Wall clock time and date at job start Sun Mar 29 2020 22:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86803 * 119.99647 * 2 1 4 4 H 1.48499 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47101 * 299.99652 * 3 2 1 6 6 H 1.48504 * 109.47371 * 59.99658 * 3 2 1 7 7 C 1.38746 * 120.00531 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00625 * 180.02562 * 7 2 1 9 9 O 1.34922 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.34312 * 117.00122 * 179.97438 * 9 7 2 11 11 O 1.21206 * 119.99886 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99896 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.70719 * 59.46937 * 12 10 9 14 14 C 1.53328 * 109.67937 * 180.02562 * 12 10 9 15 15 C 1.52736 * 108.39312 * 189.56780 * 14 12 10 16 16 C 1.50626 * 110.59756 * 308.90039 * 15 14 12 17 17 C 1.38903 * 117.75514 * 197.66635 * 16 15 14 18 18 C 1.37942 * 120.54495 * 180.31840 * 17 16 15 19 19 C 1.38263 * 119.77097 * 0.10509 * 18 17 16 20 20 C 1.37936 * 119.77040 * 359.85921 * 19 18 17 21 21 C 1.37663 * 122.55848 * 18.14364 * 16 15 14 22 22 C 1.50642 * 122.55804 * 358.55751 * 21 16 15 23 23 H 0.97000 * 120.00931 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.67999 * 69.84560 * 14 12 10 25 25 H 1.08995 * 109.68058 * 309.29394 * 14 12 10 26 26 H 1.09003 * 109.24779 * 188.61631 * 15 14 12 27 27 H 1.08994 * 109.22068 * 69.17213 * 15 14 12 28 28 H 1.07998 * 119.72836 * 0.34312 * 17 16 15 29 29 H 1.08001 * 120.11511 * 180.02562 * 18 17 16 30 30 H 1.07995 * 120.11481 * 179.83674 * 19 18 17 31 31 H 1.08002 * 119.72350 * 179.97438 * 20 19 18 32 32 H 1.09000 * 109.46702 * 258.02500 * 22 21 16 33 33 H 1.08991 * 109.10944 * 138.55376 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3466 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3966 1.2125 7 6 2.0082 -1.2015 0.0005 8 1 3.0882 -1.2015 0.0010 9 8 1.3337 -2.3700 0.0005 10 6 2.0652 -3.4964 0.0005 11 8 3.2756 -3.4329 0.0010 12 6 1.3811 -4.8392 0.0011 13 1 0.7494 -4.9302 -0.8825 14 6 2.4331 -5.9546 0.0016 15 6 1.7241 -7.2859 -0.2387 16 6 0.5685 -7.4502 0.7134 17 6 0.0554 -8.7284 0.8934 18 6 -1.0067 -8.9437 1.7468 19 6 -1.5674 -7.8787 2.4274 20 6 -1.0588 -6.6088 2.2505 21 6 0.0097 -6.3897 1.3903 22 6 0.5276 -4.9812 1.2598 23 1 -0.4851 0.8400 -0.0004 24 1 2.9422 -5.9786 0.9652 25 1 3.1578 -5.7761 -0.7927 26 1 2.4314 -8.1018 -0.0896 27 1 1.3527 -7.3149 -1.2630 28 1 0.4920 -9.5606 0.3612 29 1 -1.3999 -9.9405 1.8819 30 1 -2.4008 -8.0405 3.0948 31 1 -1.4976 -5.7774 2.7821 32 1 1.1311 -4.7336 2.1330 33 1 -0.3168 -4.2946 1.2008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845217828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:20 Heat of formation + Delta-G solvation = -94.094287 kcal Electronic energy + Delta-G solvation = -17227.213502 eV Core-core repulsion = 14409.327553 eV Total energy + Delta-G solvation = -2817.885949 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.52702 -40.46662 -37.67093 -36.49996 -34.33541 -33.53138 -31.38316 -29.92660 -27.63277 -25.34896 -24.17368 -23.02563 -21.93689 -20.23662 -19.89398 -18.53707 -17.36028 -16.97748 -16.73366 -16.23230 -15.90418 -15.63803 -15.20539 -14.90431 -14.56884 -14.14705 -13.80937 -13.71911 -13.58822 -13.09918 -12.98545 -12.50251 -12.37095 -12.32671 -12.21444 -12.09019 -11.89497 -11.72674 -11.36741 -10.92678 -10.71373 -9.61721 -9.43156 -8.55716 -6.35893 0.48614 0.51567 1.27267 1.32854 1.51444 1.60938 2.10093 2.71042 2.87946 2.95130 3.57543 3.73547 3.92116 4.04024 4.06812 4.21111 4.29269 4.38433 4.53096 4.63080 4.67508 4.72064 4.90347 4.90754 4.99910 5.07978 5.16576 5.17840 5.24227 5.34620 5.63807 5.66457 5.79530 5.81585 6.17764 6.63590 6.89445 7.75361 8.65162 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.039503 B = 0.005263 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.641492 B = 5318.596599 C = 5879.256874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.003 4.003 3 Si 1.017 2.983 4 H -0.265 1.265 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.423 4.423 8 H 0.080 0.920 9 O -0.242 6.242 10 C 0.399 3.601 11 O -0.581 6.581 12 C -0.062 4.062 13 H 0.107 0.893 14 C -0.094 4.094 15 C -0.071 4.071 16 C -0.089 4.089 17 C -0.122 4.122 18 C -0.124 4.124 19 C -0.127 4.127 20 C -0.134 4.134 21 C -0.088 4.088 22 C -0.063 4.063 23 H 0.279 0.721 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.143 0.857 31 H 0.121 0.879 32 H 0.065 0.935 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 -16.399 2.341 16.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.203 4.203 3 Si 0.836 3.164 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.184 1.184 7 C -0.499 4.499 8 H 0.098 0.902 9 O -0.150 6.150 10 C 0.247 3.753 11 O -0.479 6.479 12 C -0.081 4.081 13 H 0.125 0.875 14 C -0.131 4.131 15 C -0.108 4.108 16 C -0.089 4.089 17 C -0.139 4.139 18 C -0.141 4.141 19 C -0.144 4.144 20 C -0.152 4.152 21 C -0.088 4.088 22 C -0.100 4.100 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.122 0.878 27 H 0.109 0.891 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.161 0.839 31 H 0.139 0.861 32 H 0.083 0.917 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.770 -16.231 2.344 16.632 hybrid contribution 0.364 1.225 0.070 1.280 sum -2.407 -15.006 2.414 15.388 Atomic orbital electron populations 1.70077 1.07637 1.29326 1.46886 1.26529 0.96872 1.02304 0.94616 0.84583 0.77767 0.74764 0.79322 1.18927 1.18301 1.18360 1.21468 0.92130 0.81347 1.54978 0.90232 1.83913 1.40321 1.14188 1.76552 1.24387 0.86639 0.88174 0.76106 1.90500 1.17110 1.88620 1.51666 1.20902 0.98274 0.87584 1.01337 0.87487 1.21373 0.96191 0.92740 1.02842 1.20514 0.94911 0.96636 0.98710 1.19852 0.97688 0.93184 0.98160 1.21432 0.97224 0.96088 0.99190 1.21441 0.96283 0.99952 0.96467 1.21349 1.00561 0.92164 1.00356 1.21335 0.96585 0.98536 0.98705 1.19549 0.97090 0.93663 0.98535 1.20256 0.98887 0.94832 0.96042 0.91172 0.92120 0.91014 0.87752 0.89067 0.83486 0.83231 0.83911 0.86089 0.91658 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.06 13.67 21.62 0.30 -53.76 16 2 C 0.00 -0.17 5.49 84.87 0.47 0.29 16 3 Si 1.02 44.16 29.55 68.60 2.03 46.18 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.42 -26.36 9.64 67.94 0.66 -25.70 16 8 H 0.08 5.04 6.86 -2.91 -0.02 5.02 16 9 O -0.24 -14.63 9.69 14.84 0.14 -14.49 16 10 C 0.40 20.81 7.18 71.23 0.51 21.32 16 11 O -0.58 -32.82 15.09 20.79 0.31 -32.51 16 12 C -0.06 -2.39 2.65 -11.52 -0.03 -2.42 16 13 H 0.11 3.89 8.10 -2.38 -0.02 3.87 16 14 C -0.09 -2.98 4.71 30.62 0.14 -2.84 16 15 C -0.07 -1.64 5.67 29.74 0.17 -1.47 16 16 C -0.09 -2.24 5.74 -19.86 -0.11 -2.35 16 17 C -0.12 -2.41 9.61 22.36 0.21 -2.19 16 18 C -0.12 -2.27 10.05 22.21 0.22 -2.04 16 19 C -0.13 -2.63 10.05 22.20 0.22 -2.41 16 20 C -0.13 -3.52 9.61 22.36 0.21 -3.31 16 21 C -0.09 -2.62 5.74 -19.86 -0.11 -2.73 16 22 C -0.06 -2.27 4.93 29.74 0.15 -2.12 16 23 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 24 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 25 H 0.07 2.36 7.82 -2.39 -0.02 2.34 16 26 H 0.10 1.86 8.12 -2.39 -0.02 1.84 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.15 2.04 8.05 -2.91 -0.02 2.01 16 29 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.12 3.07 8.05 -2.91 -0.02 3.05 16 32 H 0.06 2.47 8.11 -2.39 -0.02 2.45 16 33 H 0.07 2.79 8.12 -2.39 -0.02 2.77 16 Total: -1.00 -73.85 284.30 6.59 -67.26 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 1.10 Total: 15.28 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 2.71 Total: -27.97 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.30 Total: -53.76 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: 0.46 Total: -46.99 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -73.85 6.59 -67.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845217828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.833 kcal (2) G-P(sol) polarization free energy of solvation -73.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds