Wall clock time and date at job start Sun Mar 29 2020 23:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 115.55820 * 2 1 4 4 C 1.53005 * 117.49665 * 145.68634 * 2 1 3 5 5 C 1.52999 * 117.49801 * 214.31022 * 2 1 3 6 6 H 1.08997 * 117.49987 * 0.02562 * 5 2 1 7 7 C 1.50705 * 117.49719 * 145.02163 * 5 2 1 8 8 O 1.21267 * 119.99850 * 0.02562 * 7 5 2 9 9 N 1.34776 * 119.99897 * 179.97438 * 7 5 2 10 10 C 1.39265 * 119.99962 * 185.14825 * 9 7 5 11 11 C 1.39669 * 119.57443 * 174.66811 * 10 9 7 12 12 C 1.38655 * 119.49626 * 180.02562 * 11 10 9 13 13 C 1.38350 * 118.66508 * 359.73889 * 12 11 10 14 14 C 1.40569 * 119.13403 * 0.52297 * 13 12 11 15 15 C 1.41341 * 119.79271 * 179.75096 * 14 13 12 16 16 H 1.08000 * 119.99453 * 359.72058 * 15 14 13 17 17 C 1.40023 * 120.00185 * 179.72556 * 15 14 13 18 18 N 1.30744 * 120.00150 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99967 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47442 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47089 * 299.99832 * 19 17 15 22 22 H 1.48503 * 109.46949 * 59.99549 * 19 17 15 23 23 N 1.31904 * 119.57130 * 354.68462 * 10 9 7 24 24 H 1.09003 * 109.47495 * 205.68706 * 1 2 3 25 25 H 1.09005 * 109.47294 * 325.68805 * 1 2 3 26 26 H 1.08998 * 109.47307 * 85.68871 * 1 2 3 27 27 H 1.08995 * 117.49862 * 0.02562 * 4 2 1 28 28 H 1.08997 * 117.49520 * 214.98083 * 4 2 1 29 29 H 0.97001 * 119.99866 * 5.15422 * 9 7 5 30 30 H 1.08000 * 120.25367 * 0.02562 * 11 10 9 31 31 H 1.07993 * 120.66785 * 179.97438 * 12 11 10 32 32 H 1.08002 * 120.43026 * 180.24986 * 13 12 11 33 33 H 0.96999 * 119.99972 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2364 -1.1210 -0.7650 6 1 1.6112 -1.8582 -1.2686 7 6 3.5293 -0.7811 -1.4608 8 8 3.9720 0.3463 -1.4008 9 7 4.1940 -1.7304 -2.1489 10 6 5.4403 -1.4458 -2.7014 11 6 6.1711 -2.4653 -3.3156 12 6 7.4120 -2.1803 -3.8646 13 6 7.8884 -0.8835 -3.7908 14 6 7.1077 0.0971 -3.1546 15 6 7.5832 1.4253 -3.0667 16 1 8.5456 1.6829 -3.4835 17 6 6.8066 2.4069 -2.4390 18 7 5.6413 2.0950 -1.9347 19 14 7.4354 4.1620 -2.3221 20 1 6.4331 5.0011 -1.6176 21 1 8.7147 4.1803 -1.5682 22 1 7.6582 4.6999 -3.6883 23 7 5.9155 -0.2170 -2.6375 24 1 -0.3634 -0.9261 0.4454 25 1 -0.3634 0.8489 0.5793 26 1 -0.3634 0.0773 -1.0247 27 1 1.6112 -1.8587 1.2680 28 1 3.1715 -0.8751 1.2684 29 1 3.8043 -2.6117 -2.2594 30 1 5.7727 -3.4681 -3.3625 31 1 7.9933 -2.9542 -4.3436 32 1 8.8495 -0.6290 -4.2126 33 1 5.1032 2.7751 -1.5002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473623.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:00 Heat of formation + Delta-G solvation = 41.368628 kcal Electronic energy + Delta-G solvation = -17503.841813 eV Core-core repulsion = 14724.122728 eV Total energy + Delta-G solvation = -2779.719085 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.47499 -37.92421 -36.13168 -34.01217 -32.95029 -30.29385 -29.30389 -28.39052 -25.60829 -23.96059 -21.69390 -21.08246 -20.33205 -19.06033 -17.70815 -16.48627 -16.08942 -14.72176 -14.45343 -14.36208 -14.18272 -13.71326 -13.38808 -13.13615 -12.83006 -12.49535 -12.02763 -11.91411 -11.73892 -11.23656 -11.11422 -10.95119 -10.64497 -10.44821 -10.10658 -9.93660 -9.83461 -9.59602 -8.98651 -8.89660 -7.94231 -7.18177 -6.93011 -6.11337 -4.37949 2.78460 3.07974 3.17777 3.19626 3.28707 3.52708 3.82571 4.08003 4.25211 4.93315 4.94089 5.00828 5.14543 5.44130 5.53709 5.75981 5.79956 5.84685 6.05879 6.08256 6.14447 6.21077 6.51240 6.51851 6.72938 6.86686 6.88101 7.26261 7.58499 7.66318 7.83527 8.10419 8.23350 8.50893 8.77369 9.07295 9.34248 10.27479 10.50697 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.008726 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.138128 B = 3207.943158 C = 4607.892819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.126 4.126 3 H 0.118 0.882 4 C -0.154 4.154 5 C -0.184 4.184 6 H 0.112 0.888 7 C 0.497 3.503 8 O -0.409 6.409 9 N -0.664 5.664 10 C 0.372 3.628 11 C -0.358 4.358 12 C -0.036 4.036 13 C -0.306 4.306 14 C 0.271 3.729 15 C -0.426 4.426 16 H 0.082 0.918 17 C 0.058 3.942 18 N -0.656 5.656 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.267 1.267 22 H -0.267 1.267 23 N -0.474 5.474 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.399 0.601 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 -4.734 3.681 10.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.145 4.145 3 H 0.136 0.864 4 C -0.191 4.191 5 C -0.206 4.206 6 H 0.130 0.870 7 C 0.279 3.721 8 O -0.273 6.273 9 N -0.310 5.310 10 C 0.133 3.867 11 C -0.383 4.383 12 C -0.061 4.061 13 C -0.329 4.329 14 C 0.146 3.854 15 C -0.457 4.457 16 H 0.100 0.900 17 C -0.171 4.171 18 N -0.275 5.275 19 Si 0.721 3.279 20 H -0.204 1.204 21 H -0.192 1.192 22 H -0.192 1.192 23 N -0.193 5.193 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.232 0.768 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.648 -3.070 4.307 10.137 hybrid contribution 0.573 -0.633 -0.518 0.998 sum -8.075 -3.703 3.789 9.658 Atomic orbital electron populations 1.21371 0.92827 1.01659 1.01877 1.22334 0.94610 0.95520 1.02042 0.86393 1.23037 1.02943 1.01389 0.91751 1.22393 0.98670 1.04267 0.95227 0.86982 1.19830 0.85018 0.86385 0.80847 1.91131 1.64030 1.17770 1.54335 1.43356 1.18413 1.15124 1.54135 1.18644 0.84971 0.91633 0.91419 1.20502 1.00403 0.97730 1.19703 1.20559 0.94116 0.95527 0.95857 1.21618 1.02770 0.94454 1.14084 1.18392 0.86694 0.92945 0.87396 1.19545 1.03353 0.91793 1.30963 0.90007 1.26181 0.95099 1.00351 0.95513 1.70319 1.06040 1.33161 1.17935 0.86582 0.79457 0.82673 0.79237 1.20405 1.19182 1.19178 1.68716 1.14032 1.13609 1.22961 0.92747 0.92036 0.92169 0.88531 0.88423 0.76803 0.89105 0.88643 0.88587 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.19 37.16 0.38 -0.91 16 2 C -0.13 -1.78 5.92 -90.62 -0.54 -2.32 16 3 H 0.12 1.96 7.67 -51.93 -0.40 1.56 16 4 C -0.15 -2.04 9.88 -26.72 -0.26 -2.31 16 5 C -0.18 -2.77 5.91 -91.77 -0.54 -3.31 16 6 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 7 C 0.50 10.35 7.57 -10.98 -0.08 10.26 16 8 O -0.41 -10.47 12.03 5.57 0.07 -10.40 16 9 N -0.66 -13.57 5.38 -11.40 -0.06 -13.63 16 10 C 0.37 9.33 7.43 -154.98 -1.15 8.18 16 11 C -0.36 -8.24 9.95 -38.89 -0.39 -8.62 16 12 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 13 C -0.31 -7.87 9.83 -38.66 -0.38 -8.25 16 14 C 0.27 7.77 6.55 -85.00 -0.56 7.21 16 15 C -0.43 -11.92 9.14 -37.73 -0.34 -12.26 16 16 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 17 C 0.06 1.54 5.50 -17.35 -0.10 1.45 16 18 N -0.66 -18.45 8.99 55.55 0.50 -17.95 16 19 Si 0.90 19.52 29.56 -169.99 -5.02 14.49 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 N -0.47 -13.62 5.74 -10.26 -0.06 -13.68 16 24 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 28 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.40 6.33 8.70 -40.82 -0.36 5.97 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 32 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.27 7.19 8.29 -40.82 -0.34 6.86 16 LS Contribution 286.24 15.07 4.31 4.31 Total: -1.00 -32.62 286.24 -8.71 -41.34 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.09 Total: 7.65 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -4.36 Total: -12.12 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.38 Total: -45.27 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.62 -8.71 -41.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473623.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.707 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds