Wall clock time and date at job start Sun Mar 29 2020 22:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99888 * 2 1 4 4 H 1.48495 * 109.47345 * 269.99955 * 3 2 1 5 5 H 1.48496 * 109.47244 * 30.00449 * 3 2 1 6 6 H 1.48508 * 109.46871 * 150.00195 * 3 2 1 7 7 C 1.37875 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99737 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46741 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46741 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99976 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99678 * 179.97438 * 11 10 9 14 14 C 1.46724 * 126.54936 * 180.02562 * 13 11 10 15 15 C 1.50472 * 107.65240 * 179.97438 * 14 13 11 16 16 C 1.38564 * 132.35263 * 180.02562 * 15 14 13 17 17 C 1.38257 * 118.99627 * 179.97438 * 16 15 14 18 18 N 1.31889 * 120.73127 * 0.28551 * 17 16 15 19 19 C 1.31882 * 121.81395 * 359.42360 * 18 17 16 20 20 C 1.38280 * 120.64273 * 0.57284 * 19 18 17 21 21 C 1.46701 * 126.55506 * 359.97438 * 13 11 10 22 22 H 0.97001 * 119.99906 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47248 * 60.00041 * 9 7 2 24 24 H 1.08999 * 109.47266 * 300.00210 * 9 7 2 25 25 H 1.08998 * 109.47357 * 59.99935 * 10 9 7 26 26 H 1.09001 * 109.46883 * 299.99377 * 10 9 7 27 27 H 1.09001 * 109.82081 * 60.43157 * 14 13 11 28 28 H 1.08999 * 109.82521 * 299.49348 * 14 13 11 29 29 H 1.08005 * 120.50138 * 0.02944 * 16 15 14 30 30 H 1.08002 * 119.63071 * 179.97438 * 17 16 15 31 31 H 1.07995 * 119.67615 * 180.27622 * 19 18 17 32 32 H 1.08999 * 109.81482 * 60.48789 * 21 13 11 33 33 H 1.09001 * 109.80676 * 299.58690 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 0.0001 12 8 0.2789 -4.9671 0.0010 13 7 2.1655 -6.1344 -0.0003 14 6 1.5817 -7.4804 -0.0003 15 6 2.7155 -8.4697 -0.0015 16 6 2.7457 -9.8550 -0.0024 17 6 3.9693 -10.4986 -0.0040 18 7 5.0936 -9.8091 0.0011 19 6 5.1004 -8.4903 -0.0035 20 6 3.9143 -7.7794 -0.0020 21 6 3.6230 -6.3018 -0.0019 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.8719 -3.6043 0.8894 26 1 2.8718 -3.6043 -0.8906 27 1 0.9700 -7.6180 -0.8920 28 1 0.9717 -7.6188 0.8924 29 1 1.8273 -10.4233 -0.0029 30 1 4.0049 -11.5781 -0.0043 31 1 6.0414 -7.9604 -0.0036 32 1 4.0487 -5.8419 0.8899 33 1 4.0467 -5.8412 -0.8943 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848382196.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:44 Heat of formation + Delta-G solvation = 2.868020 kcal Electronic energy + Delta-G solvation = -16727.518713 eV Core-core repulsion = 13946.130117 eV Total energy + Delta-G solvation = -2781.388596 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.19551 -39.14670 -36.71574 -33.53233 -32.56242 -31.68365 -30.92894 -28.42875 -26.55614 -25.06707 -22.49431 -22.36346 -21.32854 -19.03629 -17.32461 -16.65998 -16.34290 -16.30106 -15.77688 -15.36956 -14.67739 -14.44247 -14.41063 -13.56265 -13.50178 -13.13630 -13.07068 -12.34236 -12.20127 -12.18944 -11.71497 -11.18572 -10.95267 -10.62335 -10.01524 -9.97213 -9.90984 -9.72025 -9.37654 -9.31361 -9.10820 -8.46081 -8.34463 -5.98777 -4.03519 0.77327 0.90063 2.96493 3.06931 3.32020 3.38322 3.40766 3.45107 3.90694 4.05098 4.29512 4.44898 4.65431 4.83377 4.99993 5.23409 5.29183 5.36339 5.41326 5.41565 5.48610 5.52557 5.63494 5.92414 6.12228 6.15347 6.30904 6.36716 6.80323 7.64013 7.65297 7.70773 7.80764 8.03046 8.33213 8.57221 9.04416 9.60286 11.12186 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.050453 B = 0.004101 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.839473 B = 6826.330263 C = 7350.067096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.123 4.123 11 C 0.535 3.465 12 O -0.524 6.524 13 N -0.629 5.629 14 C 0.145 3.855 15 C -0.058 4.058 16 C -0.150 4.150 17 C 0.099 3.901 18 N -0.482 5.482 19 C 0.125 3.875 20 C -0.156 4.156 21 C 0.152 3.848 22 H 0.261 0.739 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.088 0.912 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.001 -19.041 -0.016 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.163 4.163 11 C 0.326 3.674 12 O -0.398 6.398 13 N -0.367 5.367 14 C 0.022 3.978 15 C -0.067 4.067 16 C -0.170 4.170 17 C -0.058 4.058 18 N -0.190 5.190 19 C -0.033 4.033 20 C -0.159 4.159 21 C 0.028 3.972 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.156 0.844 30 H 0.178 0.822 31 H 0.178 0.822 32 H 0.106 0.894 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.888 -19.240 -0.003 21.193 hybrid contribution -0.340 1.205 -0.011 1.252 sum 8.548 -18.035 -0.015 19.958 Atomic orbital electron populations 1.69997 1.06077 1.26655 1.50064 1.25025 0.94833 0.99269 0.95236 0.86576 0.79770 0.83429 0.78089 1.20649 1.21211 1.19846 1.21191 0.92946 0.90891 1.51580 0.92524 1.18937 0.93177 0.89319 0.98744 1.21895 1.00743 0.90950 1.02682 1.21365 0.88086 0.83683 0.74218 1.90700 1.14099 1.86513 1.48510 1.48355 1.06411 1.05230 1.76706 1.20128 0.93462 0.80883 1.03282 1.20714 0.95942 0.94247 0.95770 1.21520 1.00246 0.92833 1.02415 1.22753 0.87252 1.00458 0.95311 1.67784 1.30879 1.07939 1.12383 1.22147 0.96829 0.89365 0.94927 1.21420 0.95137 0.96829 1.02498 1.20181 0.82418 0.91274 1.03375 0.92903 0.95724 0.95720 0.89981 0.89981 0.89673 0.89680 0.84364 0.82188 0.82225 0.89392 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 10 C -0.12 -2.46 4.89 -27.88 -0.14 -2.59 16 11 C 0.53 10.38 7.87 -10.98 -0.09 10.29 16 12 O -0.52 -12.35 16.35 5.56 0.09 -12.26 16 13 N -0.63 -9.40 3.34 -176.28 -0.59 -9.99 16 14 C 0.15 1.85 6.90 -5.18 -0.04 1.82 16 15 C -0.06 -0.63 6.29 -104.58 -0.66 -1.29 16 16 C -0.15 -1.31 10.12 -39.45 -0.40 -1.71 16 17 C 0.10 0.86 11.19 -17.52 -0.20 0.66 16 18 N -0.48 -5.06 10.36 -13.21 -0.14 -5.20 16 19 C 0.12 1.21 11.19 -17.51 -0.20 1.01 16 20 C -0.16 -1.66 6.27 -104.62 -0.66 -2.31 16 21 C 0.15 1.72 6.53 -5.13 -0.03 1.68 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 24 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 30 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 289.55 15.07 4.36 4.36 Total: -1.00 -34.35 289.55 -7.67 -42.02 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -4.19 Total: -3.76 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.93 Total: -5.12 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.01 Total: -41.67 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.35 -7.67 -42.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848382196.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.889 kcal (2) G-P(sol) polarization free energy of solvation -34.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds