Wall clock time and date at job start Sun Mar 29 2020 23:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34834 * 125.31197 * 2 1 4 4 O 1.21605 * 126.40594 * 359.97012 * 3 2 1 5 5 C 1.47367 * 107.19410 * 179.97438 * 3 2 1 6 6 C 1.39329 * 133.50988 * 180.02562 * 5 3 2 7 7 C 1.37891 * 119.71495 * 179.97438 * 6 5 3 8 8 C 1.38616 * 120.32233 * 359.97438 * 7 6 5 9 9 C 1.38028 * 120.55654 * 0.28458 * 8 7 6 10 10 C 1.38807 * 119.94314 * 359.46915 * 9 8 7 11 11 N 1.38615 * 133.04373 * 180.18856 * 10 9 8 12 12 C 1.46506 * 125.27665 * 0.30655 * 11 10 9 13 13 C 1.53004 * 109.46650 * 90.00090 * 12 11 10 14 14 C 1.50700 * 109.46955 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99679 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00060 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99995 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99906 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46949 * 90.00829 * 18 16 14 20 20 H 1.48505 * 109.47289 * 210.00350 * 18 16 14 21 21 H 1.48500 * 109.47498 * 330.00468 * 18 16 14 22 22 H 1.08991 * 109.46986 * 270.00368 * 1 2 3 23 23 H 1.09000 * 109.46950 * 30.00808 * 1 2 3 24 24 H 1.09000 * 109.46925 * 150.00522 * 1 2 3 25 25 H 1.08004 * 120.14134 * 0.02562 * 6 5 3 26 26 H 1.08007 * 119.84148 * 179.97438 * 7 6 5 27 27 H 1.07997 * 119.72223 * 180.02562 * 8 7 6 28 28 H 1.07995 * 120.02793 * 179.70383 * 9 8 7 29 29 H 1.08990 * 109.46943 * 209.99769 * 12 11 10 30 30 H 1.09001 * 109.47194 * 330.00341 * 12 11 10 31 31 H 1.09003 * 109.47357 * 299.99740 * 13 12 11 32 32 H 1.08997 * 109.47097 * 59.99709 * 13 12 11 33 33 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2444 1.1003 0.0000 4 8 1.8629 2.2549 -0.0005 5 6 3.6450 0.6420 0.0006 6 6 4.8709 1.3041 0.0014 7 6 6.0414 0.5752 0.0024 8 6 6.0030 -0.8105 0.0032 9 6 4.7953 -1.4789 -0.0029 10 6 3.6067 -0.7622 0.0012 11 7 2.2733 -1.1412 0.0005 12 6 1.7864 -2.5230 0.0010 13 6 1.6159 -3.0030 1.4437 14 6 1.1145 -4.4241 1.4443 15 1 0.9350 -4.9338 0.5092 16 6 0.8840 -5.0733 2.6386 17 7 0.4459 -6.3134 2.6391 18 14 1.1938 -4.1915 4.2559 19 1 -0.0443 -3.4917 4.6832 20 1 1.5858 -5.1807 5.2919 21 1 2.2861 -3.2013 4.0786 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8899 -0.5140 24 1 -0.3633 -0.8900 -0.5138 25 1 4.9043 2.3836 0.0020 26 1 6.9929 1.0863 0.0025 27 1 6.9256 -1.3717 0.0044 28 1 4.7754 -2.5587 -0.0070 29 1 0.8267 -2.5701 -0.5134 30 1 2.5055 -3.1617 -0.5119 31 1 2.5757 -2.9558 1.9583 32 1 0.8970 -2.3642 1.9566 33 1 0.2841 -6.7702 3.4793 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931246170.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:17 Heat of formation + Delta-G solvation = 50.615626 kcal Electronic energy + Delta-G solvation = -17468.699103 eV Core-core repulsion = 14689.380998 eV Total energy + Delta-G solvation = -2779.318105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.24384 -37.81583 -36.90480 -34.04592 -32.52218 -31.78963 -30.65319 -28.53281 -27.28336 -24.63276 -22.70757 -22.08370 -21.09901 -19.77787 -17.52011 -17.33333 -16.46562 -16.02424 -15.92699 -14.74610 -14.41882 -14.21568 -14.01623 -13.66668 -13.27972 -13.16183 -13.12170 -12.61735 -12.55083 -11.99040 -11.93984 -11.32530 -11.22310 -11.04636 -10.38359 -10.20768 -10.02133 -9.70241 -9.50033 -9.07025 -8.77765 -8.74518 -7.09189 -6.25374 -4.27434 1.09290 1.65241 1.79743 3.01255 3.18092 3.27096 3.31387 3.71580 3.99458 4.27814 4.62400 5.00435 5.05163 5.09599 5.19063 5.26396 5.35633 5.45681 5.59720 5.65509 5.72484 5.84997 5.92854 6.13548 6.23399 6.32864 6.51907 6.61817 6.87283 6.94183 6.99787 7.37174 7.56246 7.66555 8.24337 8.31704 8.74911 9.35363 10.86857 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.007102 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.746499 B = 3941.726611 C = 4529.729886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.408 5.408 3 C 0.551 3.449 4 O -0.543 6.543 5 C -0.247 4.247 6 C -0.006 4.006 7 C -0.190 4.190 8 C -0.047 4.047 9 C -0.167 4.167 10 C 0.218 3.782 11 N -0.403 5.403 12 C 0.147 3.853 13 C -0.028 4.028 14 C -0.530 4.530 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.894 5.894 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.265 1.265 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.025 0.975 32 H 0.016 0.984 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.260 10.269 -5.700 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.227 5.227 3 C 0.343 3.657 4 O -0.421 6.421 5 C -0.255 4.255 6 C -0.025 4.025 7 C -0.210 4.210 8 C -0.066 4.066 9 C -0.190 4.190 10 C 0.106 3.894 11 N -0.199 5.199 12 C 0.028 3.972 13 C -0.067 4.067 14 C -0.568 4.568 15 H 0.094 0.906 16 C -0.127 4.127 17 N -0.532 5.532 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.190 1.190 22 H 0.088 0.912 23 H 0.111 0.889 24 H 0.103 0.897 25 H 0.143 0.857 26 H 0.143 0.857 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.525 10.555 -5.593 13.611 hybrid contribution -0.122 0.072 1.058 1.067 sum 6.403 10.627 -4.535 13.209 Atomic orbital electron populations 1.21858 0.74265 1.04255 1.03494 1.47696 1.04342 0.98879 1.71741 1.17811 0.86030 0.83403 0.78430 1.90786 1.79830 1.16588 1.54900 1.20014 0.94352 0.93242 1.17939 1.20470 0.89706 0.99614 0.92728 1.20813 0.97564 0.93988 1.08683 1.20986 0.96715 0.94315 0.94634 1.20101 0.89002 1.00138 1.09710 1.18292 0.84080 0.93079 0.93922 1.46916 0.99021 0.99246 1.74714 1.22056 1.00489 0.73472 1.01201 1.20027 0.97687 0.97493 0.91446 1.20836 1.45596 0.95477 0.94898 0.90567 1.24933 0.94048 0.94633 0.99121 1.69888 1.44886 1.11117 1.27292 0.86820 0.79348 0.79842 0.83596 1.20185 1.21012 1.18970 0.91190 0.88898 0.89686 0.85663 0.85714 0.85283 0.85051 0.90031 0.88655 0.95653 0.96591 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.40 10.89 59.85 0.65 2.05 16 2 N -0.41 -7.03 3.98 -68.19 -0.27 -7.31 16 3 C 0.55 10.26 8.17 -12.52 -0.10 10.16 16 4 O -0.54 -11.13 17.82 5.27 0.09 -11.04 16 5 C -0.25 -4.18 6.35 -104.94 -0.67 -4.85 16 6 C -0.01 -0.08 10.09 -39.30 -0.40 -0.48 16 7 C -0.19 -2.24 10.03 -39.57 -0.40 -2.64 16 8 C -0.05 -0.55 10.02 -39.52 -0.40 -0.95 16 9 C -0.17 -2.38 9.96 -39.45 -0.39 -2.77 16 10 C 0.22 3.65 6.86 -83.74 -0.57 3.07 16 11 N -0.40 -7.04 3.69 -58.52 -0.22 -7.25 16 12 C 0.15 2.60 5.85 -4.04 -0.02 2.57 16 13 C -0.03 -0.62 4.37 -27.88 -0.12 -0.74 16 14 C -0.53 -13.79 9.66 -34.44 -0.33 -14.12 16 15 H 0.08 2.09 7.99 -52.48 -0.42 1.67 16 16 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 18 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 24 H 0.08 1.04 6.97 -51.93 -0.36 0.68 16 25 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 26 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 27 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.08 1.35 6.97 -51.93 -0.36 0.99 16 30 H 0.10 1.58 8.11 -51.93 -0.42 1.15 16 31 H 0.03 0.58 7.20 -51.93 -0.37 0.20 16 32 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 286.92 15.07 4.32 4.32 Total: -1.00 -31.78 286.92 -6.84 -38.62 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.03 Total: -1.62 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -2.85 Total: -6.72 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.29 Total: -39.85 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.78 -6.84 -38.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931246170.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.240 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds