Wall clock time and date at job start Sun Mar 29 2020 23:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47317 * 2 1 4 4 C 1.47196 * 109.47533 * 239.99768 * 2 1 3 5 5 N 2.60797 * 109.47425 * 240.00033 * 2 1 3 6 6 O 1.42902 * 109.47265 * 119.99894 * 2 1 3 7 7 C 1.36018 * 116.99732 * 275.01211 * 6 2 1 8 8 C 1.38501 * 120.08182 * 5.48483 * 7 6 2 9 9 C 1.38287 * 120.01692 * 179.97438 * 8 7 6 10 10 C 1.38254 * 120.17779 * 359.75088 * 9 8 7 11 11 C 1.38225 * 120.16279 * 0.50935 * 10 9 8 12 12 C 1.38725 * 119.97853 * 359.49059 * 11 10 9 13 13 N 1.39963 * 120.08867 * 180.23471 * 12 11 10 14 14 C 1.46503 * 120.00081 * 0.02562 * 13 12 11 15 15 C 1.50702 * 109.47185 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99702 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99698 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00411 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99719 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46670 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47116 * 119.99618 * 19 17 15 22 22 H 1.48502 * 109.46764 * 239.99739 * 19 17 15 23 23 H 1.09000 * 109.46894 * 60.00189 * 1 2 3 24 24 H 1.08999 * 109.46669 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47205 * 299.99730 * 1 2 3 26 26 H 1.07992 * 119.98849 * 359.96326 * 8 7 6 27 27 H 1.07993 * 119.90998 * 180.02562 * 9 8 7 28 28 H 1.07998 * 119.91848 * 180.26909 * 10 9 8 29 29 H 1.07996 * 120.00620 * 179.76740 * 11 10 9 30 30 H 0.96996 * 119.99922 * 179.97438 * 13 12 11 31 31 H 1.09003 * 109.46452 * 299.99978 * 14 13 12 32 32 H 1.08995 * 109.47229 * 59.99459 * 14 13 12 33 33 H 0.96999 * 120.00081 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0208 -0.6939 -1.2018 5 7 2.3995 -1.2294 -2.1294 6 8 2.0064 -0.6736 1.1668 7 6 2.1124 0.0633 2.3051 8 6 1.6599 1.3721 2.3296 9 6 1.7679 2.1198 3.4878 10 6 2.3223 1.5630 4.6254 11 6 2.7811 0.2593 4.6077 12 6 2.6760 -0.4969 3.4495 13 7 3.1354 -1.8189 3.4305 14 6 3.7276 -2.4060 4.6350 15 6 4.1381 -3.8279 4.3511 16 1 3.9739 -4.2520 3.3715 17 6 4.7223 -4.5877 5.3423 18 7 4.9218 -4.0714 6.5352 19 14 5.2305 -6.3506 4.9906 20 1 4.8994 -6.6897 3.5832 21 1 6.6928 -6.4963 5.2045 22 1 4.5027 -7.2672 5.9046 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.2229 1.8087 1.4438 27 1 1.4142 3.1400 3.5050 28 1 2.4005 2.1495 5.5289 29 1 3.2171 -0.1719 5.4967 30 1 3.0610 -2.3466 2.6200 31 1 4.6033 -1.8270 4.9284 32 1 2.9961 -2.3929 5.4429 33 1 5.3332 -4.6059 7.2324 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819467762.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:58 Heat of formation + Delta-G solvation = 17.524408 kcal Electronic energy + Delta-G solvation = -16862.618677 eV Core-core repulsion = 14081.865629 eV Total energy + Delta-G solvation = -2780.753048 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.19186 -37.82602 -36.30717 -34.98141 -32.70783 -31.89778 -29.73365 -28.93674 -26.24120 -24.86644 -23.19829 -21.69814 -20.93769 -18.32516 -18.20592 -16.85163 -15.76496 -15.56246 -15.34867 -14.67397 -14.47327 -14.07653 -13.63751 -13.47629 -13.10827 -12.96559 -12.85821 -12.72452 -12.30920 -12.02598 -12.01503 -11.61858 -11.17334 -11.01088 -10.93105 -10.87567 -10.61896 -10.12619 -9.50750 -9.37545 -8.54916 -8.17179 -6.45554 -6.21058 -4.25532 1.77067 2.06057 2.17000 2.54213 3.22757 3.30418 3.34785 3.36405 3.92042 4.25236 4.28122 4.51775 4.58749 4.74851 5.15128 5.16617 5.23498 5.38933 5.43747 5.61169 5.86352 5.88889 6.04883 6.26157 6.55035 6.71058 7.00805 7.09450 7.19051 7.28067 7.41546 7.49979 7.69003 7.94688 8.28292 8.67392 8.91175 9.40995 10.89636 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.006054 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.876715 B = 4623.714435 C = 5893.249501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.188 3.812 3 H 0.113 0.887 4 C 0.215 3.785 5 N -0.406 5.406 6 O -0.305 6.305 7 C 0.024 3.976 8 C -0.158 4.158 9 C -0.171 4.171 10 C -0.093 4.093 11 C -0.178 4.178 12 C 0.224 3.776 13 N -0.723 5.723 14 C 0.251 3.749 15 C -0.537 4.537 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.397 0.603 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.479 12.202 -7.507 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.128 3.872 3 H 0.131 0.869 4 C -0.104 4.104 5 N -0.083 5.083 6 O -0.219 6.219 7 C -0.024 4.024 8 C -0.178 4.178 9 C -0.192 4.192 10 C -0.112 4.112 11 C -0.202 4.202 12 C 0.114 3.886 13 N -0.346 5.346 14 C 0.130 3.870 15 C -0.575 4.575 16 H 0.081 0.919 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.729 3.271 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.207 1.207 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.150 0.850 30 H 0.231 0.769 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.676 11.009 -8.523 15.898 hybrid contribution 0.140 -0.804 -0.005 0.817 sum -7.535 10.204 -8.529 15.285 Atomic orbital electron populations 1.22343 0.92037 1.04738 1.04144 1.19274 0.94813 0.94879 0.78239 0.86939 1.28638 0.93402 0.93917 0.94437 1.81206 1.07782 1.07194 1.12167 1.86077 1.82913 1.37153 1.15721 1.18287 1.06714 0.91784 0.85583 1.20836 1.04438 0.93052 0.99448 1.20461 1.06007 0.99620 0.93142 1.20793 0.98014 0.94604 0.97836 1.20635 1.07401 0.94835 0.97337 1.17482 0.93183 0.86871 0.91096 1.45482 1.63882 1.08803 1.16419 1.19134 0.92720 0.93004 0.82182 1.21240 1.41127 0.96860 0.98316 0.91934 1.24909 0.95311 0.98918 0.94765 1.69945 1.42971 1.37099 1.02745 0.86375 0.78305 0.83865 0.78514 1.19638 1.20760 1.20747 0.90403 0.90542 0.89517 0.86033 0.86876 0.86605 0.84985 0.76923 0.96098 0.96044 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.13 37.16 0.34 -1.05 16 2 C 0.19 1.96 2.67 -29.52 -0.08 1.89 16 3 H 0.11 0.90 6.31 -51.93 -0.33 0.57 16 4 C 0.22 2.73 15.03 -20.76 -0.31 2.42 16 5 N -0.41 -6.12 18.54 42.15 0.78 -5.34 16 6 O -0.31 -4.50 9.01 -19.80 -0.18 -4.68 16 7 C 0.02 0.38 6.62 -39.08 -0.26 0.12 16 8 C -0.16 -1.99 8.25 -39.47 -0.33 -2.32 16 9 C -0.17 -2.18 10.04 -39.56 -0.40 -2.58 16 10 C -0.09 -1.35 10.04 -39.58 -0.40 -1.74 16 11 C -0.18 -3.15 9.31 -39.41 -0.37 -3.52 16 12 C 0.22 4.19 6.67 -83.56 -0.56 3.63 16 13 N -0.72 -15.54 5.72 -59.66 -0.34 -15.88 16 14 C 0.25 6.32 4.67 -5.19 -0.02 6.30 16 15 C -0.54 -14.68 9.28 -34.44 -0.32 -14.99 16 16 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 19 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.65 6.92 -51.93 -0.36 0.29 16 26 H 0.12 1.09 5.43 -52.49 -0.28 0.81 16 27 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.13 2.49 6.74 -52.49 -0.35 2.14 16 30 H 0.40 8.43 7.68 -40.82 -0.31 8.12 16 31 H 0.02 0.57 7.95 -51.93 -0.41 0.15 16 32 H 0.02 0.58 7.95 -51.93 -0.41 0.16 16 33 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 291.87 15.07 4.40 4.40 Total: -1.00 -30.07 291.87 -6.11 -36.18 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.69 Total: 4.15 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.80 Total: -10.18 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 1.18 Total: -45.95 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.18 Total: -4.68 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.07 -6.11 -36.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819467762.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.700 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds