Wall clock time and date at job start Sun Mar 29 2020 22:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39828 * 120.07573 * 81.85062 * 3 2 1 5 5 C 1.37635 * 119.92213 * 179.69813 * 4 3 2 6 6 C 1.39194 * 120.07610 * 0.55097 * 5 4 3 7 7 N 1.39190 * 119.92324 * 179.72226 * 6 5 4 8 8 C 1.46496 * 119.99874 * 359.72597 * 7 6 5 9 9 C 1.53006 * 109.46995 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47184 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99819 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00046 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00192 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47418 * 89.99710 * 14 12 10 16 16 H 1.48498 * 109.47091 * 209.99770 * 14 12 10 17 17 H 1.48508 * 109.47394 * 329.99535 * 14 12 10 18 18 C 1.39152 * 120.15226 * 359.44771 * 6 5 4 19 19 C 1.50697 * 119.96530 * 180.29843 * 18 6 5 20 20 O 1.42904 * 109.47345 * 180.02562 * 19 18 6 21 21 C 1.37672 * 120.07523 * 0.27355 * 18 6 5 22 22 H 1.07994 * 120.03676 * 359.97438 * 4 3 2 23 23 H 1.07997 * 119.95739 * 180.29339 * 5 4 3 24 24 H 0.96998 * 119.99934 * 179.72967 * 7 6 5 25 25 H 1.09001 * 109.47464 * 60.00536 * 8 7 6 26 26 H 1.09001 * 109.47459 * 300.00252 * 8 7 6 27 27 H 1.09001 * 109.47002 * 299.99701 * 9 8 7 28 28 H 1.08993 * 109.46955 * 60.00138 * 9 8 7 29 29 H 0.96996 * 120.00505 * 179.97438 * 13 12 10 30 30 H 1.09005 * 109.46719 * 299.99559 * 19 18 6 31 31 H 1.08996 * 109.47531 * 59.99647 * 19 18 6 32 32 H 0.96703 * 113.99601 * 179.97438 * 20 19 18 33 33 H 1.07996 * 120.04054 * 179.97438 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.1706 -1.1978 5 6 4.6451 -0.1632 -1.1950 6 6 5.3394 0.0029 -0.0001 7 7 6.7313 0.0041 -0.0002 8 6 7.4638 -0.1754 -1.2561 9 6 8.9681 -0.1352 -0.9794 10 6 9.7217 -0.3192 -2.2714 11 1 9.1817 -0.4521 -3.1973 12 6 11.1004 -0.3190 -2.2713 13 7 11.7580 -0.1577 -1.1439 14 14 12.0345 -0.5478 -3.8728 15 1 12.2818 0.7775 -4.4954 16 1 13.3321 -1.2155 -3.5978 17 1 11.2321 -1.3876 -4.7983 18 6 4.6452 0.1736 1.1937 19 6 5.4012 0.3598 2.4840 20 8 4.4746 0.5128 3.5612 21 6 3.2685 0.1730 1.1974 22 1 2.7307 -0.3040 -2.1246 23 1 5.1870 -0.2907 -2.1205 24 1 7.2163 0.1237 0.8313 25 1 7.1999 0.6242 -1.9483 26 1 7.2013 -1.1378 -1.6956 27 1 9.2310 0.8270 -0.5398 28 1 9.2318 -0.9350 -0.2875 29 1 12.7279 -0.1579 -1.1438 30 1 6.0289 -0.5124 2.6664 31 1 6.0269 1.2495 2.4134 32 1 4.8922 0.6369 4.4245 33 1 2.7303 0.3051 2.1243 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893128664.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:43 Heat of formation + Delta-G solvation = -9.991128 kcal Electronic energy + Delta-G solvation = -16406.315179 eV Core-core repulsion = 13624.368968 eV Total energy + Delta-G solvation = -2781.946211 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.85157 -36.92665 -36.66330 -35.39156 -33.25409 -31.74248 -30.66591 -28.52155 -26.13948 -24.97077 -22.48224 -22.16163 -20.55451 -18.36185 -17.70575 -17.08890 -16.21937 -15.40804 -15.19189 -14.62577 -14.45260 -14.24841 -13.93384 -13.78777 -13.70847 -13.41293 -12.51789 -12.41575 -12.33542 -12.32980 -11.49906 -11.37429 -11.18056 -10.82517 -10.71061 -10.65552 -10.41918 -9.74339 -9.64103 -9.42663 -8.79924 -8.54687 -7.23679 -6.20363 -4.24373 1.12655 1.45153 2.83911 3.11634 3.21647 3.28660 3.30978 3.67225 4.02649 4.06611 4.15539 4.32905 4.81678 5.02260 5.17135 5.21720 5.31621 5.38374 5.54686 5.68298 6.01401 6.06105 6.08950 6.25008 6.34321 6.47002 6.52899 6.80056 7.25751 7.46060 7.47718 7.51756 7.68098 7.77545 7.86401 8.16332 8.81275 9.41447 10.91147 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.004262 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.450337 B = 6568.163004 C = 7418.863464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.274 3.726 3 C -0.122 4.122 4 C -0.015 4.015 5 C -0.205 4.205 6 C 0.266 3.734 7 N -0.724 5.724 8 C 0.117 3.883 9 C 0.013 3.987 10 C -0.525 4.525 11 H 0.060 0.940 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.188 4.188 19 C 0.127 3.873 20 O -0.569 6.569 21 C 0.006 3.994 22 H 0.127 0.873 23 H 0.136 0.864 24 H 0.400 0.600 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.263 0.737 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.382 0.618 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.176 0.785 5.518 11.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.040 4.040 3 C -0.128 4.128 4 C -0.036 4.036 5 C -0.228 4.228 6 C 0.154 3.846 7 N -0.347 5.347 8 C -0.005 4.005 9 C -0.025 4.025 10 C -0.564 4.564 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.725 3.275 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.194 4.194 19 C 0.049 3.951 20 O -0.375 6.375 21 C -0.015 4.015 22 H 0.145 0.855 23 H 0.154 0.846 24 H 0.235 0.765 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.229 0.771 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.011 0.691 4.894 12.988 hybrid contribution 1.793 -0.007 -0.101 1.796 sum -10.218 0.684 4.793 11.307 Atomic orbital electron populations 1.81197 1.12302 1.11540 1.08065 1.25767 0.92654 0.92478 0.93102 1.15713 0.84002 1.17865 0.95264 1.20845 0.93447 0.93155 0.96192 1.20564 0.93588 1.11400 0.97237 1.17911 0.84444 0.89442 0.92805 1.45401 1.02094 1.75331 1.11839 1.21878 0.94938 0.99884 0.83802 1.19292 0.87061 0.97952 0.98164 1.21005 0.91290 1.50708 0.93380 0.92226 1.24996 0.97810 0.94869 0.96537 1.69941 1.07863 1.49487 1.25809 0.86510 0.79268 0.78402 0.83361 1.20511 1.21128 1.19695 1.18945 0.93697 1.13893 0.92828 1.20645 0.90115 0.99751 0.84562 1.86406 1.36348 1.96165 1.18582 1.20600 0.92759 0.91741 0.96384 0.85483 0.84618 0.76542 0.92537 0.92539 0.95929 0.95917 0.92722 0.92564 0.92552 0.77058 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.06 18.54 41.84 0.78 -6.29 16 2 C 0.27 3.75 15.33 -22.47 -0.34 3.41 16 3 C -0.12 -1.52 5.74 -106.80 -0.61 -2.14 16 4 C -0.01 -0.17 9.75 -39.21 -0.38 -0.56 16 5 C -0.20 -2.61 9.28 -39.45 -0.37 -2.98 16 6 C 0.27 3.59 6.63 -83.82 -0.56 3.03 16 7 N -0.72 -10.61 5.65 -58.62 -0.33 -10.94 16 8 C 0.12 2.06 4.84 -4.04 -0.02 2.04 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C -0.53 -13.49 9.11 -34.44 -0.31 -13.80 16 11 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 14 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 C -0.19 -2.36 5.89 -104.49 -0.62 -2.97 16 19 C 0.13 1.32 6.17 36.00 0.22 1.54 16 20 O -0.57 -5.53 12.13 -35.23 -0.43 -5.95 16 21 C 0.01 0.08 9.08 -39.21 -0.36 -0.28 16 22 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 23 H 0.14 1.68 6.70 -52.49 -0.35 1.33 16 24 H 0.40 5.47 7.13 -40.82 -0.29 5.18 16 25 H 0.06 0.98 7.92 -51.93 -0.41 0.57 16 26 H 0.06 0.98 7.95 -51.93 -0.41 0.57 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 32 H 0.38 1.93 9.12 45.56 0.42 2.35 16 33 H 0.14 1.63 6.99 -52.49 -0.37 1.27 16 LS Contribution 295.11 15.07 4.45 4.45 Total: -1.00 -29.54 295.11 -6.47 -36.01 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -3.06 Total: 2.74 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.58 Total: -11.06 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 1.18 Total: -41.44 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.43 Total: -5.95 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.54 -6.47 -36.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893128664.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.018 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds