Wall clock time and date at job start Sun Mar 29 2020 22:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 120.00128 * 2 1 4 4 H 1.48500 * 109.47236 * 239.99811 * 3 2 1 5 5 H 1.48501 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47127 * 119.99706 * 3 2 1 7 7 C 1.40052 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00452 * 179.97438 * 7 2 1 9 9 C 1.46383 * 119.99543 * 0.02562 * 7 2 1 10 10 O 1.21687 * 119.99884 * 359.97438 * 9 7 2 11 11 N 1.34772 * 119.99901 * 180.02562 * 9 7 2 12 12 C 1.46491 * 120.00085 * 179.97438 * 11 9 7 13 13 H 1.09000 * 109.25547 * 35.52617 * 12 11 9 14 14 C 1.52730 * 109.25812 * 154.99672 * 12 11 9 15 15 C 1.53323 * 108.44030 * 171.54104 * 14 12 11 16 16 C 1.52776 * 108.38894 * 290.13860 * 15 14 12 17 17 C 1.50576 * 110.50769 * 50.85339 * 16 15 14 18 18 C 1.39187 * 117.95282 * 162.75679 * 17 16 15 19 19 C 1.38415 * 118.86232 * 179.44512 * 18 17 16 20 20 C 1.38237 * 118.84341 * 0.02562 * 19 18 17 21 21 N 1.31508 * 120.61156 * 0.12087 * 20 19 18 22 22 C 1.32702 * 122.40220 * 359.97267 * 21 20 19 23 23 H 0.97003 * 119.99789 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99755 * 359.97438 * 11 9 7 25 25 H 1.09004 * 109.63587 * 51.85713 * 14 12 11 26 26 H 1.09003 * 109.81423 * 291.32903 * 14 12 11 27 27 H 1.09002 * 109.68894 * 49.87521 * 15 14 12 28 28 H 1.09002 * 109.68519 * 170.40384 * 15 14 12 29 29 H 1.09001 * 109.25590 * 171.16582 * 16 15 14 30 30 H 1.09000 * 109.25366 * 290.60843 * 16 15 14 31 31 H 1.07996 * 120.57169 * 359.42443 * 18 17 16 32 32 H 1.08004 * 120.57501 * 180.02562 * 19 18 17 33 33 H 1.07996 * 119.69442 * 180.09861 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0016 12 6 1.2165 -4.9164 0.0022 13 1 0.3117 -4.8093 -0.5962 14 6 2.0966 -6.0064 -0.6062 15 6 1.4027 -7.3587 -0.4046 16 6 1.4447 -7.7050 1.0828 17 6 0.9367 -6.5521 1.9074 18 6 0.5609 -6.8067 3.2232 19 6 0.1021 -5.7583 4.0018 20 6 0.0326 -4.4948 3.4452 21 7 0.3937 -4.2922 2.1970 22 6 0.8368 -5.2702 1.4172 23 1 -0.4850 0.8401 -0.0004 24 1 2.9190 -3.6477 0.0020 25 1 3.0664 -6.0143 -0.1086 26 1 2.2328 -5.8196 -1.6714 27 1 0.3667 -7.2930 -0.7372 28 1 1.9236 -8.1273 -0.9755 29 1 0.8224 -8.5809 1.2657 30 1 2.4720 -7.9280 1.3710 31 1 0.6259 -7.8052 3.6296 32 1 -0.1964 -5.9245 5.0264 33 1 -0.3218 -3.6666 4.0408 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885389699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:07 Heat of formation + Delta-G solvation = -11.131147 kcal Electronic energy + Delta-G solvation = -17713.629270 eV Core-core repulsion = 14931.633624 eV Total energy + Delta-G solvation = -2781.995646 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.24649 -37.25051 -35.94264 -33.43857 -32.21263 -31.22955 -30.12086 -28.35128 -25.87898 -23.74138 -22.92794 -21.91436 -19.65223 -19.45193 -17.06088 -16.23913 -16.01063 -15.47438 -15.12386 -14.46353 -13.97536 -13.90707 -13.56379 -13.14669 -12.87921 -12.54263 -12.26191 -12.12008 -11.69232 -11.39724 -11.22028 -10.94357 -10.87132 -10.56944 -10.32163 -10.25772 -10.09753 -9.25338 -8.72384 -8.65157 -8.37234 -7.39869 -7.30077 -6.01456 -4.46258 1.53689 1.73012 3.23823 3.28085 3.30054 4.18816 4.29459 4.64493 4.74128 4.85361 4.94124 5.01772 5.16466 5.23084 5.36067 5.45379 5.51071 5.72963 5.78549 5.91342 5.95528 6.02565 6.10024 6.15484 6.23387 6.36845 6.54999 6.56211 6.67527 7.15467 7.57322 8.07030 8.24450 8.47924 8.74670 9.18645 9.74029 10.78867 11.03333 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.030489 B = 0.006861 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.145303 B = 4080.152120 C = 4660.331920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.090 3.910 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.567 3.433 10 O -0.561 6.561 11 N -0.754 5.754 12 C 0.204 3.796 13 H 0.091 0.909 14 C -0.123 4.123 15 C -0.118 4.118 16 C -0.071 4.071 17 C -0.140 4.140 18 C -0.090 4.090 19 C -0.187 4.187 20 C 0.098 3.902 21 N -0.430 5.430 22 C 0.132 3.868 23 H 0.265 0.735 24 H 0.377 0.623 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 -14.016 3.583 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.370 3.630 10 O -0.441 6.441 11 N -0.408 5.408 12 C 0.096 3.904 13 H 0.108 0.892 14 C -0.161 4.161 15 C -0.156 4.156 16 C -0.109 4.109 17 C -0.143 4.143 18 C -0.116 4.116 19 C -0.207 4.207 20 C -0.062 4.062 21 N -0.136 5.136 22 C -0.006 4.006 23 H 0.076 0.924 24 H 0.208 0.792 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.695 -13.017 3.213 13.676 hybrid contribution 0.932 -0.010 0.730 1.184 sum 3.627 -13.027 3.942 14.085 Atomic orbital electron populations 1.70022 1.06876 1.26880 1.36028 1.25635 0.94531 0.99910 0.92826 0.86530 0.79856 0.81587 0.79253 1.19455 1.20702 1.19501 1.20812 0.93271 0.89609 1.54706 0.91977 1.18011 0.87230 0.81971 0.75773 1.90583 1.13877 1.86283 1.53394 1.46173 1.08017 1.04122 1.82490 1.19236 0.96536 0.85603 0.89038 0.89176 1.21814 0.98896 0.93893 1.01499 1.21541 1.01544 0.97056 0.95421 1.20378 1.00896 0.95178 0.94424 1.20527 1.02519 0.95931 0.95311 1.21411 0.97657 0.99043 0.93471 1.22065 1.03144 0.94656 1.00854 1.22815 0.95698 0.95767 0.91927 1.67852 1.06702 1.34759 1.04329 1.21983 0.93391 0.87659 0.97532 0.92378 0.79151 0.91513 0.90585 0.91344 0.91221 0.91098 0.90870 0.85758 0.85609 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.76 11.83 55.55 0.66 -23.11 16 2 C 0.09 2.60 5.50 -17.37 -0.10 2.50 16 3 Si 0.90 20.87 29.56 -169.99 -5.02 15.85 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.55 -15.99 9.54 -35.63 -0.34 -16.33 16 8 H 0.06 1.68 7.85 -52.49 -0.41 1.26 16 9 C 0.57 16.52 7.03 -12.99 -0.09 16.43 16 10 O -0.56 -18.44 14.00 5.20 0.07 -18.36 16 11 N -0.75 -17.50 4.94 -56.47 -0.28 -17.78 16 12 C 0.20 4.07 2.62 -69.21 -0.18 3.89 16 13 H 0.09 2.05 7.58 -51.93 -0.39 1.66 16 14 C -0.12 -1.75 5.42 -26.70 -0.14 -1.90 16 15 C -0.12 -1.37 5.98 -26.68 -0.16 -1.53 16 16 C -0.07 -0.83 5.69 -28.06 -0.16 -0.99 16 17 C -0.14 -2.20 5.74 -104.56 -0.60 -2.80 16 18 C -0.09 -1.26 9.75 -39.16 -0.38 -1.64 16 19 C -0.19 -2.77 10.12 -39.52 -0.40 -3.17 16 20 C 0.10 1.84 11.19 -17.69 -0.20 1.64 16 21 N -0.43 -9.82 8.53 -9.51 -0.08 -9.90 16 22 C 0.13 2.64 6.36 -82.44 -0.52 2.12 16 23 H 0.27 7.50 8.29 -40.82 -0.34 7.16 16 24 H 0.38 7.80 8.57 -40.82 -0.35 7.45 16 25 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.15 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 280.36 15.07 4.22 4.22 Total: -1.00 -36.50 280.36 -7.80 -44.30 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.09 Total: 6.56 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -3.28 Total: -1.78 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.30 Total: -50.79 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.07 Total: -18.36 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -36.50 -7.80 -44.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885389699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.164 kcal (2) G-P(sol) polarization free energy of solvation -36.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds