Wall clock time and date at job start Sun Mar 29 2020 23:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 115.56432 * 2 1 4 4 C 1.53001 * 117.50007 * 214.31179 * 2 1 3 5 5 C 1.52997 * 117.50239 * 145.68850 * 2 1 3 6 6 H 1.08999 * 117.50332 * 214.98077 * 5 2 1 7 7 C 1.50705 * 117.49656 * 359.97438 * 5 2 1 8 8 O 1.21273 * 120.00109 * 0.02562 * 7 5 2 9 9 N 1.34775 * 120.00305 * 180.02562 * 7 5 2 10 10 C 1.37214 * 119.99728 * 355.09028 * 9 7 5 11 11 H 1.07997 * 120.00338 * 341.61255 * 10 9 7 12 12 C 1.38899 * 119.99813 * 161.60745 * 10 9 7 13 13 N 1.31407 * 119.99922 * 347.85109 * 12 10 9 14 14 Si 1.86798 * 119.99881 * 167.84661 * 12 10 9 15 15 H 1.48501 * 109.47060 * 59.99851 * 14 12 10 16 16 H 1.48501 * 109.47293 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47370 * 300.00566 * 14 12 10 18 18 C 1.39424 * 120.00412 * 175.09127 * 9 7 5 19 19 C 1.39064 * 119.69826 * 95.68140 * 18 9 7 20 20 C 1.38380 * 119.09932 * 179.73204 * 19 18 9 21 21 C 1.38831 * 118.49012 * 0.53573 * 20 19 18 22 22 C 1.38147 * 119.31389 * 359.72331 * 21 20 19 23 23 N 1.31883 * 120.84908 * 0.02562 * 22 21 20 24 24 H 1.09006 * 109.46992 * 154.30029 * 1 2 3 25 25 H 1.08999 * 109.47423 * 274.29849 * 1 2 3 26 26 H 1.09000 * 109.46889 * 34.30107 * 1 2 3 27 27 H 1.09001 * 117.49949 * 359.97438 * 4 2 1 28 28 H 1.09005 * 117.50110 * 145.02273 * 4 2 1 29 29 H 0.97002 * 119.99843 * 179.97438 * 13 12 10 30 30 H 1.07995 * 120.45204 * 359.97438 * 19 18 9 31 31 H 1.07997 * 120.76175 * 180.25944 * 20 19 18 32 32 H 1.08003 * 120.34509 * 179.70799 * 21 20 19 33 33 H 1.07994 * 119.57798 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 3.1715 -0.8751 1.2683 7 6 1.3721 -2.1402 1.4613 8 8 0.1639 -2.0530 1.4017 9 7 1.9415 -3.1489 2.1503 10 6 3.3045 -3.3066 2.1348 11 1 3.8939 -2.8352 1.3624 12 6 3.9262 -4.0724 3.1128 13 7 3.2557 -4.4464 4.1793 14 14 5.7152 -4.5708 2.9117 15 1 6.5606 -3.3536 2.8179 16 1 6.1385 -5.3791 4.0834 17 1 5.8685 -5.3765 1.6737 18 6 1.1459 -4.0321 2.8788 19 6 0.7572 -5.2396 2.3090 20 6 -0.0279 -6.1094 3.0452 21 6 -0.4080 -5.7350 4.3269 22 6 0.0102 -4.5174 4.8279 23 7 0.7624 -3.7109 4.1047 24 1 -0.3633 -0.9261 -0.4457 25 1 -0.3634 0.0770 1.0247 26 1 -0.3633 0.8490 -0.5791 27 1 1.6112 -1.8587 -1.2680 28 1 3.1716 -0.8752 -1.2683 29 1 3.6898 -4.9815 4.8621 30 1 1.0671 -5.4968 1.3069 31 1 -0.3417 -7.0560 2.6305 32 1 -1.0245 -6.3888 4.9260 33 1 -0.2833 -4.2218 5.8242 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892468579.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:10 Heat of formation + Delta-G solvation = 46.296169 kcal Electronic energy + Delta-G solvation = -18014.601568 eV Core-core repulsion = 15235.096157 eV Total energy + Delta-G solvation = -2779.505411 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.74419 -38.41919 -35.99753 -34.61684 -31.69865 -31.34283 -29.48520 -27.88028 -25.02924 -24.07383 -22.45618 -21.57220 -20.37145 -18.99131 -17.66449 -16.46745 -15.59250 -15.37288 -14.78613 -14.75252 -14.16059 -13.68373 -13.27243 -12.86324 -12.50785 -12.32370 -12.20027 -11.97696 -11.67791 -11.47843 -11.17103 -11.13717 -10.94350 -10.59453 -10.49123 -9.64645 -9.51180 -9.36377 -8.83755 -8.55261 -8.39514 -7.98220 -7.77758 -6.33514 -4.03423 2.20817 2.37703 3.08836 3.17424 3.18810 3.54690 4.00347 4.39285 4.51061 4.90899 5.06378 5.28258 5.47552 5.54564 5.63248 5.68467 5.84414 5.94102 6.06243 6.17159 6.20539 6.35939 6.44000 6.47793 6.62928 6.64494 6.68328 7.01974 7.04812 7.08029 7.33978 7.44467 7.85181 8.36076 8.99926 9.23506 9.37289 9.80122 10.63277 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.016894 B = 0.011427 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.958756 B = 2449.679507 C = 3707.951873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.134 4.134 3 H 0.101 0.899 4 C -0.159 4.159 5 C -0.153 4.153 6 H 0.121 0.879 7 C 0.506 3.494 8 O -0.587 6.587 9 N -0.407 5.407 10 C -0.342 4.342 11 H 0.107 0.893 12 C 0.038 3.962 13 N -0.852 5.852 14 Si 0.925 3.075 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.448 3.552 19 C -0.172 4.172 20 C -0.079 4.079 21 C -0.207 4.207 22 C 0.114 3.886 23 N -0.447 5.447 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.036 0.964 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.271 0.729 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 0.203 -3.811 4.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.153 4.153 3 H 0.119 0.881 4 C -0.197 4.197 5 C -0.174 4.174 6 H 0.139 0.861 7 C 0.296 3.704 8 O -0.471 6.471 9 N -0.125 5.125 10 C -0.469 4.469 11 H 0.124 0.876 12 C -0.169 4.169 13 N -0.487 5.487 14 Si 0.751 3.249 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.198 1.198 18 C 0.223 3.777 19 C -0.195 4.195 20 C -0.105 4.105 21 C -0.228 4.228 22 C -0.046 4.046 23 N -0.158 5.158 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.805 0.924 -3.288 3.863 hybrid contribution 1.099 -1.322 -0.074 1.720 sum -0.707 -0.398 -3.362 3.458 Atomic orbital electron populations 1.21268 0.92038 1.00403 1.02262 1.22298 0.96290 0.93310 1.03358 0.88123 1.22965 1.02200 1.01703 0.92847 1.22068 1.01645 0.99390 0.94259 0.86092 1.19288 0.87318 0.81201 0.82626 1.90558 1.14632 1.75674 1.66238 1.41133 1.06304 1.23411 1.41660 1.19585 0.80100 1.34452 1.12716 0.87576 1.25342 1.00138 0.97325 0.94067 1.69844 1.37199 1.34484 1.07175 0.86032 0.82043 0.78940 0.77898 1.19677 1.20913 1.19777 1.17599 0.86508 0.87018 0.86579 1.21801 1.01096 0.95543 1.01050 1.21132 0.96709 0.98344 0.94331 1.21770 1.04887 0.99021 0.97098 1.22213 0.93346 0.90526 0.98482 1.67184 1.08042 1.35240 1.05296 0.91937 0.91536 0.94528 0.88906 0.88837 0.91819 0.86384 0.86384 0.86491 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 8.43 37.16 0.31 -1.50 16 2 C -0.13 -2.28 6.41 -90.62 -0.58 -2.86 16 3 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 4 C -0.16 -2.65 9.88 -26.73 -0.26 -2.92 16 5 C -0.15 -3.08 4.88 -91.77 -0.45 -3.52 16 6 H 0.12 2.40 7.33 -51.93 -0.38 2.02 16 7 C 0.51 12.50 7.36 -10.98 -0.08 12.42 16 8 O -0.59 -15.43 13.08 5.56 0.07 -15.35 16 9 N -0.41 -10.65 2.74 -60.71 -0.17 -10.81 16 10 C -0.34 -8.76 8.97 -14.90 -0.13 -8.90 16 11 H 0.11 2.52 6.60 -52.49 -0.35 2.17 16 12 C 0.04 0.97 5.29 -17.49 -0.09 0.88 16 13 N -0.85 -23.00 10.39 55.49 0.58 -22.42 16 14 Si 0.92 19.69 29.57 -169.99 -5.03 14.66 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 18 C 0.45 11.67 3.24 -154.64 -0.50 11.17 16 19 C -0.17 -4.01 10.02 -39.22 -0.39 -4.40 16 20 C -0.08 -1.55 10.17 -39.31 -0.40 -1.95 16 21 C -0.21 -3.94 10.11 -39.40 -0.40 -4.34 16 22 C 0.11 2.46 11.18 -17.56 -0.20 2.27 16 23 N -0.45 -11.62 9.16 -12.34 -0.11 -11.73 16 24 H 0.06 1.20 7.02 -51.93 -0.36 0.83 16 25 H 0.07 1.32 7.26 -51.93 -0.38 0.94 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 1.59 8.05 -51.93 -0.42 1.17 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 31 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.14 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 283.39 15.07 4.27 4.27 Total: -1.00 -30.83 283.39 -7.54 -38.37 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -3.98 Total: 6.67 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -3.17 Total: -3.66 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.30 Total: -44.96 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.07 Total: -15.35 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.83 -7.54 -38.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892468579.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.664 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds