Wall clock time and date at job start Sun Mar 29 2020 22:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38273 * 119.72367 * 2 1 4 4 C 1.37915 * 120.10055 * 179.97438 * 3 2 1 5 5 C 1.39579 * 119.76015 * 0.02562 * 4 3 2 6 6 C 1.47669 * 120.05045 * 179.97438 * 5 4 3 7 7 O 1.21504 * 119.99923 * 179.97438 * 6 5 4 8 8 O 1.34727 * 119.99782 * 359.95063 * 6 5 4 9 9 C 1.34853 * 116.99605 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00319 * 0.02562 * 9 8 6 11 11 C 1.38817 * 119.99905 * 180.02562 * 9 8 6 12 12 N 1.31416 * 119.99885 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00193 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47078 * 90.00056 * 13 11 9 15 15 H 1.48496 * 109.47627 * 210.00062 * 13 11 9 16 16 H 1.48506 * 109.47063 * 330.00407 * 13 11 9 17 17 C 1.39864 * 119.89712 * 359.95034 * 5 4 3 18 18 C 1.37953 * 119.75593 * 0.05239 * 17 5 4 19 19 C 1.51400 * 109.75990 * 179.97438 * 18 17 5 20 20 C 1.54341 * 105.17233 * 17.18891 * 19 18 17 21 21 C 1.51356 * 130.41052 * 180.02562 * 17 5 4 22 22 H 1.09002 * 109.46757 * 270.02023 * 1 2 3 23 23 H 1.08999 * 109.46747 * 30.01662 * 1 2 3 24 24 H 1.08996 * 109.47205 * 150.02047 * 1 2 3 25 25 H 1.08001 * 119.95331 * 359.97438 * 3 2 1 26 26 H 1.08004 * 120.12026 * 179.97438 * 4 3 2 27 27 H 0.97002 * 119.99438 * 180.02562 * 12 11 9 28 28 H 1.09004 * 110.29801 * 136.10689 * 19 18 17 29 29 H 1.08993 * 110.30940 * 258.26041 * 19 18 17 30 30 H 1.09002 * 110.83394 * 215.46827 * 20 19 18 31 31 H 1.09005 * 110.83392 * 91.89188 * 20 19 18 32 32 H 1.08997 * 110.30685 * 281.79552 * 21 17 5 33 33 H 1.09003 * 110.30476 * 43.94995 * 21 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1927 1.2008 0.0000 4 6 3.5718 1.2099 0.0005 5 6 4.2726 0.0028 0.0005 6 6 5.7493 0.0050 0.0005 7 8 6.3584 -1.0464 0.0010 8 8 6.4211 1.1728 -0.0005 9 6 7.7679 1.1042 -0.0010 10 1 8.2597 0.1427 -0.0009 11 6 8.5222 2.2696 -0.0015 12 7 7.9238 3.4396 -0.0009 13 14 10.3877 2.1747 -0.0014 14 1 10.8821 2.1489 -1.4015 15 1 10.9438 3.3607 0.6981 16 1 10.8205 0.9388 0.6991 17 6 3.5740 -1.2089 0.0010 18 6 2.1945 -1.2039 0.0004 19 6 1.6774 -2.6268 0.0005 20 6 2.8768 -3.4924 0.4415 21 6 4.0823 -2.6346 0.0017 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6474 2.1331 -0.0004 26 1 4.1076 2.1476 0.0001 27 1 8.4509 4.2539 -0.0017 28 1 0.8555 -2.7305 0.7090 29 1 1.3531 -2.9116 -1.0003 30 1 2.8740 -4.4514 -0.0767 31 1 2.8758 -3.6345 1.5222 32 1 4.4062 -2.9211 -0.9988 33 1 4.9025 -2.7434 0.7112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838101114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:00 Heat of formation + Delta-G solvation = -88.969826 kcal Electronic energy + Delta-G solvation = -17303.986545 eV Core-core repulsion = 14486.322809 eV Total energy + Delta-G solvation = -2817.663735 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.62655 -40.44242 -37.28098 -36.72948 -34.41057 -33.95920 -30.05021 -28.86937 -28.61276 -27.00784 -23.80473 -22.55302 -22.08603 -20.82678 -19.89866 -18.47267 -17.26076 -16.85180 -16.60130 -16.23559 -16.07735 -15.73176 -15.14232 -14.44404 -14.25925 -14.15360 -13.75210 -13.65813 -13.26604 -13.06057 -12.91413 -12.61581 -12.39463 -12.27857 -12.21516 -12.16427 -11.98267 -11.90512 -11.73087 -10.97954 -10.75051 -9.64307 -9.50908 -8.60387 -6.37959 -0.19965 0.35496 1.30404 1.34539 1.48721 1.77212 2.07943 2.70696 2.71691 2.99737 3.45690 3.63047 3.97011 4.10307 4.16287 4.18963 4.28659 4.38925 4.73697 4.77368 4.82990 4.87736 4.90851 4.94628 5.04574 5.08313 5.11620 5.22279 5.30099 5.33201 5.39571 5.56210 5.60670 5.76998 5.98925 6.57162 6.83891 7.70386 8.60749 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.034983 B = 0.005946 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.205246 B = 4707.758639 C = 5469.933679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.046 4.046 3 C -0.131 4.131 4 C -0.083 4.083 5 C -0.131 4.131 6 C 0.430 3.570 7 O -0.575 6.575 8 O -0.237 6.237 9 C -0.423 4.423 10 H 0.081 0.919 11 C -0.004 4.004 12 N -0.899 5.899 13 Si 1.022 2.978 14 H -0.258 1.258 15 H -0.256 1.256 16 H -0.264 1.264 17 C -0.060 4.060 18 C -0.114 4.114 19 C -0.067 4.067 20 C -0.111 4.111 21 C -0.085 4.085 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.159 0.841 26 H 0.117 0.883 27 H 0.281 0.719 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.030 -7.893 0.139 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.046 4.046 3 C -0.148 4.148 4 C -0.101 4.101 5 C -0.133 4.133 6 C 0.280 3.720 7 O -0.474 6.474 8 O -0.145 6.145 9 C -0.498 4.498 10 H 0.099 0.901 11 C -0.204 4.204 12 N -0.536 5.536 13 Si 0.840 3.160 14 H -0.183 1.183 15 H -0.180 1.180 16 H -0.188 1.188 17 C -0.060 4.060 18 C -0.114 4.114 19 C -0.104 4.104 20 C -0.149 4.149 21 C -0.122 4.122 22 H 0.107 0.893 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.177 0.823 26 H 0.135 0.865 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.831 -7.910 0.143 17.698 hybrid contribution 1.668 0.458 -0.035 1.730 sum -14.163 -7.453 0.109 16.005 Atomic orbital electron populations 1.20904 0.87440 1.04460 1.03837 1.20120 0.98369 0.90719 0.95406 1.21217 0.92103 0.99506 1.02001 1.21429 0.95818 0.96331 0.96547 1.19023 0.88126 0.95496 1.10608 1.21906 0.90062 0.82511 0.77518 1.90534 1.71162 1.33473 1.52226 1.83925 1.21871 1.32135 1.76566 1.21509 0.78104 0.95339 1.54880 0.90107 1.26630 1.06388 0.92942 0.94467 1.70065 1.38984 0.98340 1.46240 0.84581 0.72777 0.78999 0.79663 1.18262 1.18006 1.18805 1.20863 0.95307 0.93913 0.95931 1.20852 0.91881 0.97140 1.01535 1.21086 0.98430 0.87144 1.03727 1.22374 0.91947 0.98485 1.02048 1.21144 0.99358 0.89850 1.01822 0.89334 0.89939 0.89654 0.82298 0.86489 0.90969 0.87812 0.88308 0.87968 0.90443 0.90927 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.86 71.24 0.70 -0.93 16 2 C -0.05 -1.17 5.89 -19.76 -0.12 -1.28 16 3 C -0.13 -3.89 9.67 22.20 0.21 -3.67 16 4 C -0.08 -3.38 9.61 22.52 0.22 -3.16 16 5 C -0.13 -6.10 5.88 -20.07 -0.12 -6.22 16 6 C 0.43 24.79 7.83 70.31 0.55 25.34 16 7 O -0.57 -34.57 13.95 19.82 0.28 -34.30 16 8 O -0.24 -15.17 8.98 11.41 0.10 -15.07 16 9 C -0.42 -27.22 9.65 67.96 0.66 -26.56 16 10 H 0.08 5.27 6.86 -2.91 -0.02 5.25 16 11 C 0.00 -0.22 5.50 84.89 0.47 0.24 16 12 N -0.90 -54.80 13.67 21.64 0.30 -54.50 16 13 Si 1.02 44.91 29.55 68.60 2.03 46.93 16 14 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 15 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 16 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 17 C -0.06 -2.28 6.03 -19.33 -0.12 -2.40 16 18 C -0.11 -3.23 6.00 -19.62 -0.12 -3.35 16 19 C -0.07 -1.29 6.09 30.53 0.19 -1.10 16 20 C -0.11 -2.43 7.08 31.51 0.22 -2.21 16 21 C -0.08 -2.90 5.58 30.52 0.17 -2.73 16 22 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 24 H 0.08 0.99 7.66 -2.39 -0.02 0.97 16 25 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 26 H 0.12 5.24 7.60 -2.91 -0.02 5.22 16 27 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.06 2.25 7.19 -2.39 -0.02 2.23 16 Total: -1.00 -79.35 284.75 6.73 -72.61 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.11 Total: 12.34 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 2.92 Total: -28.02 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.30 Total: -54.50 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: 0.38 Total: -49.37 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -79.35 6.73 -72.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838101114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.356 kcal (2) G-P(sol) polarization free energy of solvation -79.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds