Wall clock time and date at job start Sun Mar 29 2020 22:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86803 * 120.00309 * 2 1 4 4 H 1.48502 * 109.46537 * 274.97453 * 3 2 1 5 5 H 1.48498 * 109.46955 * 34.96980 * 3 2 1 6 6 H 1.48501 * 109.46964 * 154.97688 * 3 2 1 7 7 C 1.40058 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99622 * 173.56364 * 7 2 1 9 9 C 1.46377 * 119.99610 * 353.56320 * 7 2 1 10 10 O 1.21679 * 120.00403 * 6.32119 * 9 7 2 11 11 N 1.34770 * 119.99409 * 186.31707 * 9 7 2 12 12 C 1.46507 * 120.00077 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.46509 * 343.20421 * 12 11 9 14 14 C 1.50695 * 109.47332 * 223.20645 * 12 11 9 15 15 C 1.38227 * 119.62006 * 115.30785 * 14 12 11 16 16 C 1.38625 * 119.16248 * 180.02562 * 15 14 12 17 17 C 1.38672 * 118.42032 * 359.97438 * 16 15 14 18 18 C 1.38177 * 119.16550 * 0.02562 * 17 16 15 19 19 N 1.31859 * 119.62170 * 295.33014 * 14 12 11 20 20 C 1.52999 * 109.47200 * 103.20228 * 12 11 9 21 21 C 1.53002 * 117.49907 * 8.75331 * 20 12 11 22 22 C 1.53002 * 117.50014 * 300.09316 * 20 12 11 23 23 H 0.97003 * 119.99954 * 0.02562 * 1 2 3 24 24 H 0.97010 * 120.00466 * 0.02562 * 11 9 7 25 25 H 1.07999 * 120.42024 * 359.97438 * 15 14 12 26 26 H 1.08001 * 120.79047 * 180.02562 * 16 15 14 27 27 H 1.08001 * 120.41802 * 179.97438 * 17 16 15 28 28 H 1.08000 * 119.62018 * 180.02562 * 18 17 16 29 29 H 1.08995 * 115.54974 * 154.41723 * 20 12 11 30 30 H 1.09006 * 117.49807 * 359.97438 * 21 20 12 31 31 H 1.08993 * 117.49815 * 145.01993 * 21 20 12 32 32 H 1.08997 * 117.49239 * 214.97883 * 22 20 12 33 33 H 1.08994 * 117.49736 * 359.97438 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3831 2.1070 -1.3949 5 1 1.4947 2.6200 0.8024 6 1 3.5870 1.4120 0.5922 7 6 2.0069 -1.2130 0.0005 8 1 3.0818 -1.2159 -0.1043 9 6 1.2818 -2.4765 0.1432 10 8 0.0651 -2.4828 0.1457 11 7 1.9620 -3.6328 0.2718 12 6 1.2365 -4.8976 0.4140 13 1 0.2022 -4.6938 0.6912 14 6 1.8884 -5.7330 1.4854 15 6 1.1903 -6.0273 2.6416 16 6 1.7994 -6.7961 3.6213 17 6 3.0935 -7.2427 3.4002 18 6 3.7287 -6.9085 2.2194 19 7 3.1184 -6.1745 1.3095 20 6 1.2685 -5.6562 -0.9143 21 6 2.1726 -5.1071 -2.0198 22 6 0.6523 -4.9696 -2.1350 23 1 -0.4850 0.8401 -0.0004 24 1 2.9321 -3.6278 0.2701 25 1 0.1835 -5.6622 2.7804 26 1 1.2781 -7.0422 4.5346 27 1 3.5989 -7.8434 4.1419 28 1 4.7364 -7.2527 2.0394 29 1 1.1651 -6.7387 -0.8401 30 1 2.7442 -4.2051 -1.8009 31 1 2.6635 -5.8283 -2.6731 32 1 0.1439 -5.6006 -2.8639 33 1 0.2238 -3.9778 -1.9916 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928614463.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:20 Heat of formation + Delta-G solvation = 21.564561 kcal Electronic energy + Delta-G solvation = -17465.871632 eV Core-core repulsion = 14685.293778 eV Total energy + Delta-G solvation = -2780.577854 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.11489 -37.99996 -35.90108 -33.02661 -32.39710 -32.09309 -30.81540 -27.19969 -25.45452 -23.35763 -22.25893 -21.66630 -20.43726 -18.86855 -17.47389 -16.55797 -16.05663 -15.55287 -15.26754 -14.91818 -14.50286 -14.02242 -13.45173 -13.24815 -12.88191 -12.66954 -12.17701 -11.84692 -11.51917 -11.26372 -10.99953 -10.92216 -10.77642 -10.45065 -10.21232 -9.81136 -9.66961 -9.37552 -9.19316 -8.85175 -8.81208 -7.60524 -7.51001 -6.19527 -4.62927 1.28292 1.45974 3.14316 3.21952 3.25969 3.95603 4.13433 4.39843 4.49705 4.62532 4.88890 4.95477 5.08245 5.21285 5.31941 5.49330 5.60227 5.66865 5.75588 5.85721 5.97533 6.11368 6.16868 6.28784 6.31568 6.49076 6.55597 6.84587 6.89601 6.97130 7.44539 7.95741 8.09078 8.24790 8.36347 9.03390 9.54563 10.59343 10.77763 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.006695 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.289436 B = 4181.059449 C = 4667.275282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.579 6.579 11 N -0.749 5.749 12 C 0.227 3.773 13 H 0.104 0.896 14 C 0.139 3.861 15 C -0.161 4.161 16 C -0.078 4.078 17 C -0.186 4.186 18 C 0.095 3.905 19 N -0.468 5.468 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.176 4.176 23 H 0.268 0.732 24 H 0.386 0.614 25 H 0.135 0.865 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.151 0.849 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.109 -11.927 3.867 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.362 3.638 10 O -0.462 6.462 11 N -0.403 5.403 12 C 0.119 3.881 13 H 0.122 0.878 14 C 0.001 3.999 15 C -0.182 4.182 16 C -0.104 4.104 17 C -0.206 4.206 18 C -0.063 4.063 19 N -0.177 5.177 20 C -0.175 4.175 21 C -0.200 4.200 22 C -0.213 4.213 23 H 0.078 0.922 24 H 0.218 0.782 25 H 0.153 0.847 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.168 0.832 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.455 -11.580 3.093 12.787 hybrid contribution 0.561 0.440 0.935 1.175 sum 5.016 -11.141 4.027 12.864 Atomic orbital electron populations 1.70019 1.07020 1.27224 1.35283 1.25677 0.94573 1.00201 0.92586 0.86398 0.80339 0.81602 0.78684 1.19805 1.20435 1.18887 1.20866 0.94152 0.89541 1.53569 0.91475 1.18227 0.87161 0.82241 0.76178 1.90587 1.13960 1.86101 1.55577 1.46174 1.08875 1.04629 1.80594 1.18948 0.96856 0.83452 0.88825 0.87789 1.21761 0.90064 0.93765 0.94354 1.22076 1.01976 0.99549 0.94564 1.21532 0.94836 0.95430 0.98621 1.22060 0.96221 1.02873 0.99426 1.22746 0.99577 0.94166 0.89782 1.67528 1.09692 1.09157 1.31353 1.22544 1.06391 0.97703 0.90839 1.22820 0.93291 1.03033 1.00870 1.22971 0.95998 1.03039 0.99256 0.92154 0.78200 0.84707 0.85181 0.85345 0.83176 0.89015 0.87958 0.90304 0.90079 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.75 11.86 55.55 0.66 -22.09 16 2 C 0.09 2.48 5.49 -17.36 -0.10 2.39 16 3 Si 0.91 20.21 29.56 -169.99 -5.03 15.19 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -15.32 9.53 -35.63 -0.34 -15.66 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.56 15.49 7.41 -12.99 -0.10 15.39 16 10 O -0.58 -18.03 14.04 5.21 0.07 -17.95 16 11 N -0.75 -16.92 3.33 -56.35 -0.19 -17.10 16 12 C 0.23 4.50 2.90 -69.08 -0.20 4.30 16 13 H 0.10 2.29 6.80 -51.93 -0.35 1.94 16 14 C 0.14 2.41 5.71 -82.59 -0.47 1.94 16 15 C -0.16 -2.45 9.71 -39.44 -0.38 -2.83 16 16 C -0.08 -0.96 10.18 -39.28 -0.40 -1.36 16 17 C -0.19 -2.14 10.11 -39.44 -0.40 -2.54 16 18 C 0.09 1.24 11.18 -17.55 -0.20 1.05 16 19 N -0.47 -7.67 10.03 -9.48 -0.10 -7.77 16 20 C -0.15 -2.80 5.50 -90.62 -0.50 -3.29 16 21 C -0.16 -2.90 9.85 -26.69 -0.26 -3.17 16 22 C -0.18 -3.30 10.17 -26.69 -0.27 -3.57 16 23 H 0.27 7.22 8.29 -40.82 -0.34 6.89 16 24 H 0.39 8.30 8.42 -40.82 -0.34 7.96 16 25 H 0.14 1.95 7.95 -52.49 -0.42 1.53 16 26 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 30 H 0.10 2.01 6.74 -51.93 -0.35 1.66 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.11 2.45 7.38 -51.93 -0.38 2.07 16 LS Contribution 289.91 15.07 4.37 4.37 Total: -1.00 -32.87 289.91 -7.75 -40.62 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -3.93 Total: 12.10 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -3.61 Total: -7.36 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.38 Total: -46.96 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.07 Total: -17.95 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.87 -7.75 -40.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928614463.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.184 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds