Wall clock time and date at job start Sun Mar 29 2020 22:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00037 * 2 1 4 4 C 1.52998 * 109.47033 * 124.99731 * 3 2 1 5 5 C 1.50703 * 109.47342 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99724 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00534 * 180.02562 * 5 4 3 8 8 C 1.39264 * 120.00208 * 185.58426 * 7 5 4 9 9 C 1.39673 * 119.57594 * 18.83622 * 8 7 5 10 10 C 1.38654 * 119.49618 * 180.02562 * 9 8 7 11 11 C 1.38348 * 118.66851 * 359.74505 * 10 9 8 12 12 C 1.40575 * 119.12941 * 0.50327 * 11 10 9 13 13 C 1.41335 * 119.78661 * 179.77024 * 12 11 10 14 14 H 1.07996 * 120.00171 * 8.65228 * 13 12 11 15 15 C 1.40029 * 119.99804 * 188.65884 * 13 12 11 16 16 N 1.30750 * 119.99823 * 195.97110 * 15 13 12 17 17 Si 1.86802 * 120.00245 * 15.97011 * 15 13 12 18 18 H 1.48496 * 109.46995 * 269.99982 * 17 15 13 19 19 H 1.48499 * 109.46718 * 30.00237 * 17 15 13 20 20 H 1.48503 * 109.46925 * 149.99783 * 17 15 13 21 21 N 1.31904 * 119.57483 * 198.86285 * 8 7 5 22 22 H 1.07997 * 119.99995 * 180.02562 * 1 2 3 23 23 H 1.07999 * 119.99716 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.99716 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47112 * 5.00023 * 3 2 1 26 26 H 1.09002 * 109.46827 * 244.99813 * 3 2 1 27 27 H 1.09004 * 109.47362 * 60.00363 * 4 3 2 28 28 H 1.09002 * 109.47381 * 299.99742 * 4 3 2 29 29 H 0.97001 * 119.99563 * 5.57851 * 7 5 4 30 30 H 1.08004 * 120.24932 * 0.02562 * 9 8 7 31 31 H 1.08002 * 120.66660 * 180.02562 * 10 9 8 32 32 H 1.07999 * 120.43389 * 180.24362 * 11 10 9 33 33 H 0.96995 * 120.00178 * 354.92764 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7890 2.6379 1.1814 6 8 3.5705 3.4643 0.3210 7 7 4.7061 2.8865 2.1371 8 6 5.3186 4.1354 2.2064 9 6 4.7265 5.2298 1.5720 10 6 5.3380 6.4722 1.6416 11 6 6.5219 6.5906 2.3475 12 6 7.0705 5.4504 2.9599 13 6 8.2820 5.5545 3.6803 14 1 8.7106 6.5258 3.8785 15 6 8.9267 4.3983 4.1368 16 7 9.8557 4.4862 5.0526 17 14 8.4594 2.7304 3.4375 18 1 7.3652 2.1417 4.2508 19 1 8.0010 2.8928 2.0344 20 1 9.6405 1.8309 3.4715 21 7 6.4507 4.2693 2.8700 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5399 0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1316 0.0896 26 1 2.6213 1.4025 -0.9314 27 1 3.7400 0.5065 1.0921 28 1 2.4772 1.2356 2.1131 29 1 4.9395 2.1957 2.7767 30 1 3.7994 5.1091 1.0313 31 1 4.8965 7.3313 1.1584 32 1 7.0204 7.5457 2.4234 33 1 10.1503 5.3568 5.3627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:51 Heat of formation + Delta-G solvation = -0.300990 kcal Electronic energy + Delta-G solvation = -16975.850869 eV Core-core repulsion = 14194.324854 eV Total energy + Delta-G solvation = -2781.526015 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.15846 -38.20156 -35.58013 -34.51986 -33.50906 -31.08418 -31.07186 -29.27162 -25.49921 -24.69585 -21.92107 -21.62251 -19.94978 -19.77024 -18.34600 -17.26831 -16.49529 -15.91498 -15.10023 -14.98810 -14.50481 -14.08717 -13.92573 -13.58848 -12.96280 -12.83228 -12.45057 -12.29509 -12.14734 -11.86140 -11.23964 -11.19981 -11.10492 -10.86193 -10.32963 -9.98841 -9.74653 -9.57469 -9.16841 -9.08782 -8.51883 -7.91953 -7.41275 -7.28155 -4.76419 2.07080 2.22058 2.66912 3.06366 3.32730 3.46723 3.60148 3.89256 4.32363 4.58893 4.64002 4.76946 4.98712 5.14342 5.18657 5.46321 5.54446 5.66366 5.82332 5.87602 6.02829 6.11113 6.43271 6.47812 6.53367 6.57601 6.58523 7.14846 7.20877 7.43432 7.58136 7.62287 7.78676 8.11724 8.29817 8.46362 8.65776 9.43939 9.96876 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031436 B = 0.005834 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.481835 B = 4798.264355 C = 5579.144407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.080 4.080 4 C -0.134 4.134 5 C 0.513 3.487 6 O -0.516 6.516 7 N -0.656 5.656 8 C 0.382 3.618 9 C -0.311 4.311 10 C -0.037 4.037 11 C -0.278 4.278 12 C 0.274 3.726 13 C -0.482 4.482 14 H 0.084 0.916 15 C 0.049 3.951 16 N -0.804 5.804 17 Si 1.143 2.857 18 H -0.288 1.288 19 H -0.281 1.281 20 H -0.326 1.326 21 N -0.595 5.595 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.407 0.593 30 H 0.138 0.862 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.307 -8.139 -5.507 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.170 4.170 3 C -0.118 4.118 4 C -0.174 4.174 5 C 0.300 3.700 6 O -0.391 6.391 7 N -0.301 5.301 8 C 0.151 3.849 9 C -0.336 4.336 10 C -0.061 4.061 11 C -0.301 4.301 12 C 0.150 3.850 13 C -0.514 4.514 14 H 0.102 0.898 15 C -0.173 4.173 16 N -0.426 5.426 17 Si 0.976 3.024 18 H -0.215 1.215 19 H -0.208 1.208 20 H -0.259 1.259 21 N -0.320 5.320 22 H 0.114 0.886 23 H 0.115 0.885 24 H 0.127 0.873 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.243 0.757 30 H 0.156 0.844 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.771 -9.756 -5.505 16.249 hybrid contribution -0.367 2.228 0.021 2.258 sum -12.138 -7.529 -5.484 15.300 Atomic orbital electron populations 1.23872 0.95995 1.01829 1.01544 1.22990 0.96077 0.98411 0.99547 1.20517 0.97800 0.95393 0.98053 1.21631 0.99006 0.95357 1.01420 1.20709 0.79511 0.89249 0.80568 1.90626 1.65016 1.47263 1.36182 1.43359 1.40076 1.14161 1.32531 1.18129 0.89409 0.83816 0.93584 1.21523 1.05955 0.92126 1.13985 1.20921 0.94177 0.95953 0.95070 1.21613 1.00429 0.99354 1.08658 1.18183 0.92287 0.85588 0.88923 1.20663 1.04323 0.96434 1.29977 0.89826 1.27656 0.91787 1.06934 0.90887 1.70615 1.23898 1.30142 1.17932 0.82138 0.72370 0.70397 0.77462 1.21486 1.20779 1.25873 1.66190 1.09994 1.27260 1.28585 0.88596 0.88514 0.87290 0.90575 0.90018 0.88510 0.88476 0.75743 0.84450 0.87678 0.87727 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 14.32 29.01 0.42 -1.18 16 2 C -0.15 -1.32 9.52 -36.03 -0.34 -1.66 16 3 C -0.08 -0.84 4.95 -27.88 -0.14 -0.98 16 4 C -0.13 -1.43 5.68 -27.88 -0.16 -1.59 16 5 C 0.51 8.29 7.67 -10.99 -0.08 8.21 16 6 O -0.52 -10.00 12.78 5.56 0.07 -9.93 16 7 N -0.66 -12.03 5.41 -11.40 -0.06 -12.09 16 8 C 0.38 8.84 7.51 -154.98 -1.16 7.67 16 9 C -0.31 -7.11 8.83 -38.89 -0.34 -7.46 16 10 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 11 C -0.28 -6.74 9.83 -38.66 -0.38 -7.12 16 12 C 0.27 7.28 6.27 -85.00 -0.53 6.75 16 13 C -0.48 -13.19 9.51 -37.73 -0.36 -13.55 16 14 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 15 C 0.05 1.33 5.51 -17.34 -0.10 1.24 16 16 N -0.80 -21.80 13.65 55.55 0.76 -21.04 16 17 Si 1.14 27.54 25.93 -169.99 -4.41 23.13 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.95 6.55 56.52 0.37 -6.58 16 20 H -0.33 -7.70 7.11 56.52 0.40 -7.30 16 21 N -0.60 -15.20 5.07 -10.26 -0.05 -15.25 16 22 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 23 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 24 H 0.11 0.81 8.06 -52.49 -0.42 0.38 16 25 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 26 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.41 6.43 8.83 -40.82 -0.36 6.07 16 30 H 0.14 3.06 5.33 -52.50 -0.28 2.78 16 31 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 33 H 0.28 7.38 8.73 -40.82 -0.36 7.02 16 LS Contribution 286.51 15.07 4.32 4.32 Total: -1.00 -30.81 286.51 -6.97 -37.78 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.02 Total: 3.98 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -3.58 Total: -10.90 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.64 Total: -48.38 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 27.54 SS G_CDS: -4.41 Total: 23.13 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.81 -6.97 -37.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.484 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds