Wall clock time and date at job start Sun Mar 29 2020 23:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 115.55066 * 2 1 4 4 C 1.53005 * 117.51984 * 214.29987 * 2 1 3 5 5 C 1.53001 * 59.99957 * 252.51843 * 4 2 1 6 6 H 1.09000 * 117.49739 * 252.51116 * 5 4 2 7 7 C 1.50697 * 117.51914 * 107.47762 * 5 4 2 8 8 O 1.21270 * 120.00203 * 291.28588 * 7 5 4 9 9 N 1.34782 * 119.99942 * 111.28733 * 7 5 4 10 10 C 1.39263 * 120.00232 * 174.40501 * 9 7 5 11 11 C 1.39671 * 119.57147 * 341.10716 * 10 9 7 12 12 C 1.38658 * 119.49595 * 179.97438 * 11 10 9 13 13 C 1.38355 * 118.66556 * 0.02562 * 12 11 10 14 14 C 1.40573 * 119.13145 * 359.97438 * 13 12 11 15 15 C 1.41340 * 119.78550 * 179.97438 * 14 13 12 16 16 H 1.07988 * 120.00158 * 6.45090 * 15 14 13 17 17 C 1.40034 * 119.99557 * 186.44854 * 15 14 13 18 18 N 1.30739 * 120.00233 * 353.72369 * 17 15 14 19 19 Si 1.86797 * 119.99630 * 173.72005 * 17 15 14 20 20 H 1.48495 * 109.47327 * 94.98597 * 19 17 15 21 21 H 1.48498 * 109.47200 * 214.98636 * 19 17 15 22 22 H 1.48504 * 109.47287 * 334.98636 * 19 17 15 23 23 N 1.31901 * 119.57753 * 160.83745 * 10 9 7 24 24 H 1.08995 * 109.47406 * 274.33211 * 1 2 3 25 25 H 1.08999 * 109.46780 * 34.33338 * 1 2 3 26 26 H 1.08998 * 109.47201 * 154.32849 * 1 2 3 27 27 H 1.09000 * 117.50029 * 145.02758 * 4 2 1 28 28 H 1.08998 * 117.49725 * 0.02562 * 4 2 1 29 29 H 0.97001 * 119.99666 * 354.39680 * 9 7 5 30 30 H 1.08000 * 120.25412 * 359.97438 * 11 10 9 31 31 H 1.08003 * 120.66872 * 180.02562 * 12 11 10 32 32 H 1.08001 * 120.43037 * 179.97438 * 13 12 11 33 33 H 0.96997 * 120.00077 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2369 -1.1210 -0.7647 5 6 2.2365 -1.1207 0.7654 6 1 3.1713 -0.8746 1.2689 7 6 1.3720 -2.1401 1.4615 8 8 0.1639 -2.0519 1.4032 9 7 1.9415 -3.1498 2.1490 10 6 1.1481 -4.0236 2.8882 11 6 -0.1483 -3.6444 3.2435 12 6 -0.9372 -4.5158 3.9790 13 6 -0.4106 -5.7430 4.3409 14 6 0.9012 -6.0662 3.9527 15 6 1.4531 -7.3158 4.3153 16 1 0.8356 -8.0594 4.7970 17 6 2.8005 -7.5896 4.0499 18 7 3.5161 -6.7414 3.3588 19 14 3.5753 -9.1668 4.6835 20 1 3.5222 -10.2051 3.6233 21 1 4.9902 -8.9093 5.0537 22 1 2.8296 -9.6399 5.8774 23 7 1.6286 -5.2008 3.2390 24 1 -0.3634 0.0776 1.0247 25 1 -0.3633 0.8486 -0.5796 26 1 -0.3633 -0.9262 -0.4452 27 1 3.1721 -0.8750 -1.2677 28 1 1.6120 -1.8585 -1.2683 29 1 2.9041 -3.2679 2.1288 30 1 -0.5334 -2.6797 2.9477 31 1 -1.9424 -4.2421 4.2637 32 1 -0.9999 -6.4435 4.9141 33 1 4.4495 -6.9309 3.1753 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882478097.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:02 Heat of formation + Delta-G solvation = 30.889348 kcal Electronic energy + Delta-G solvation = -17249.634797 eV Core-core repulsion = 14469.461297 eV Total energy + Delta-G solvation = -2780.173500 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.11336 -38.11993 -36.37360 -34.21227 -33.25436 -30.41399 -29.45589 -28.29003 -25.66889 -24.27185 -21.63296 -21.52193 -20.63398 -19.40907 -17.55264 -16.84119 -16.37692 -15.22362 -14.85722 -14.73910 -14.28125 -13.86256 -13.43769 -12.95635 -12.93195 -12.42447 -12.31965 -12.08183 -11.95927 -11.43866 -11.27422 -11.05488 -10.78161 -10.68139 -10.20868 -10.11666 -9.99932 -9.75899 -9.19692 -8.78715 -8.04056 -7.68879 -7.09525 -6.42816 -4.51002 2.44379 2.88186 3.08455 3.11805 3.20983 3.29261 3.53129 3.93306 3.94682 4.67494 4.76617 4.90128 4.92949 5.27457 5.39010 5.69909 5.83700 5.90709 5.95439 6.06898 6.17652 6.19823 6.44376 6.62488 6.77568 6.81802 6.86413 7.13766 7.49071 7.52006 7.86258 7.91434 8.13825 8.30460 8.67725 8.74315 8.97356 10.04469 10.30687 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.034073 B = 0.005783 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.573121 B = 4840.700451 C = 5564.885420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 H 0.109 0.891 4 C -0.152 4.152 5 C -0.189 4.189 6 H 0.123 0.877 7 C 0.540 3.460 8 O -0.517 6.517 9 N -0.643 5.643 10 C 0.357 3.643 11 C -0.313 4.313 12 C -0.050 4.050 13 C -0.289 4.289 14 C 0.278 3.722 15 C -0.436 4.436 16 H 0.085 0.915 17 C 0.072 3.928 18 N -0.723 5.723 19 Si 0.907 3.093 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.261 1.261 23 N -0.507 5.507 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.407 0.593 30 H 0.131 0.869 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.655 8.632 -4.889 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.138 4.138 3 H 0.127 0.873 4 C -0.190 4.190 5 C -0.211 4.211 6 H 0.141 0.859 7 C 0.327 3.673 8 O -0.393 6.393 9 N -0.287 5.287 10 C 0.122 3.878 11 C -0.338 4.338 12 C -0.075 4.075 13 C -0.312 4.312 14 C 0.152 3.848 15 C -0.468 4.468 16 H 0.103 0.897 17 C -0.153 4.153 18 N -0.345 5.345 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.185 1.185 23 N -0.226 5.226 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.243 0.757 30 H 0.149 0.851 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.857 8.515 -5.260 10.179 hybrid contribution 0.259 -0.640 0.586 0.905 sum 2.116 7.876 -4.674 9.399 Atomic orbital electron populations 1.21374 0.91504 1.01328 1.02715 1.22351 0.96622 0.93333 1.01458 0.87331 1.23082 1.02947 1.01874 0.91089 1.22275 1.02070 1.00958 0.95751 0.85932 1.19566 0.88153 0.81194 0.78398 1.90607 1.14322 1.74464 1.59859 1.43199 1.11057 1.27490 1.46931 1.18527 0.88466 0.89303 0.91471 1.21611 0.96180 1.03647 1.12313 1.20818 0.97391 0.93838 0.95437 1.21721 0.98810 0.98769 1.11872 1.18190 0.87414 0.91686 0.87520 1.19563 0.94952 0.98691 1.33592 0.89669 1.26039 0.97643 0.97803 0.93813 1.70119 1.07398 1.32530 1.24482 0.86324 0.78735 0.81738 0.80078 1.19555 1.20143 1.18477 1.68065 1.36492 1.00162 1.17866 0.91224 0.93577 0.91607 0.87982 0.88189 0.75736 0.85130 0.88343 0.88231 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 8.43 37.16 0.31 -1.16 16 2 C -0.12 -1.39 6.41 -90.62 -0.58 -1.97 16 3 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.15 -1.74 9.88 -26.73 -0.26 -2.01 16 5 C -0.19 -2.52 6.19 -91.77 -0.57 -3.09 16 6 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 7 C 0.54 9.92 7.43 -10.98 -0.08 9.84 16 8 O -0.52 -10.74 9.91 5.57 0.06 -10.69 16 9 N -0.64 -13.21 5.41 -11.40 -0.06 -13.27 16 10 C 0.36 8.98 7.51 -154.99 -1.16 7.82 16 11 C -0.31 -7.74 8.83 -38.89 -0.34 -8.08 16 12 C -0.05 -1.20 10.15 -39.38 -0.40 -1.60 16 13 C -0.29 -7.36 9.83 -38.66 -0.38 -7.74 16 14 C 0.28 7.76 6.54 -85.00 -0.56 7.21 16 15 C -0.44 -11.74 9.13 -37.73 -0.34 -12.08 16 16 H 0.09 2.15 7.85 -52.49 -0.41 1.73 16 17 C 0.07 1.81 5.49 -17.34 -0.10 1.72 16 18 N -0.72 -18.93 11.49 55.55 0.64 -18.30 16 19 Si 0.91 18.51 29.56 -169.99 -5.03 13.49 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 23 N -0.51 -14.03 7.92 -10.26 -0.08 -14.12 16 24 H 0.07 1.03 7.26 -51.93 -0.38 0.66 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.99 7.02 -51.93 -0.36 0.62 16 27 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.10 1.26 8.05 -51.93 -0.42 0.84 16 29 H 0.41 7.58 8.83 -40.82 -0.36 7.22 16 30 H 0.13 3.16 5.34 -52.50 -0.28 2.88 16 31 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 32 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 33 H 0.27 6.39 8.29 -40.82 -0.34 6.05 16 LS Contribution 282.75 15.07 4.26 4.26 Total: -1.00 -30.62 282.75 -8.56 -39.18 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -3.88 Total: 10.60 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -4.46 Total: -11.15 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.50 Total: -45.68 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.06 Total: -10.69 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.62 -8.56 -39.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882478097.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.066 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds