Wall clock time and date at job start Sun Mar 29 2020 22:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86802 * 119.99906 * 2 1 4 4 H 1.48497 * 109.46939 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46974 * 119.99682 * 3 2 1 6 6 H 1.48504 * 109.47091 * 239.99731 * 3 2 1 7 7 C 1.40031 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99515 * 4.81877 * 7 2 1 9 9 C 1.41340 * 120.00379 * 184.82737 * 7 2 1 10 10 C 1.40601 * 119.78772 * 185.12780 * 9 7 2 11 11 C 1.38309 * 119.12978 * 180.02562 * 10 9 7 12 12 C 1.38705 * 118.66636 * 359.97438 * 11 10 9 13 13 C 1.39624 * 119.49435 * 0.02562 * 12 11 10 14 14 N 1.39270 * 119.57411 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99837 * 339.10099 * 14 13 12 16 16 O 1.21271 * 119.99803 * 3.71670 * 15 14 13 17 17 C 1.50699 * 119.99983 * 183.71636 * 15 14 13 18 18 C 1.53783 * 113.61209 * 279.13634 * 17 15 14 19 19 C 1.53959 * 87.01751 * 220.04691 * 18 17 15 20 20 C 1.53779 * 87.10920 * 25.36884 * 19 18 17 21 21 N 1.31927 * 120.85435 * 359.71659 * 13 12 11 22 22 H 0.97008 * 119.99998 * 174.98862 * 1 2 3 23 23 H 1.07996 * 120.44124 * 359.97285 * 10 9 7 24 24 H 1.07999 * 120.67047 * 180.02562 * 11 10 9 25 25 H 1.07994 * 120.24917 * 180.02562 * 12 11 10 26 26 H 0.97001 * 120.00653 * 159.10350 * 14 13 12 27 27 H 1.08995 * 112.84834 * 50.33375 * 17 15 14 28 28 H 1.08992 * 113.61794 * 334.57086 * 18 17 15 29 29 H 1.08998 * 113.61079 * 105.47408 * 18 17 15 30 30 H 1.08995 * 113.54106 * 270.81172 * 19 18 17 31 31 H 1.09002 * 113.65948 * 139.93744 * 19 18 17 32 32 H 1.09001 * 113.61011 * 220.08676 * 20 19 18 33 33 H 1.08995 * 113.69479 * 89.19740 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2763 2.7464 -0.0006 5 1 3.0950 1.6964 1.2125 6 1 3.0951 1.6964 -1.2125 7 6 2.0076 -1.2127 0.0005 8 1 1.4704 -2.1464 -0.0776 9 6 3.4172 -1.2148 0.1035 10 6 4.1237 -2.4256 -0.0048 11 6 5.5028 -2.4120 0.0986 12 6 6.1426 -1.1989 0.3059 13 6 5.3850 -0.0302 0.4049 14 7 6.0256 1.1886 0.6136 15 6 7.2703 1.2160 1.1300 16 8 7.8584 0.1785 1.3501 17 6 7.9310 2.5359 1.4340 18 6 8.5517 3.2126 0.2004 19 6 9.7293 3.6083 1.1098 20 6 9.3609 2.3969 1.9826 21 7 4.0705 -0.0650 0.2983 22 1 -0.4850 -0.8369 -0.0734 23 1 3.5964 -3.3542 -0.1658 24 1 6.0703 -3.3274 0.0187 25 1 7.2185 -1.1586 0.3900 26 1 5.5761 2.0179 0.3873 27 1 7.2993 3.1994 2.0245 28 1 8.8258 2.5134 -0.5896 29 1 7.9771 4.0631 -0.1664 30 1 9.5896 4.5661 1.6108 31 1 10.7030 3.5194 0.6281 32 1 9.4388 2.5900 3.0525 33 1 9.8562 1.4737 1.6820 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882477175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:04 Heat of formation + Delta-G solvation = 7.692957 kcal Electronic energy + Delta-G solvation = -17390.278590 eV Core-core repulsion = 14609.099219 eV Total energy + Delta-G solvation = -2781.179371 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.50610 -38.71360 -37.23492 -34.55267 -33.49352 -31.11116 -29.75044 -26.88945 -25.75041 -25.24650 -22.43987 -21.75764 -20.24372 -19.37883 -18.38447 -17.53936 -16.61015 -15.68640 -15.20493 -14.91869 -14.75894 -14.13959 -13.65624 -13.12900 -12.93941 -12.68872 -12.58235 -12.31377 -12.08529 -11.88609 -11.35311 -11.00336 -10.84127 -10.67347 -10.54975 -10.33236 -9.98449 -9.66906 -9.20613 -9.03994 -8.55337 -7.75461 -7.48123 -7.22609 -4.78813 2.21854 2.63837 3.01900 3.33679 3.52076 3.63049 3.96019 4.36463 4.38544 4.46326 4.62572 4.63284 4.67458 5.11055 5.42144 5.50796 5.53536 5.64656 5.71587 5.82431 5.86731 5.95379 6.09770 6.28107 6.46347 6.51605 6.58210 7.13781 7.19770 7.42825 7.56669 7.63785 7.77036 8.11335 8.29084 8.47397 8.64755 9.40149 9.98910 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029435 B = 0.007014 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.027689 B = 3990.804526 C = 4803.423845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.043 3.957 3 Si 1.154 2.846 4 H -0.332 1.332 5 H -0.280 1.280 6 H -0.295 1.295 7 C -0.477 4.477 8 H 0.083 0.917 9 C 0.273 3.727 10 C -0.277 4.277 11 C -0.036 4.036 12 C -0.315 4.315 13 C 0.384 3.616 14 N -0.653 5.653 15 C 0.524 3.476 16 O -0.515 6.515 17 C -0.138 4.138 18 C -0.126 4.126 19 C -0.141 4.141 20 C -0.116 4.116 21 N -0.599 5.599 22 H 0.283 0.717 23 H 0.105 0.895 24 H 0.106 0.894 25 H 0.145 0.855 26 H 0.407 0.593 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.682 7.485 1.023 15.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.178 4.178 3 Si 0.990 3.010 4 H -0.266 1.266 5 H -0.208 1.208 6 H -0.223 1.223 7 C -0.509 4.509 8 H 0.101 0.899 9 C 0.149 3.851 10 C -0.299 4.299 11 C -0.060 4.060 12 C -0.339 4.339 13 C 0.153 3.847 14 N -0.297 5.297 15 C 0.311 3.689 16 O -0.390 6.390 17 C -0.160 4.160 18 C -0.164 4.164 19 C -0.178 4.178 20 C -0.154 4.154 21 N -0.325 5.325 22 H 0.094 0.906 23 H 0.123 0.877 24 H 0.124 0.876 25 H 0.162 0.838 26 H 0.242 0.758 27 H 0.134 0.866 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.345 9.015 1.325 16.159 hybrid contribution 0.018 -2.345 -0.207 2.355 sum 13.363 6.670 1.119 14.976 Atomic orbital electron populations 1.70644 1.08169 1.32807 1.31180 1.27774 0.95323 1.06179 0.88502 0.81857 0.70735 0.69638 0.78814 1.26610 1.20774 1.22289 1.20730 0.90364 0.96359 1.43453 0.89870 1.18277 0.93448 0.85951 0.87454 1.21610 0.94022 0.98361 1.15916 1.20966 0.94164 0.96549 0.94367 1.21752 1.01387 0.91492 1.19302 1.18173 0.88608 0.84500 0.93384 1.43341 1.16046 1.08506 1.61800 1.20540 0.80595 0.91420 0.76390 1.90565 1.63344 1.33843 1.51245 1.22842 0.97691 0.94764 1.00683 1.22891 0.97338 1.00354 0.95781 1.22853 0.98511 0.98426 0.98042 1.22798 0.93369 0.99343 0.99872 1.65990 1.06817 1.29740 1.29952 0.90579 0.87697 0.87610 0.83770 0.75843 0.86628 0.89483 0.90452 0.89903 0.90997 0.90987 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.07 13.65 55.55 0.76 -21.31 16 2 C 0.04 1.18 5.52 -17.35 -0.10 1.09 16 3 Si 1.15 27.93 25.61 -169.99 -4.35 23.57 16 4 H -0.33 -7.93 7.11 56.52 0.40 -7.53 16 5 H -0.28 -6.67 6.61 56.52 0.37 -6.30 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.48 -13.15 9.57 -37.73 -0.36 -13.51 16 8 H 0.08 2.28 8.05 -52.48 -0.42 1.86 16 9 C 0.27 7.28 6.40 -85.00 -0.54 6.74 16 10 C -0.28 -6.72 9.83 -38.66 -0.38 -7.10 16 11 C -0.04 -0.81 10.15 -39.38 -0.40 -1.21 16 12 C -0.31 -7.24 8.90 -38.89 -0.35 -7.58 16 13 C 0.38 8.97 7.51 -154.97 -1.16 7.81 16 14 N -0.65 -12.31 5.41 -11.40 -0.06 -12.37 16 15 C 0.52 8.78 7.25 -10.98 -0.08 8.70 16 16 O -0.51 -10.16 12.57 5.57 0.07 -10.09 16 17 C -0.14 -1.61 4.14 -90.96 -0.38 -1.99 16 18 C -0.13 -1.20 7.64 -25.82 -0.20 -1.40 16 19 C -0.14 -1.15 8.09 -25.83 -0.21 -1.36 16 20 C -0.12 -1.21 7.40 -25.92 -0.19 -1.40 16 21 N -0.60 -15.41 4.54 -10.26 -0.05 -15.46 16 22 H 0.28 7.41 8.72 -40.82 -0.36 7.05 16 23 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 24 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 25 H 0.15 3.24 5.17 -52.92 -0.27 2.96 16 26 H 0.41 6.72 8.82 -40.82 -0.36 6.36 16 27 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.15 7.45 -51.93 -0.39 0.76 16 LS Contribution 278.13 15.07 4.19 4.19 Total: -1.00 -30.88 278.13 -7.79 -38.67 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.00 Total: 4.00 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -4.34 Total: -11.22 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.65 Total: -49.14 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 27.93 SS G_CDS: -4.35 Total: 23.57 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.88 -7.79 -38.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882477175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.367 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds