Wall clock time and date at job start Sun Mar 29 2020 22:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86798 * 120.00220 * 2 1 4 4 H 1.48503 * 109.47103 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47531 * 119.99595 * 3 2 1 7 7 C 1.37877 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47185 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.47381 * 179.97438 * 10 9 7 12 12 C 1.34224 * 117.00070 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00368 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00053 * 180.02562 * 12 11 10 15 15 F 1.39908 * 109.61635 * 59.77581 * 14 12 11 16 16 C 1.53175 * 109.54351 * 299.55830 * 14 12 11 17 17 C 1.53094 * 109.16661 * 183.15290 * 16 14 12 18 18 O 1.42898 * 109.41211 * 57.60371 * 17 16 14 19 19 C 1.42897 * 114.10001 * 298.84343 * 18 17 16 20 20 C 1.53089 * 109.41656 * 61.16248 * 19 18 17 21 21 H 0.97000 * 120.00193 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47019 * 60.00234 * 9 7 2 23 23 H 1.08997 * 109.47098 * 300.00004 * 9 7 2 24 24 H 1.08999 * 109.47003 * 59.99717 * 10 9 7 25 25 H 1.09007 * 109.46925 * 300.00011 * 10 9 7 26 26 H 1.09004 * 109.52259 * 303.05556 * 16 14 12 27 27 H 1.09006 * 109.52330 * 63.24389 * 16 14 12 28 28 H 1.09006 * 109.47665 * 297.62062 * 17 16 14 29 29 H 1.09002 * 109.48937 * 177.59283 * 17 16 14 30 30 H 1.09002 * 109.48425 * 301.17758 * 19 18 17 31 31 H 1.09001 * 109.49443 * 181.15303 * 19 18 17 32 32 H 1.08997 * 109.52675 * 182.48845 * 20 19 18 33 33 H 1.08995 * 109.52428 * 62.29514 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5191 -4.9196 0.0011 12 6 2.2502 -6.0453 0.0007 13 8 3.4568 -5.9821 -0.0007 14 6 1.5660 -7.3881 0.0007 15 9 0.7613 -7.5052 -1.1378 16 6 0.6994 -7.5216 1.2566 17 6 0.0711 -8.9173 1.2877 18 8 1.1041 -9.9040 1.2540 19 6 1.9170 -9.8579 0.0797 20 6 2.6196 -8.5000 0.0001 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 2.8718 -3.6043 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 1.3182 -7.3809 2.1429 27 1 -0.0880 -6.7680 1.2377 28 1 -0.5795 -9.0423 0.4221 29 1 -0.5126 -9.0331 2.2010 30 1 1.2907 -9.9953 -0.8017 31 1 2.6633 -10.6512 0.1225 32 1 3.2054 -8.4461 -0.9174 33 1 3.2772 -8.3791 0.8609 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869726262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:56 Heat of formation + Delta-G solvation = -195.240077 kcal Electronic energy + Delta-G solvation = -18159.617490 eV Core-core repulsion = 14906.576306 eV Total energy + Delta-G solvation = -3253.041184 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.12726 -40.24668 -38.94541 -36.40636 -33.53834 -33.29935 -31.54726 -30.35607 -26.71464 -24.88029 -24.03727 -21.98669 -20.91836 -20.11640 -18.02380 -17.14604 -16.65715 -16.33726 -16.13908 -15.80082 -15.46001 -15.30326 -14.62005 -14.59602 -13.80971 -13.23441 -12.82932 -12.81816 -12.73726 -12.40040 -12.38772 -11.71581 -11.33086 -11.14496 -11.01722 -10.89108 -10.80222 -10.71509 -10.35203 -9.93290 -9.75656 -9.62480 -9.35637 -8.48107 -6.13954 -4.19022 2.16805 2.72785 3.27743 3.31973 3.34867 3.57039 3.99114 4.04484 4.33832 4.44820 4.55376 4.69994 4.89862 5.06469 5.22569 5.24738 5.31259 5.37100 5.39438 5.68237 5.72057 5.85778 5.95173 5.98719 6.53792 6.75008 6.85012 7.47537 7.55893 7.77745 7.95552 8.18222 8.85989 9.45627 10.97449 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.053743 B = 0.004366 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.870203 B = 6412.054060 C = 6641.833023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.073 3.927 11 O -0.344 6.344 12 C 0.443 3.557 13 O -0.497 6.497 14 C 0.137 3.863 15 F -0.183 7.183 16 C -0.177 4.177 17 C 0.062 3.938 18 O -0.380 6.380 19 C 0.062 3.938 20 C -0.164 4.164 21 H 0.265 0.735 22 H 0.029 0.971 23 H 0.029 0.971 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.008 -18.235 1.436 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.000 4.000 11 O -0.260 6.260 12 C 0.283 3.717 13 O -0.385 6.385 14 C 0.117 3.883 15 F -0.163 7.163 16 C -0.215 4.215 17 C -0.014 4.014 18 O -0.299 6.299 19 C -0.015 4.015 20 C -0.202 4.202 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.208 -18.165 1.550 18.271 hybrid contribution 0.531 1.382 -0.375 1.527 sum 1.739 -16.783 1.175 16.914 Atomic orbital electron populations 1.69956 1.06110 1.27187 1.49479 1.24975 0.94923 0.99397 0.94754 0.86516 0.79484 0.82403 0.78802 1.20044 1.21068 1.20040 1.20921 0.93136 0.90048 1.52621 0.92284 1.19179 0.94146 0.88871 0.99005 1.23780 0.96574 0.78448 1.01164 1.86563 1.42192 1.15659 1.81551 1.23656 0.86761 0.87514 0.73771 1.90652 1.15246 1.87978 1.44645 1.20781 0.91011 0.91264 0.85246 1.92935 1.74710 1.96647 1.52011 1.22849 1.01462 1.00832 0.96364 1.22612 0.89632 0.85707 1.03475 1.87946 1.45690 1.54579 1.41680 1.22619 0.94279 0.96080 0.88535 1.22681 0.97534 0.93597 1.06379 0.92585 0.95236 0.95262 0.92022 0.92048 0.88487 0.87638 0.91990 0.87545 0.92175 0.87669 0.88629 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.28 55.43 0.74 -25.48 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.66 5.35 -27.88 -0.15 0.51 16 10 C 0.07 1.61 5.40 37.16 0.20 1.81 16 11 O -0.34 -6.95 10.16 -39.24 -0.40 -7.35 16 12 C 0.44 7.82 6.98 36.01 0.25 8.07 16 13 O -0.50 -9.60 15.72 -18.75 -0.29 -9.89 16 14 C 0.14 1.87 1.18 -91.59 -0.11 1.76 16 15 F -0.18 -2.66 16.06 2.25 0.04 -2.62 16 16 C -0.18 -2.02 5.14 -26.59 -0.14 -2.16 16 17 C 0.06 0.60 6.72 37.21 0.25 0.85 16 18 O -0.38 -4.06 10.76 -35.23 -0.38 -4.44 16 19 C 0.06 0.57 6.72 37.20 0.25 0.82 16 20 C -0.16 -1.83 4.52 -26.59 -0.12 -1.95 16 21 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 25 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 26 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 0.57 7.93 -51.93 -0.41 0.16 16 29 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.53 7.93 -51.93 -0.41 0.12 16 31 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.13 8.02 -51.93 -0.42 0.72 16 LS Contribution 286.62 15.07 4.32 4.32 Total: -1.00 -31.08 286.62 -5.56 -36.64 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -4.59 Total: -3.67 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 0.03 Total: -3.77 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.74 Total: -25.48 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -1.07 Total: -21.67 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.08 -5.56 -36.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869726262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.600 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds