Wall clock time and date at job start Sun Mar 29 2020 23:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34834 * 125.31197 * 2 1 4 4 O 1.21605 * 126.40594 * 359.97012 * 3 2 1 5 5 C 1.47367 * 107.19410 * 179.97438 * 3 2 1 6 6 C 1.39329 * 133.50988 * 180.02562 * 5 3 2 7 7 C 1.37891 * 119.71495 * 179.97438 * 6 5 3 8 8 C 1.38616 * 120.32233 * 359.97438 * 7 6 5 9 9 C 1.38028 * 120.55654 * 0.28458 * 8 7 6 10 10 C 1.38807 * 119.94314 * 359.46915 * 9 8 7 11 11 N 1.38615 * 133.04373 * 180.18856 * 10 9 8 12 12 C 1.46506 * 125.27665 * 0.30655 * 11 10 9 13 13 C 1.53004 * 109.46650 * 90.00090 * 12 11 10 14 14 C 1.50700 * 109.46955 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99679 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00060 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99995 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99906 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46949 * 90.00829 * 18 16 14 20 20 H 1.48505 * 109.47289 * 210.00350 * 18 16 14 21 21 H 1.48500 * 109.47498 * 330.00468 * 18 16 14 22 22 H 1.08991 * 109.46986 * 270.00368 * 1 2 3 23 23 H 1.09000 * 109.46950 * 30.00808 * 1 2 3 24 24 H 1.09000 * 109.46925 * 150.00522 * 1 2 3 25 25 H 1.08004 * 120.14134 * 0.02562 * 6 5 3 26 26 H 1.08007 * 119.84148 * 179.97438 * 7 6 5 27 27 H 1.07997 * 119.72223 * 180.02562 * 8 7 6 28 28 H 1.07995 * 120.02793 * 179.70383 * 9 8 7 29 29 H 1.08990 * 109.46943 * 209.99769 * 12 11 10 30 30 H 1.09001 * 109.47194 * 330.00341 * 12 11 10 31 31 H 1.09003 * 109.47357 * 299.99740 * 13 12 11 32 32 H 1.08997 * 109.47097 * 59.99709 * 13 12 11 33 33 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2444 1.1003 0.0000 4 8 1.8629 2.2549 -0.0005 5 6 3.6450 0.6420 0.0006 6 6 4.8709 1.3041 0.0014 7 6 6.0414 0.5752 0.0024 8 6 6.0030 -0.8105 0.0032 9 6 4.7953 -1.4789 -0.0029 10 6 3.6067 -0.7622 0.0012 11 7 2.2733 -1.1412 0.0005 12 6 1.7864 -2.5230 0.0010 13 6 1.6159 -3.0030 1.4437 14 6 1.1145 -4.4241 1.4443 15 1 0.9350 -4.9338 0.5092 16 6 0.8840 -5.0733 2.6386 17 7 0.4459 -6.3134 2.6391 18 14 1.1938 -4.1915 4.2559 19 1 -0.0443 -3.4917 4.6832 20 1 1.5858 -5.1807 5.2919 21 1 2.2861 -3.2013 4.0786 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8899 -0.5140 24 1 -0.3633 -0.8900 -0.5138 25 1 4.9043 2.3836 0.0020 26 1 6.9929 1.0863 0.0025 27 1 6.9256 -1.3717 0.0044 28 1 4.7754 -2.5587 -0.0070 29 1 0.8267 -2.5701 -0.5134 30 1 2.5055 -3.1617 -0.5119 31 1 2.5757 -2.9558 1.9583 32 1 0.8970 -2.3642 1.9566 33 1 0.2841 -6.7702 3.4793 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931246170.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:17 Heat of formation + Delta-G solvation = 30.988533 kcal Electronic energy + Delta-G solvation = -17469.550197 eV Core-core repulsion = 14689.380998 eV Total energy + Delta-G solvation = -2780.169199 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.48395 -39.03421 -38.19624 -35.79969 -34.09672 -33.16881 -31.85503 -30.00577 -28.47465 -26.24006 -23.81157 -23.40447 -22.67812 -21.06166 -19.20394 -18.59208 -17.97770 -17.27418 -17.15097 -16.38528 -16.04100 -15.48567 -15.18119 -14.90623 -14.82519 -14.56765 -14.38373 -14.25688 -13.72199 -13.43480 -13.01670 -12.95112 -12.79964 -12.14320 -12.11359 -11.85502 -11.74069 -11.52283 -11.03752 -10.83913 -10.23858 -9.87709 -8.37461 -8.33942 -6.40785 -0.03444 0.52228 0.60024 1.29041 1.33496 1.42451 1.72682 2.28429 2.51046 2.89812 2.99869 3.41493 3.84804 3.94308 4.12108 4.23516 4.26320 4.36253 4.37873 4.47295 4.54996 4.61101 4.67161 4.90921 5.10415 5.11504 5.20284 5.26053 5.48617 5.52268 5.60592 5.91811 6.13042 6.25151 6.36744 6.66951 6.98086 7.25044 8.79388 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.007102 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.746499 B = 3941.726611 C = 4529.729886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.411 5.411 3 C 0.537 3.463 4 O -0.576 6.576 5 C -0.271 4.271 6 C -0.018 4.018 7 C -0.173 4.173 8 C -0.035 4.035 9 C -0.178 4.178 10 C 0.194 3.806 11 N -0.412 5.412 12 C 0.159 3.841 13 C -0.020 4.020 14 C -0.526 4.526 15 H 0.053 0.947 16 C 0.021 3.979 17 N -0.939 5.939 18 Si 0.936 3.064 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.258 1.258 22 H 0.070 0.930 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.136 0.864 26 H 0.163 0.837 27 H 0.169 0.831 28 H 0.138 0.862 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.019 0.981 32 H 0.010 0.990 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.400 11.112 -5.613 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.229 5.229 3 C 0.330 3.670 4 O -0.458 6.458 5 C -0.279 4.279 6 C -0.037 4.037 7 C -0.192 4.192 8 C -0.054 4.054 9 C -0.201 4.201 10 C 0.084 3.916 11 N -0.210 5.210 12 C 0.040 3.960 13 C -0.059 4.059 14 C -0.565 4.565 15 H 0.071 0.929 16 C -0.178 4.178 17 N -0.579 5.579 18 Si 0.761 3.239 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.182 1.182 22 H 0.089 0.911 23 H 0.124 0.876 24 H 0.118 0.882 25 H 0.154 0.846 26 H 0.181 0.819 27 H 0.186 0.814 28 H 0.156 0.844 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.682 11.397 -5.517 15.352 hybrid contribution -0.685 -0.196 0.964 1.199 sum 7.997 11.201 -4.552 14.496 Atomic orbital electron populations 1.22098 0.72875 1.05633 1.03966 1.47892 1.05269 0.98737 1.70963 1.18164 0.87144 0.83266 0.78447 1.90742 1.80572 1.17651 1.56809 1.20224 0.94465 0.93671 1.19573 1.20797 0.89545 1.00530 0.92856 1.21288 0.98191 0.94081 1.05677 1.21496 0.97208 0.94676 0.92018 1.20426 0.89076 1.00678 1.09888 1.18661 0.84307 0.93378 0.95216 1.46795 0.99522 0.98858 1.75783 1.21773 1.01610 0.74127 0.98493 1.19876 0.96696 0.94959 0.94323 1.21133 1.44287 0.97209 0.93834 0.92917 1.25721 0.94239 0.95228 1.02588 1.70009 1.46911 1.12776 1.28197 0.85880 0.79444 0.78845 0.79778 1.19737 1.20650 1.18214 0.91140 0.87623 0.88250 0.84609 0.81900 0.81392 0.84422 0.89054 0.87416 0.96241 0.97118 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.54 10.89 127.77 1.39 3.93 16 2 N -0.41 -14.07 3.98 -487.87 -1.94 -16.01 16 3 C 0.54 20.06 8.17 86.64 0.71 20.77 16 4 O -0.58 -24.02 17.82 -4.05 -0.07 -24.09 16 5 C -0.27 -8.96 6.35 -20.07 -0.13 -9.09 16 6 C -0.02 -0.46 10.09 22.45 0.23 -0.24 16 7 C -0.17 -3.34 10.03 22.28 0.22 -3.12 16 8 C -0.03 -0.67 10.02 22.31 0.22 -0.45 16 9 C -0.18 -4.63 9.96 22.36 0.22 -4.41 16 10 C 0.19 6.24 6.86 38.75 0.27 6.51 16 11 N -0.41 -14.07 3.69 -339.05 -1.25 -15.32 16 12 C 0.16 5.50 5.85 86.38 0.51 6.00 16 13 C -0.02 -0.86 4.37 29.85 0.13 -0.73 16 14 C -0.53 -27.43 9.66 25.60 0.25 -27.18 16 15 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 16 C 0.02 1.15 5.47 84.65 0.46 1.62 16 17 N -0.94 -55.41 13.96 21.45 0.30 -55.11 16 18 Si 0.94 42.91 27.47 68.60 1.88 44.79 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.26 -11.42 6.54 99.48 0.65 -10.77 16 22 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.11 2.55 8.05 -2.39 -0.02 2.53 16 24 H 0.10 2.35 6.97 -2.39 -0.02 2.33 16 25 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 26 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 27 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 28 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 29 H 0.09 2.94 6.97 -2.39 -0.02 2.93 16 30 H 0.11 3.43 8.11 -2.39 -0.02 3.41 16 31 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 32 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 33 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -69.10 286.92 4.45 -64.65 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.05 Total: 7.46 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 4.48 Total: -6.38 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -2.89 Total: -86.43 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.07 Total: -24.09 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.79 kcal Total: -69.10 4.45 -64.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931246170.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.636 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds