Wall clock time and date at job start Sun Mar 29 2020 22:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00037 * 2 1 4 4 C 1.52998 * 109.47033 * 124.99731 * 3 2 1 5 5 C 1.50703 * 109.47342 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99724 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00534 * 180.02562 * 5 4 3 8 8 C 1.39264 * 120.00208 * 185.58426 * 7 5 4 9 9 C 1.39673 * 119.57594 * 18.83622 * 8 7 5 10 10 C 1.38654 * 119.49618 * 180.02562 * 9 8 7 11 11 C 1.38348 * 118.66851 * 359.74505 * 10 9 8 12 12 C 1.40575 * 119.12941 * 0.50327 * 11 10 9 13 13 C 1.41335 * 119.78661 * 179.77024 * 12 11 10 14 14 H 1.07996 * 120.00171 * 8.65228 * 13 12 11 15 15 C 1.40029 * 119.99804 * 188.65884 * 13 12 11 16 16 N 1.30750 * 119.99823 * 195.97110 * 15 13 12 17 17 Si 1.86802 * 120.00245 * 15.97011 * 15 13 12 18 18 H 1.48496 * 109.46995 * 269.99982 * 17 15 13 19 19 H 1.48499 * 109.46718 * 30.00237 * 17 15 13 20 20 H 1.48503 * 109.46925 * 149.99783 * 17 15 13 21 21 N 1.31904 * 119.57483 * 198.86285 * 8 7 5 22 22 H 1.07997 * 119.99995 * 180.02562 * 1 2 3 23 23 H 1.07999 * 119.99716 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.99716 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47112 * 5.00023 * 3 2 1 26 26 H 1.09002 * 109.46827 * 244.99813 * 3 2 1 27 27 H 1.09004 * 109.47362 * 60.00363 * 4 3 2 28 28 H 1.09002 * 109.47381 * 299.99742 * 4 3 2 29 29 H 0.97001 * 119.99563 * 5.57851 * 7 5 4 30 30 H 1.08004 * 120.24932 * 0.02562 * 9 8 7 31 31 H 1.08002 * 120.66660 * 180.02562 * 10 9 8 32 32 H 1.07999 * 120.43389 * 180.24362 * 11 10 9 33 33 H 0.96995 * 120.00178 * 354.92764 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7890 2.6379 1.1814 6 8 3.5705 3.4643 0.3210 7 7 4.7061 2.8865 2.1371 8 6 5.3186 4.1354 2.2064 9 6 4.7265 5.2298 1.5720 10 6 5.3380 6.4722 1.6416 11 6 6.5219 6.5906 2.3475 12 6 7.0705 5.4504 2.9599 13 6 8.2820 5.5545 3.6803 14 1 8.7106 6.5258 3.8785 15 6 8.9267 4.3983 4.1368 16 7 9.8557 4.4862 5.0526 17 14 8.4594 2.7304 3.4375 18 1 7.3652 2.1417 4.2508 19 1 8.0010 2.8928 2.0344 20 1 9.6405 1.8309 3.4715 21 7 6.4507 4.2693 2.8700 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5399 0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1316 0.0896 26 1 2.6213 1.4025 -0.9314 27 1 3.7400 0.5065 1.0921 28 1 2.4772 1.2356 2.1131 29 1 4.9395 2.1957 2.7767 30 1 3.7994 5.1091 1.0313 31 1 4.8965 7.3313 1.1584 32 1 7.0204 7.5457 2.4234 33 1 10.1503 5.3568 5.3627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:51 Heat of formation + Delta-G solvation = -18.789186 kcal Electronic energy + Delta-G solvation = -16976.652577 eV Core-core repulsion = 14194.324854 eV Total energy + Delta-G solvation = -2782.327723 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.66417 -39.90993 -36.53340 -36.05292 -35.35945 -32.95765 -32.18103 -30.83532 -27.34346 -25.86220 -23.65573 -23.22677 -21.32683 -20.62121 -20.25640 -18.80345 -17.94712 -17.05290 -16.86261 -16.36938 -15.97887 -15.49706 -15.44897 -15.00695 -14.54578 -14.29283 -14.20168 -13.74620 -13.49900 -13.07056 -12.92643 -12.71043 -12.17561 -11.98985 -11.85570 -11.84080 -11.56992 -11.04353 -10.72589 -10.39563 -10.17736 -9.85213 -9.32661 -9.20691 -6.80653 0.51284 0.76070 1.42022 1.51481 1.55987 1.74735 1.91889 2.04267 2.40747 2.63196 3.53996 3.61143 3.99108 4.08922 4.19993 4.33482 4.45678 4.49767 4.65325 4.69254 4.70879 4.82417 4.95940 5.12187 5.25004 5.36034 5.39687 5.44804 5.72499 5.80162 5.82768 5.94927 5.95949 6.31672 6.43494 6.65598 7.09815 7.53208 7.92582 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031436 B = 0.005834 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.481835 B = 4798.264355 C = 5579.144407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C -0.078 4.078 4 C -0.121 4.121 5 C 0.512 3.488 6 O -0.549 6.549 7 N -0.655 5.655 8 C 0.372 3.628 9 C -0.311 4.311 10 C -0.031 4.031 11 C -0.296 4.296 12 C 0.258 3.742 13 C -0.514 4.514 14 H 0.068 0.932 15 C 0.021 3.979 16 N -0.825 5.825 17 Si 1.175 2.825 18 H -0.270 1.270 19 H -0.293 1.293 20 H -0.320 1.320 21 N -0.608 5.608 22 H 0.112 0.888 23 H 0.093 0.907 24 H 0.127 0.873 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.420 0.580 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.113 0.887 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.405 -9.999 -6.232 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.175 4.175 3 C -0.116 4.116 4 C -0.161 4.161 5 C 0.302 3.698 6 O -0.426 6.426 7 N -0.301 5.301 8 C 0.140 3.860 9 C -0.335 4.335 10 C -0.055 4.055 11 C -0.319 4.319 12 C 0.133 3.867 13 C -0.546 4.546 14 H 0.086 0.914 15 C -0.196 4.196 16 N -0.448 5.448 17 Si 1.005 2.995 18 H -0.196 1.196 19 H -0.221 1.221 20 H -0.252 1.252 21 N -0.333 5.333 22 H 0.130 0.870 23 H 0.111 0.889 24 H 0.145 0.855 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.258 0.742 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.131 0.869 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.892 -11.640 -6.215 19.160 hybrid contribution 0.082 2.858 0.105 2.861 sum -13.810 -8.782 -6.110 17.469 Atomic orbital electron populations 1.24049 0.96039 1.02500 1.00496 1.22967 0.96173 0.97968 1.00407 1.20471 0.97515 0.96208 0.97406 1.21710 0.99067 0.92551 1.02723 1.21784 0.78405 0.90622 0.78997 1.90596 1.65730 1.48957 1.37350 1.43503 1.40191 1.12872 1.33525 1.18533 0.88836 0.85979 0.92669 1.21883 1.06123 0.92381 1.13149 1.21324 0.93182 0.97133 0.93865 1.21774 1.01495 0.99238 1.09356 1.18375 0.92288 0.86919 0.89122 1.20666 1.05669 0.96084 1.32217 0.91384 1.28471 0.91553 1.08873 0.90713 1.70639 1.25032 1.30022 1.19066 0.81732 0.72844 0.68501 0.76439 1.19574 1.22089 1.25200 1.66198 1.10886 1.26970 1.29228 0.86991 0.88900 0.85548 0.91907 0.91317 0.85628 0.85857 0.74225 0.83489 0.84074 0.86871 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 14.32 67.78 0.97 -1.63 16 2 C -0.16 -2.22 9.52 25.65 0.24 -1.97 16 3 C -0.08 -1.45 4.95 29.85 0.15 -1.30 16 4 C -0.12 -2.15 5.68 29.85 0.17 -1.98 16 5 C 0.51 15.24 7.67 87.66 0.67 15.92 16 6 O -0.55 -20.32 12.78 -3.03 -0.04 -20.36 16 7 N -0.65 -22.43 5.41 -308.37 -1.67 -24.09 16 8 C 0.37 16.63 7.51 133.25 1.00 17.63 16 9 C -0.31 -13.66 8.83 22.72 0.20 -13.46 16 10 C -0.03 -1.32 10.15 22.40 0.23 -1.09 16 11 C -0.30 -14.25 9.83 22.87 0.22 -14.02 16 12 C 0.26 13.77 6.27 40.19 0.25 14.02 16 13 C -0.51 -28.87 9.51 23.47 0.22 -28.65 16 14 H 0.07 3.89 8.06 -2.91 -0.02 3.86 16 15 C 0.02 1.18 5.51 85.29 0.47 1.65 16 16 N -0.82 -45.56 13.65 21.84 0.30 -45.27 16 17 Si 1.18 55.40 25.93 68.60 1.78 57.18 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.29 -14.26 6.55 99.48 0.65 -13.61 16 20 H -0.32 -14.58 7.11 99.48 0.71 -13.87 16 21 N -0.61 -30.55 5.07 -186.36 -0.95 -31.50 16 22 H 0.11 1.15 8.06 -2.91 -0.02 1.12 16 23 H 0.09 1.30 7.84 -2.91 -0.02 1.27 16 24 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 25 H 0.06 1.31 7.75 -2.39 -0.02 1.30 16 26 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 27 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.42 12.06 8.83 -92.71 -0.82 11.24 16 30 H 0.15 6.23 5.33 -3.17 -0.02 6.22 16 31 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 32 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 33 H 0.28 15.12 8.73 -92.71 -0.81 14.31 16 Total: -1.00 -66.57 286.51 4.43 -62.14 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.20 Total: 16.78 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 4.80 Total: -14.88 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -2.32 Total: -100.86 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.04 Total: -20.36 kcal Atomic # 14 Polarization: 55.40 SS G_CDS: 1.78 Total: 57.18 kcal Total: -66.57 4.43 -62.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.351 kcal (2) G-P(sol) polarization free energy of solvation -66.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds