Wall clock time and date at job start Sun Mar 29 2020 22:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00062 * 2 1 4 4 H 1.48503 * 109.47165 * 275.95693 * 3 2 1 5 5 H 1.48497 * 109.47294 * 35.95644 * 3 2 1 6 6 H 1.48502 * 109.47282 * 155.95771 * 3 2 1 7 7 C 1.38888 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00574 * 348.46694 * 7 2 1 9 9 N 1.37211 * 119.99873 * 168.46638 * 7 2 1 10 10 C 1.34781 * 120.00320 * 125.11967 * 9 7 2 11 11 O 1.21269 * 120.00060 * 183.32915 * 10 9 7 12 12 C 1.50698 * 119.99792 * 3.32900 * 10 9 7 13 13 C 1.53785 * 113.61565 * 275.55556 * 12 10 9 14 14 C 1.53956 * 87.01712 * 220.04877 * 13 12 10 15 15 C 1.53773 * 113.61421 * 177.94443 * 12 10 9 16 16 C 1.39424 * 119.99912 * 305.11997 * 9 7 2 17 17 C 1.39063 * 119.69811 * 5.02217 * 16 9 7 18 18 C 1.38384 * 119.09827 * 179.97438 * 17 16 9 19 19 C 1.38823 * 118.49233 * 359.74560 * 18 17 16 20 20 C 1.38143 * 119.31197 * 0.49427 * 19 18 17 21 21 N 1.31879 * 120.85119 * 359.50012 * 20 19 18 22 22 H 0.97001 * 119.99802 * 0.02562 * 1 2 3 23 23 H 1.09006 * 112.84878 * 46.74584 * 12 10 9 24 24 H 1.08999 * 113.61096 * 334.56589 * 13 12 10 25 25 H 1.08994 * 113.61589 * 105.46733 * 13 12 10 26 26 H 1.09004 * 113.53211 * 270.81025 * 14 13 12 27 27 H 1.08996 * 113.74266 * 139.94025 * 14 13 12 28 28 H 1.09004 * 113.61882 * 254.52836 * 15 12 10 29 29 H 1.09002 * 113.61987 * 25.35070 * 15 12 10 30 30 H 1.07994 * 120.45058 * 359.95245 * 17 16 9 31 31 H 1.08004 * 120.75243 * 180.02562 * 18 17 16 32 32 H 1.08008 * 120.34248 * 180.27152 * 19 18 17 33 33 H 1.08007 * 119.57387 * 179.76774 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3698 2.1190 -1.3925 5 1 1.5142 2.6130 0.8221 6 1 3.6030 1.4071 0.5704 7 6 2.0085 -1.2029 0.0005 8 1 1.4849 -2.1287 0.1880 9 7 3.3598 -1.2150 -0.2370 10 6 4.1948 -1.7932 0.6491 11 8 5.3933 -1.7512 0.4694 12 6 3.6388 -2.4919 1.8631 13 6 3.3509 -1.5455 3.0406 14 6 3.9069 -2.6492 3.9588 15 6 4.7162 -3.1413 2.7474 16 6 3.8693 -0.6293 -1.3952 17 6 3.0163 0.0566 -2.2530 18 6 3.5353 0.6336 -3.3987 19 6 4.8958 0.5089 -3.6451 20 6 5.6835 -0.1909 -2.7518 21 7 5.1609 -0.7305 -1.6678 22 1 -0.4850 0.8401 -0.0004 23 1 2.8092 -3.1578 1.6253 24 1 3.9568 -0.6395 3.0307 25 1 2.2901 -1.3449 3.1903 26 1 3.1499 -3.3577 4.2952 27 1 4.5255 -2.2722 4.7732 28 1 4.7560 -4.2272 2.6608 29 1 5.6964 -2.6733 2.6562 30 1 1.9631 0.1374 -2.0283 31 1 2.8971 1.1727 -4.0833 32 1 5.3332 0.9514 -4.5280 33 1 6.7418 -0.2937 -2.9413 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892470486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:01 Heat of formation + Delta-G solvation = 47.258108 kcal Electronic energy + Delta-G solvation = -18213.441156 eV Core-core repulsion = 15433.977458 eV Total energy + Delta-G solvation = -2779.463698 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.24800 -38.82188 -36.70622 -35.10400 -32.39384 -31.50675 -29.69030 -26.22805 -25.29151 -25.08081 -22.80246 -22.13374 -19.89516 -18.93749 -17.97477 -16.67638 -15.95192 -15.55971 -15.03096 -14.64672 -14.52766 -14.19532 -13.63045 -13.31528 -12.77557 -12.69611 -12.40279 -11.99309 -11.87708 -11.66889 -11.36668 -11.08891 -10.60545 -10.56484 -10.24566 -9.99165 -9.83029 -9.57953 -9.25480 -9.13374 -8.68934 -8.13860 -7.23305 -6.62045 -4.52080 1.84995 2.03808 3.05218 3.16615 3.26339 3.64203 3.95132 4.06689 4.58344 4.81329 5.10235 5.14551 5.23285 5.36329 5.44604 5.49315 5.76631 5.84635 5.95893 6.05264 6.16672 6.19097 6.25389 6.33166 6.51105 6.54167 6.64255 6.72370 6.91170 6.93566 7.16951 7.50706 7.96267 8.07968 8.59946 8.81361 9.13498 9.54955 10.42439 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.011600 C = 0.008421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.551947 B = 2413.257696 C = 3324.130086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.084 3.916 3 Si 0.862 3.138 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.357 4.357 8 H 0.111 0.889 9 N -0.410 5.410 10 C 0.507 3.493 11 O -0.516 6.516 12 C -0.109 4.109 13 C -0.113 4.113 14 C -0.143 4.143 15 C -0.124 4.124 16 C 0.359 3.641 17 C -0.208 4.208 18 C -0.060 4.060 19 C -0.236 4.236 20 C 0.118 3.882 21 N -0.490 5.490 22 H 0.279 0.721 23 H 0.110 0.890 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.152 0.848 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 -0.247 0.277 4.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.126 4.126 3 Si 0.687 3.313 4 H -0.180 1.180 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.484 4.484 8 H 0.129 0.871 9 N -0.123 5.123 10 C 0.297 3.703 11 O -0.390 6.390 12 C -0.130 4.130 13 C -0.151 4.151 14 C -0.180 4.180 15 C -0.162 4.162 16 C 0.129 3.871 17 C -0.232 4.232 18 C -0.086 4.086 19 C -0.258 4.258 20 C -0.042 4.042 21 N -0.206 5.206 22 H 0.090 0.910 23 H 0.128 0.872 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.169 0.831 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.943 -0.649 0.903 5.067 hybrid contribution -0.486 1.469 -0.771 1.728 sum 4.457 0.819 0.132 4.533 Atomic orbital electron populations 1.69678 1.06007 1.28594 1.44453 1.25471 0.95192 0.98607 0.93300 0.87216 0.81091 0.83294 0.79685 1.17978 1.20920 1.18759 1.18965 0.79696 0.96000 1.53736 0.87125 1.41659 1.07978 1.49170 1.13483 1.20976 0.86076 0.79672 0.83624 1.90639 1.15088 1.58336 1.74978 1.22438 0.99546 0.98893 0.92146 1.22672 1.02018 0.96620 0.93762 1.22869 0.99632 0.98894 0.96625 1.22859 0.98543 0.99966 0.94793 1.19286 0.88514 0.91583 0.87689 1.21920 1.02746 1.02149 0.96369 1.21259 0.95052 0.96509 0.95799 1.21784 0.94959 1.06521 1.02553 1.22497 0.99525 0.92875 0.89269 1.67728 1.11918 1.21716 1.19239 0.91013 0.87158 0.90700 0.90306 0.90292 0.91777 0.91774 0.89229 0.83083 0.85753 0.86043 0.83695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.28 13.96 55.49 0.77 -21.50 16 2 C 0.08 2.13 4.02 -17.49 -0.07 2.06 16 3 Si 0.86 20.58 24.20 -169.99 -4.11 16.47 16 4 H -0.25 -5.83 6.04 56.52 0.34 -5.49 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.36 -9.06 8.16 -14.90 -0.12 -9.18 16 8 H 0.11 2.90 7.57 -52.48 -0.40 2.50 16 9 N -0.41 -10.30 2.14 -60.71 -0.13 -10.43 16 10 C 0.51 12.19 7.12 -10.98 -0.08 12.11 16 11 O -0.52 -13.38 14.17 5.57 0.08 -13.30 16 12 C -0.11 -2.14 3.07 -90.96 -0.28 -2.42 16 13 C -0.11 -2.02 7.61 -25.82 -0.20 -2.22 16 14 C -0.14 -2.07 8.09 -25.83 -0.21 -2.28 16 15 C -0.12 -2.05 7.42 -25.92 -0.19 -2.24 16 16 C 0.36 8.92 5.98 -154.64 -0.93 7.99 16 17 C -0.21 -4.77 5.81 -39.22 -0.23 -5.00 16 18 C -0.06 -1.15 10.06 -39.31 -0.40 -1.55 16 19 C -0.24 -4.14 10.11 -39.40 -0.40 -4.54 16 20 C 0.12 2.30 11.18 -17.57 -0.20 2.11 16 21 N -0.49 -11.84 7.91 -12.34 -0.10 -11.94 16 22 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 23 H 0.11 2.09 7.53 -51.93 -0.39 1.70 16 24 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 25 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.60 7.41 -51.93 -0.38 1.22 16 30 H 0.15 3.62 4.68 -52.49 -0.25 3.38 16 31 H 0.12 1.97 8.06 -52.48 -0.42 1.55 16 32 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 33 H 0.15 2.32 8.06 -52.48 -0.42 1.89 16 LS Contribution 271.58 15.07 4.09 4.09 Total: -1.00 -29.72 271.58 -6.68 -36.40 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.99 Total: 5.36 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.29 Total: -5.15 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.55 Total: -43.87 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.11 Total: 16.47 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.72 -6.68 -36.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892470486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.660 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds