Wall clock time and date at job start Sun Mar 29 2020 22:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86801 * 120.00048 * 2 1 4 4 H 1.48493 * 109.47438 * 270.00430 * 3 2 1 5 5 H 1.48509 * 109.46826 * 30.00238 * 3 2 1 6 6 H 1.48501 * 109.47204 * 149.99603 * 3 2 1 7 7 C 1.38755 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99835 * 0.02562 * 7 2 1 9 9 O 1.34915 * 119.99982 * 179.97438 * 7 2 1 10 10 C 1.34315 * 116.99990 * 179.97438 * 9 7 2 11 11 O 1.21210 * 119.99913 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00000 * 180.02562 * 10 9 7 13 13 H 1.08994 * 109.25319 * 60.53156 * 12 10 9 14 14 C 1.52737 * 109.25545 * 180.02562 * 12 10 9 15 15 C 1.53322 * 108.39020 * 171.42092 * 14 12 10 16 16 C 1.52731 * 108.39812 * 290.15595 * 15 14 12 17 17 C 1.50631 * 110.59135 * 51.10027 * 16 15 14 18 18 C 1.38913 * 117.75296 * 162.33381 * 17 16 15 19 19 C 1.37932 * 120.54239 * 179.67906 * 18 17 16 20 20 C 1.38262 * 119.77511 * 359.89817 * 19 18 17 21 21 C 1.37935 * 119.77012 * 0.13725 * 20 19 18 22 22 C 1.37668 * 122.56166 * 342.11732 * 17 16 15 23 23 H 0.96994 * 120.00106 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.67992 * 51.69271 * 14 12 10 25 25 H 1.08997 * 109.70812 * 291.16708 * 14 12 10 26 26 H 1.09001 * 109.67565 * 170.42718 * 15 14 12 27 27 H 1.09004 * 109.70687 * 49.90008 * 15 14 12 28 28 H 1.08996 * 109.25385 * 290.81707 * 16 15 14 29 29 H 1.08993 * 109.24915 * 171.38422 * 16 15 14 30 30 H 1.07995 * 119.72399 * 359.66106 * 18 17 16 31 31 H 1.08004 * 120.11630 * 179.87638 * 19 18 17 32 32 H 1.08002 * 120.11730 * 180.11874 * 20 19 18 33 33 H 1.08009 * 119.72802 * 179.76354 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6527 0.7001 6 1 3.5460 1.4402 0.7001 7 6 2.0082 -1.2016 -0.0005 8 1 1.4682 -2.1370 -0.0014 9 8 3.3574 -1.2016 -0.0011 10 6 3.9672 -2.3983 -0.0010 11 8 3.3071 -3.4149 -0.0010 12 6 5.4721 -2.4771 -0.0010 13 1 5.8575 -1.9904 0.8948 14 6 5.8997 -3.9434 -0.0016 15 6 7.4163 -4.0049 -0.2186 16 6 7.7152 -3.5820 -1.6554 17 6 7.0425 -2.2722 -1.9730 18 6 7.4977 -1.5620 -3.0766 19 6 6.9187 -0.3591 -3.4237 20 6 5.8752 0.1437 -2.6688 21 6 5.4222 -0.5596 -1.5721 22 6 6.0063 -1.7694 -1.2187 23 1 -0.4850 0.8400 -0.0004 24 1 5.3917 -4.4736 -0.8072 25 1 5.6469 -4.4004 0.9551 26 1 7.7695 -5.0230 -0.0546 27 1 7.9146 -3.3274 0.4747 28 1 7.3501 -4.3484 -2.3391 29 1 8.7923 -3.4726 -1.7811 30 1 8.3119 -1.9548 -3.6675 31 1 7.2795 0.1883 -4.2819 32 1 5.4165 1.0841 -2.9367 33 1 4.6095 -0.1643 -0.9807 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912698514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:14 Heat of formation + Delta-G solvation = -66.341371 kcal Electronic energy + Delta-G solvation = -17887.716360 eV Core-core repulsion = 15071.033868 eV Total energy + Delta-G solvation = -2816.682492 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.31089 -38.71403 -36.19705 -35.00448 -32.63838 -32.15888 -30.03510 -28.76793 -25.85248 -23.89402 -22.46240 -22.20263 -20.07750 -18.98881 -18.03286 -16.88989 -16.21598 -15.43685 -15.25670 -14.88523 -14.55179 -14.17851 -13.68760 -13.44300 -13.00378 -12.66738 -12.51910 -12.28851 -12.25140 -11.83672 -11.49983 -11.22413 -11.09687 -10.79896 -10.55498 -10.42125 -10.29316 -10.15000 -9.64336 -9.26675 -8.68330 -8.45461 -8.29994 -6.37044 -4.12347 1.56941 1.65814 3.11725 3.21504 3.31027 3.38761 3.90627 4.19296 4.23353 4.73693 4.83985 5.06936 5.08887 5.18715 5.20399 5.28583 5.42750 5.56264 5.65902 5.67484 5.76978 5.93926 6.00574 6.06701 6.19673 6.27404 6.39806 6.47587 6.54634 6.71452 6.89978 6.93317 7.30811 7.73533 8.05209 8.61792 9.01696 9.67414 10.71959 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.024609 B = 0.008897 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.535980 B = 3146.437952 C = 4018.582891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.067 3.933 3 Si 0.893 3.107 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.382 4.382 8 H 0.109 0.891 9 O -0.249 6.249 10 C 0.418 3.582 11 O -0.533 6.533 12 C -0.033 4.033 13 H 0.107 0.893 14 C -0.101 4.101 15 C -0.118 4.118 16 C -0.080 4.080 17 C -0.073 4.073 18 C -0.131 4.131 19 C -0.120 4.120 20 C -0.127 4.127 21 C -0.109 4.109 22 C -0.072 4.072 23 H 0.279 0.721 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.812 -1.624 -3.456 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.458 4.458 8 H 0.127 0.873 9 O -0.158 6.158 10 C 0.264 3.736 11 O -0.427 6.427 12 C -0.052 4.052 13 H 0.124 0.876 14 C -0.139 4.139 15 C -0.156 4.156 16 C -0.117 4.117 17 C -0.073 4.073 18 C -0.149 4.149 19 C -0.138 4.138 20 C -0.145 4.145 21 C -0.127 4.127 22 C -0.073 4.073 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 16.432 -1.751 -3.454 16.882 hybrid contribution 0.033 0.913 -0.097 0.919 sum 16.464 -0.838 -3.551 16.864 Atomic orbital electron populations 1.69596 1.05659 1.28297 1.47885 1.24514 0.94971 0.98406 0.95716 0.86416 0.80560 0.82020 0.79163 1.19566 1.20666 1.18131 1.20681 0.76319 0.96947 1.51831 0.87296 1.83490 1.23795 1.31293 1.77242 1.22767 0.90002 0.82656 0.78224 1.90592 1.66727 1.36238 1.49174 1.19814 0.89860 0.97768 0.97793 0.87574 1.21406 0.95015 0.93698 1.03733 1.21571 0.96176 1.01503 0.96314 1.20478 0.99576 0.94187 0.97411 1.19540 0.96078 0.96393 0.95275 1.21007 1.00893 0.95688 0.97330 1.21041 0.96869 0.96293 0.99632 1.21115 0.97205 1.00281 0.95856 1.22028 0.99427 0.94067 0.97164 1.19278 0.96221 0.95354 0.96400 0.91065 0.90433 0.90709 0.91104 0.91534 0.90626 0.90949 0.86476 0.86430 0.86196 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.02 13.96 55.48 0.77 -25.24 16 2 C 0.07 1.93 5.49 -17.53 -0.10 1.84 16 3 Si 0.89 21.13 27.87 -169.99 -4.74 16.39 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.38 -11.36 10.10 30.92 0.31 -11.04 16 8 H 0.11 3.59 7.09 -52.48 -0.37 3.22 16 9 O -0.25 -6.51 5.56 -20.70 -0.12 -6.63 16 10 C 0.42 9.99 7.01 36.01 0.25 10.25 16 11 O -0.53 -14.30 15.07 -19.05 -0.29 -14.59 16 12 C -0.03 -0.60 2.70 -93.09 -0.25 -0.85 16 13 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 14 C -0.10 -1.54 4.66 -26.70 -0.12 -1.66 16 15 C -0.12 -1.35 5.98 -26.70 -0.16 -1.51 16 16 C -0.08 -0.92 5.67 -28.05 -0.16 -1.08 16 17 C -0.07 -1.07 5.74 -104.61 -0.60 -1.67 16 18 C -0.13 -1.76 9.61 -39.44 -0.38 -2.13 16 19 C -0.12 -1.67 10.05 -39.68 -0.40 -2.07 16 20 C -0.13 -2.06 10.05 -39.68 -0.40 -2.46 16 21 C -0.11 -2.07 8.95 -39.44 -0.35 -2.43 16 22 C -0.07 -1.27 5.42 -104.61 -0.57 -1.84 16 23 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.08 1.30 7.78 -51.93 -0.40 0.90 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 30 H 0.12 1.23 8.05 -52.49 -0.42 0.81 16 31 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.15 3.20 4.35 -52.48 -0.23 2.97 16 LS Contribution 275.67 15.07 4.15 4.15 Total: -1.00 -32.26 275.67 -7.07 -39.33 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.94 Total: 3.25 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.92 Total: -16.67 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.77 Total: -25.24 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.40 Total: -21.22 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.74 Total: 16.39 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.26 -7.07 -39.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912698514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.008 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds