Wall clock time and date at job start Sun Mar 29 2020 22:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39828 * 120.07573 * 81.85062 * 3 2 1 5 5 C 1.37635 * 119.92213 * 179.69813 * 4 3 2 6 6 C 1.39194 * 120.07610 * 0.55097 * 5 4 3 7 7 N 1.39190 * 119.92324 * 179.72226 * 6 5 4 8 8 C 1.46496 * 119.99874 * 359.72597 * 7 6 5 9 9 C 1.53006 * 109.46995 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47184 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99819 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00046 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00192 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47418 * 89.99710 * 14 12 10 16 16 H 1.48498 * 109.47091 * 209.99770 * 14 12 10 17 17 H 1.48508 * 109.47394 * 329.99535 * 14 12 10 18 18 C 1.39152 * 120.15226 * 359.44771 * 6 5 4 19 19 C 1.50697 * 119.96530 * 180.29843 * 18 6 5 20 20 O 1.42904 * 109.47345 * 180.02562 * 19 18 6 21 21 C 1.37672 * 120.07523 * 0.27355 * 18 6 5 22 22 H 1.07994 * 120.03676 * 359.97438 * 4 3 2 23 23 H 1.07997 * 119.95739 * 180.29339 * 5 4 3 24 24 H 0.96998 * 119.99934 * 179.72967 * 7 6 5 25 25 H 1.09001 * 109.47464 * 60.00536 * 8 7 6 26 26 H 1.09001 * 109.47459 * 300.00252 * 8 7 6 27 27 H 1.09001 * 109.47002 * 299.99701 * 9 8 7 28 28 H 1.08993 * 109.46955 * 60.00138 * 9 8 7 29 29 H 0.96996 * 120.00505 * 179.97438 * 13 12 10 30 30 H 1.09005 * 109.46719 * 299.99559 * 19 18 6 31 31 H 1.08996 * 109.47531 * 59.99647 * 19 18 6 32 32 H 0.96703 * 113.99601 * 179.97438 * 20 19 18 33 33 H 1.07996 * 120.04054 * 179.97438 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.1706 -1.1978 5 6 4.6451 -0.1632 -1.1950 6 6 5.3394 0.0029 -0.0001 7 7 6.7313 0.0041 -0.0002 8 6 7.4638 -0.1754 -1.2561 9 6 8.9681 -0.1352 -0.9794 10 6 9.7217 -0.3192 -2.2714 11 1 9.1817 -0.4521 -3.1973 12 6 11.1004 -0.3190 -2.2713 13 7 11.7580 -0.1577 -1.1439 14 14 12.0345 -0.5478 -3.8728 15 1 12.2818 0.7775 -4.4954 16 1 13.3321 -1.2155 -3.5978 17 1 11.2321 -1.3876 -4.7983 18 6 4.6452 0.1736 1.1937 19 6 5.4012 0.3598 2.4840 20 8 4.4746 0.5128 3.5612 21 6 3.2685 0.1730 1.1974 22 1 2.7307 -0.3040 -2.1246 23 1 5.1870 -0.2907 -2.1205 24 1 7.2163 0.1237 0.8313 25 1 7.1999 0.6242 -1.9483 26 1 7.2013 -1.1378 -1.6956 27 1 9.2310 0.8270 -0.5398 28 1 9.2318 -0.9350 -0.2875 29 1 12.7279 -0.1579 -1.1438 30 1 6.0289 -0.5124 2.6664 31 1 6.0269 1.2495 2.4134 32 1 4.8922 0.6369 4.4245 33 1 2.7303 0.3051 2.1243 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893128664.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:43 Heat of formation + Delta-G solvation = -29.371548 kcal Electronic energy + Delta-G solvation = -16407.155577 eV Core-core repulsion = 13624.368968 eV Total energy + Delta-G solvation = -2782.786609 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.86053 -37.97687 -37.60355 -36.62469 -35.02884 -32.84269 -32.00941 -29.88123 -27.02537 -26.62481 -23.82285 -23.30903 -21.85597 -19.32367 -18.85492 -18.42603 -17.62978 -16.63127 -16.32432 -16.12595 -15.54658 -15.41439 -15.11984 -14.81937 -14.81387 -14.51736 -14.15200 -13.64669 -13.57235 -13.38995 -13.12234 -12.86701 -12.50014 -12.34033 -12.24158 -11.83009 -11.50230 -11.33407 -11.19729 -10.89043 -10.52776 -9.74165 -8.33644 -8.21419 -6.31273 0.09645 0.48578 1.44756 1.45607 1.55889 1.74488 2.05378 2.36838 2.57893 3.01613 3.09469 3.14691 3.32828 3.90732 4.07408 4.37696 4.40909 4.48246 4.56584 4.58900 4.61249 4.79458 4.95321 5.10236 5.24904 5.34996 5.46377 5.49519 5.64232 5.75130 5.84213 6.14328 6.34568 6.59776 6.76000 6.86228 6.95735 7.38768 8.90557 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.004262 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.450337 B = 6568.163004 C = 7418.863464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.292 3.708 3 C -0.122 4.122 4 C -0.007 4.007 5 C -0.210 4.210 6 C 0.255 3.745 7 N -0.727 5.727 8 C 0.139 3.861 9 C 0.018 3.982 10 C -0.540 4.540 11 H 0.067 0.933 12 C 0.004 3.996 13 N -0.930 5.930 14 Si 0.962 3.038 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.261 1.261 18 C -0.189 4.189 19 C 0.127 3.873 20 O -0.581 6.581 21 C 0.004 3.996 22 H 0.150 0.850 23 H 0.141 0.859 24 H 0.403 0.597 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.002 0.998 28 H 0.002 0.998 29 H 0.264 0.736 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.402 0.598 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 0.684 4.816 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.021 4.021 3 C -0.128 4.128 4 C -0.028 4.028 5 C -0.233 4.233 6 C 0.145 3.855 7 N -0.351 5.351 8 C 0.015 3.985 9 C -0.019 4.019 10 C -0.579 4.579 11 H 0.086 0.914 12 C -0.194 4.194 13 N -0.570 5.570 14 Si 0.787 3.213 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.186 1.186 18 C -0.194 4.194 19 C 0.050 3.950 20 O -0.390 6.390 21 C -0.017 4.017 22 H 0.168 0.832 23 H 0.158 0.842 24 H 0.239 0.761 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.253 0.747 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.629 0.593 4.211 13.326 hybrid contribution 1.918 0.036 0.189 1.928 sum -10.711 0.629 4.399 11.596 Atomic orbital electron populations 1.81219 1.13274 1.12783 1.09170 1.25855 0.92653 0.91505 0.92083 1.15780 0.83331 1.17928 0.95748 1.21032 0.93066 0.91935 0.96794 1.20708 0.94067 1.11332 0.97198 1.18038 0.83707 0.90162 0.93614 1.45106 1.02578 1.76530 1.10900 1.21409 0.91784 1.00264 0.85018 1.19129 0.90459 0.95869 0.96467 1.21517 0.91884 1.49692 0.94796 0.91444 1.25874 0.99043 0.94797 0.99704 1.70062 1.08065 1.50946 1.27939 0.85487 0.77787 0.78496 0.79535 1.20000 1.21219 1.18559 1.19151 0.93799 1.12971 0.93468 1.20621 0.89961 1.00349 0.84091 1.86355 1.36819 1.96191 1.19640 1.20665 0.92783 0.91718 0.96554 0.83191 0.84172 0.76146 0.92148 0.92177 0.97998 0.97983 0.92768 0.91911 0.91897 0.74749 0.84386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.60 18.54 19.00 0.35 -14.24 16 2 C 0.29 7.54 15.33 88.33 1.35 8.90 16 3 C -0.12 -2.80 5.74 -21.27 -0.12 -2.92 16 4 C -0.01 -0.15 9.75 22.51 0.22 0.07 16 5 C -0.21 -4.93 9.28 22.36 0.21 -4.73 16 6 C 0.25 6.47 6.63 38.42 0.25 6.73 16 7 N -0.73 -20.58 5.65 -339.38 -1.92 -22.50 16 8 C 0.14 4.74 4.84 86.38 0.42 5.16 16 9 C 0.02 0.83 5.09 29.85 0.15 0.98 16 10 C -0.54 -27.63 9.11 25.60 0.23 -27.40 16 11 H 0.07 3.26 7.74 -2.91 -0.02 3.24 16 12 C 0.00 0.23 5.46 84.65 0.46 0.69 16 13 N -0.93 -52.66 13.29 21.45 0.28 -52.37 16 14 Si 0.96 41.24 29.54 68.60 2.03 43.27 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 16 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 18 C -0.19 -4.42 5.89 -19.78 -0.12 -4.53 16 19 C 0.13 2.45 6.17 71.24 0.44 2.89 16 20 O -0.58 -10.23 12.13 -148.98 -1.81 -12.03 16 21 C 0.00 0.09 9.08 22.51 0.20 0.30 16 22 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 23 H 0.14 3.16 6.70 -2.91 -0.02 3.14 16 24 H 0.40 10.81 7.13 -92.71 -0.66 10.14 16 25 H 0.06 2.02 7.92 -2.39 -0.02 2.00 16 26 H 0.06 2.01 7.95 -2.39 -0.02 1.99 16 27 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.06 1.13 8.05 -2.38 -0.02 1.11 16 31 H 0.06 1.13 8.05 -2.39 -0.02 1.12 16 32 H 0.40 3.29 9.12 -74.06 -0.68 2.62 16 33 H 0.14 3.12 6.99 -2.91 -0.02 3.10 16 Total: -1.00 -62.05 295.11 2.46 -59.60 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -0.19 Total: 12.14 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 3.71 Total: -13.85 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -1.28 Total: -89.11 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.81 Total: -12.03 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -62.05 2.46 -59.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893128664.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.224 kcal (2) G-P(sol) polarization free energy of solvation -62.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds