Wall clock time and date at job start Sun Mar 29 2020 22:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50696 * 120.00492 * 2 1 4 4 C 1.33160 * 119.99682 * 180.02562 * 2 1 3 5 5 C 1.46898 * 119.99831 * 351.76125 * 4 2 1 6 6 O 1.21640 * 120.00408 * 354.04162 * 5 4 2 7 7 N 1.34777 * 119.99738 * 174.04295 * 5 4 2 8 8 C 1.36953 * 120.00187 * 4.36905 * 7 5 4 9 9 H 1.08006 * 120.00023 * 126.85916 * 8 7 5 10 10 C 1.38997 * 120.00593 * 306.86747 * 8 7 5 11 11 N 1.31363 * 120.00447 * 166.88249 * 10 8 7 12 12 Si 1.86802 * 119.99676 * 346.88400 * 10 8 7 13 13 H 1.48500 * 109.47223 * 95.48549 * 12 10 8 14 14 H 1.48499 * 109.47032 * 215.48978 * 12 10 8 15 15 H 1.48504 * 109.47046 * 335.49027 * 12 10 8 16 16 C 1.39334 * 120.00194 * 184.37769 * 7 5 4 17 17 C 1.39088 * 119.70173 * 184.99987 * 16 7 5 18 18 C 1.38371 * 119.09689 * 180.02562 * 17 16 7 19 19 C 1.38831 * 118.49565 * 359.97438 * 18 17 16 20 20 C 1.38155 * 119.31447 * 0.25449 * 19 18 17 21 21 N 1.31876 * 120.85373 * 359.47338 * 20 19 18 22 22 H 1.08998 * 109.46921 * 263.59870 * 1 2 3 23 23 H 1.08999 * 109.46651 * 23.59568 * 1 2 3 24 24 H 1.08999 * 109.47349 * 143.59133 * 1 2 3 25 25 H 1.08998 * 109.47225 * 270.00656 * 3 2 1 26 26 H 1.09002 * 109.47013 * 30.00017 * 3 2 1 27 27 H 1.08999 * 109.47426 * 149.99965 * 3 2 1 28 28 H 1.07994 * 119.99513 * 171.76181 * 4 2 1 29 29 H 0.96991 * 119.99987 * 179.97438 * 11 10 8 30 30 H 1.07996 * 120.45321 * 0.04334 * 17 16 7 31 31 H 1.08004 * 120.75505 * 180.02562 * 18 17 16 32 32 H 1.08007 * 120.34277 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.56907 * 179.72697 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1727 -1.1532 -0.0005 5 6 1.4495 -2.4189 0.1812 6 8 0.2610 -2.4085 0.4400 7 7 2.1029 -3.5915 0.0613 8 6 3.4573 -3.6032 -0.1411 9 1 4.0956 -4.1830 0.5093 10 6 4.0108 -2.8689 -1.1835 11 7 5.3080 -2.6673 -1.2286 12 14 2.9097 -2.1688 -2.5203 13 1 2.5689 -0.7608 -2.1939 14 1 3.6209 -2.2169 -3.8230 15 1 1.6638 -2.9723 -2.6066 16 6 1.4004 -4.7920 0.1430 17 6 2.0925 -5.9983 0.1230 18 6 1.3823 -7.1831 0.2044 19 6 -0.0010 -7.1205 0.3037 20 6 -0.6235 -5.8872 0.3131 21 7 0.0799 -4.7741 0.2394 22 1 -0.3633 -0.1146 1.0212 23 1 -0.3632 0.9418 -0.4114 24 1 -0.3634 -0.8271 -0.6099 25 1 2.4422 1.6197 -1.0276 26 1 1.6716 2.0647 0.5138 27 1 3.2130 1.1746 0.5138 28 1 3.2443 -1.1580 -0.1345 29 1 5.6942 -2.1552 -1.9562 30 1 3.1697 -6.0101 0.0455 31 1 1.8926 -8.1349 0.1917 32 1 -0.5849 -8.0269 0.3685 33 1 -1.6997 -5.8339 0.3857 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892463606.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:24 Heat of formation + Delta-G solvation = 26.384250 kcal Electronic energy + Delta-G solvation = -18023.263414 eV Core-core repulsion = 15242.894558 eV Total energy + Delta-G solvation = -2780.368856 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.82160 -40.07114 -37.21777 -36.26682 -34.24117 -33.17704 -31.31925 -28.85733 -28.62815 -27.06585 -24.74743 -23.80974 -21.92483 -20.10132 -19.00981 -18.47395 -17.60196 -16.96001 -16.46073 -16.06243 -15.99320 -15.48745 -15.24439 -14.81148 -14.68309 -14.40884 -14.03058 -13.79886 -13.37865 -13.28866 -13.14626 -12.98839 -12.64589 -12.49295 -12.22544 -12.07922 -11.38130 -10.91609 -10.75431 -10.62647 -9.81115 -9.77039 -8.94076 -8.62069 -6.50041 0.09292 0.53506 0.72558 1.18398 1.24467 1.32917 2.07831 2.32620 2.39453 2.71216 3.21901 3.66582 3.97131 4.00536 4.12199 4.34723 4.39588 4.44071 4.60292 4.61842 4.66697 4.79433 4.90187 5.00565 5.03934 5.17088 5.23008 5.41728 5.54972 5.60899 5.64801 5.72120 6.00947 6.29528 6.77655 6.95050 7.33220 7.75421 8.47108 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022646 B = 0.010518 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.125109 B = 2661.464720 C = 3487.220716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.049 4.049 3 C -0.118 4.118 4 C -0.249 4.249 5 C 0.508 3.492 6 O -0.533 6.533 7 N -0.421 5.421 8 C -0.359 4.359 9 H 0.086 0.914 10 C 0.068 3.932 11 N -0.880 5.880 12 Si 0.899 3.101 13 H -0.221 1.221 14 H -0.275 1.275 15 H -0.301 1.301 16 C 0.322 3.678 17 C -0.212 4.212 18 C -0.051 4.051 19 C -0.210 4.210 20 C 0.103 3.897 21 N -0.530 5.530 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.131 0.869 29 H 0.287 0.713 30 H 0.132 0.868 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 0.095 0.367 6.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.051 4.051 3 C -0.174 4.174 4 C -0.269 4.269 5 C 0.303 3.697 6 O -0.413 6.413 7 N -0.135 5.135 8 C -0.487 4.487 9 H 0.104 0.896 10 C -0.140 4.140 11 N -0.515 5.515 12 Si 0.724 3.276 13 H -0.144 1.144 14 H -0.201 1.201 15 H -0.227 1.227 16 C 0.094 3.906 17 C -0.236 4.236 18 C -0.077 4.077 19 C -0.231 4.231 20 C -0.056 4.056 21 N -0.247 5.247 22 H 0.092 0.908 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.149 0.851 29 H 0.098 0.902 30 H 0.150 0.850 31 H 0.187 0.813 32 H 0.190 0.810 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.093 1.124 0.427 7.194 hybrid contribution 0.581 -0.800 -0.703 1.213 sum -6.513 0.324 -0.276 6.527 Atomic orbital electron populations 1.20986 0.90809 1.02162 1.02780 1.22980 0.97147 0.95180 0.89778 1.21020 1.00103 0.92637 1.03613 1.22623 1.01675 0.91895 1.10733 1.19337 0.86801 0.85432 0.78144 1.90674 1.15511 1.87624 1.47482 1.41531 1.07778 1.02383 1.61778 1.18715 0.78917 1.35248 1.15789 0.89633 1.25795 0.96101 0.95029 0.97043 1.69669 1.11249 1.37529 1.33029 0.86625 0.78670 0.82260 0.80043 1.14398 1.20065 1.22732 1.19589 0.88634 0.87879 0.94500 1.21771 1.01925 0.91921 1.07959 1.21786 0.94537 0.97862 0.93523 1.22311 0.95296 0.99665 1.05812 1.23166 1.00843 0.87472 0.94098 1.67635 1.06309 1.33552 1.17170 0.90814 0.89517 0.92951 0.89684 0.88107 0.91103 0.85101 0.90190 0.85014 0.81323 0.81026 0.80819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.92 8.43 71.24 0.60 -3.32 16 2 C -0.05 -1.83 5.53 -17.59 -0.10 -1.93 16 3 C -0.12 -3.21 10.01 71.23 0.71 -2.49 16 4 C -0.25 -11.50 5.20 23.40 0.12 -11.38 16 5 C 0.51 26.80 5.99 86.51 0.52 27.32 16 6 O -0.53 -28.77 11.60 -4.16 -0.05 -28.82 16 7 N -0.42 -22.73 2.19 -468.38 -1.03 -23.76 16 8 C -0.36 -19.75 7.96 84.08 0.67 -19.08 16 9 H 0.09 4.95 7.54 -2.91 -0.02 4.92 16 10 C 0.07 3.62 3.87 84.95 0.33 3.95 16 11 N -0.88 -47.37 13.95 21.67 0.30 -47.07 16 12 Si 0.90 43.34 24.28 68.60 1.67 45.01 16 13 H -0.22 -9.62 5.54 99.48 0.55 -9.07 16 14 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.30 -16.33 7.11 99.48 0.71 -15.63 16 16 C 0.32 16.21 7.28 132.93 0.97 17.17 16 17 C -0.21 -9.07 9.33 22.51 0.21 -8.86 16 18 C -0.05 -1.63 10.17 22.44 0.23 -1.40 16 19 C -0.21 -6.09 10.11 22.39 0.23 -5.86 16 20 C 0.10 3.70 11.18 84.67 0.95 4.65 16 21 N -0.53 -25.47 7.91 -192.99 -1.53 -27.00 16 22 H 0.07 2.62 7.98 -2.39 -0.02 2.60 16 23 H 0.09 2.31 8.09 -2.39 -0.02 2.29 16 24 H 0.05 2.21 6.28 -2.39 -0.01 2.19 16 25 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.10 2.09 8.12 -2.39 -0.02 2.07 16 27 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 28 H 0.13 6.37 5.11 -2.91 -0.01 6.35 16 29 H 0.29 14.25 8.31 -92.71 -0.77 13.47 16 30 H 0.13 5.77 6.70 -2.91 -0.02 5.75 16 31 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 32 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 33 H 0.17 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -69.53 273.26 5.76 -63.77 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.96 Total: 19.11 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 5.43 Total: -1.24 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -2.25 Total: -97.82 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.05 Total: -28.82 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.67 Total: 45.01 kcal Total: -69.53 5.76 -63.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892463606.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.154 kcal (2) G-P(sol) polarization free energy of solvation -69.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds