -0.02 -2.12 16 30 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.15 1.60 6.59 -2.91 -0.02 1.58 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -68.24 298.26 1.04 -67.20 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -0.13 Total: 11.96 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 3.73 Total: -12.66 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -2.72 Total: -97.53 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -1.86 Total: -14.61 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.24 1.04 -67.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269989.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.091 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds