Wall clock time and date at job start Sun Mar 29 2020 22:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99966 * 2 1 4 4 H 1.48498 * 109.46921 * 271.43816 * 3 2 1 5 5 H 1.48504 * 109.47123 * 31.43463 * 3 2 1 6 6 H 1.48493 * 109.47387 * 151.43818 * 3 2 1 7 7 C 1.38809 * 120.00026 * 179.72359 * 2 1 3 8 8 H 1.08003 * 120.00259 * 29.50652 * 7 2 1 9 9 N 1.36935 * 119.99937 * 209.50908 * 7 2 1 10 10 C 1.47048 * 121.35647 * 42.70744 * 9 7 2 11 11 C 1.50440 * 108.89513 * 222.71681 * 10 9 7 12 12 O 1.21279 * 118.49027 * 167.31284 * 11 10 9 13 13 N 1.33380 * 123.02054 * 347.29315 * 11 10 9 14 14 C 1.45651 * 124.59051 * 4.31661 * 13 11 10 15 15 C 1.47275 * 121.35435 * 222.42772 * 9 7 2 16 16 H 1.08995 * 109.72354 * 238.19242 * 15 9 7 17 17 C 1.50705 * 109.71572 * 358.84277 * 15 9 7 18 18 C 1.38234 * 119.99663 * 52.97399 * 17 15 9 19 19 C 1.38238 * 119.99620 * 179.80563 * 18 17 15 20 20 C 1.38240 * 119.99873 * 0.40137 * 19 18 17 21 21 C 1.38228 * 119.99757 * 359.85006 * 20 19 18 22 22 C 1.38228 * 120.00581 * 359.96099 * 21 20 19 23 23 H 0.97000 * 119.99837 * 0.27449 * 1 2 3 24 24 H 1.09003 * 109.56837 * 342.54492 * 10 9 7 25 25 H 1.09002 * 109.56579 * 102.77886 * 10 9 7 26 26 H 0.96999 * 117.70592 * 184.29486 * 13 11 10 27 27 H 1.09011 * 109.21470 * 98.43180 * 14 13 11 28 28 H 1.08997 * 109.21960 * 217.80674 * 14 13 11 29 29 H 1.07997 * 120.00639 * 359.97438 * 18 17 15 30 30 H 1.08004 * 120.00211 * 180.22686 * 19 18 17 31 31 H 1.08005 * 119.99590 * 179.83471 * 20 19 18 32 32 H 1.08010 * 119.99988 * 179.97438 * 21 20 19 33 33 H 1.07997 * 120.00261 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4672 2.0640 -1.3996 5 1 1.4631 2.6438 0.7302 6 1 3.5626 1.4317 0.6693 7 6 2.0102 -1.2021 0.0058 8 1 1.5753 -2.0790 -0.4506 9 7 3.2463 -1.2762 0.5903 10 6 3.5219 -0.6299 1.8820 11 6 4.8651 0.0441 1.8129 12 8 5.1675 0.8231 2.6918 13 7 5.7390 -0.1760 0.8295 14 6 5.4802 -1.0118 -0.3349 15 6 4.3522 -2.0115 -0.0463 16 1 4.7111 -2.7906 0.6261 17 6 3.8756 -2.6309 -1.3349 18 6 3.2534 -1.8481 -2.2893 19 6 2.8198 -2.4155 -3.4730 20 6 3.0011 -3.7672 -3.6987 21 6 3.6186 -4.5509 -2.7420 22 6 4.0557 -3.9829 -1.5600 23 1 -0.4850 0.8400 -0.0040 24 1 2.7513 0.1123 2.0907 25 1 3.5287 -1.3810 2.6719 26 1 6.6076 0.2509 0.8942 27 1 5.1949 -0.3784 -1.1750 28 1 6.3864 -1.5607 -0.5911 29 1 3.1084 -0.7928 -2.1115 30 1 2.3370 -1.8032 -4.2203 31 1 2.6599 -4.2110 -4.6224 32 1 3.7598 -5.6071 -2.9181 33 1 4.5385 -4.5951 -0.8128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933327722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:16 Heat of formation + Delta-G solvation = 23.807595 kcal Electronic energy + Delta-G solvation = -18276.637674 eV Core-core repulsion = 15496.157086 eV Total energy + Delta-G solvation = -2780.480588 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83083 -38.59822 -36.14379 -33.97037 -32.01952 -31.15835 -30.34774 -27.83508 -26.75856 -24.02960 -22.32389 -22.00586 -20.65680 -18.52943 -17.52278 -16.54236 -16.19069 -15.86571 -15.28901 -14.80585 -14.35205 -14.28274 -13.68958 -13.29787 -13.00617 -12.83564 -12.48646 -12.20518 -12.15506 -11.86723 -11.45889 -11.10287 -10.82395 -10.46946 -10.38281 -10.27078 -9.69151 -9.49842 -8.73152 -8.54731 -8.32513 -8.16336 -6.91428 -6.20918 -3.61721 1.86517 2.00332 3.08827 3.30274 3.41871 3.56346 3.80632 4.29886 4.41408 4.75511 5.01505 5.19064 5.37469 5.39215 5.44233 5.57712 5.68093 5.74442 5.85592 6.07565 6.12169 6.25261 6.36817 6.42049 6.50770 6.67041 6.95365 7.09804 7.17802 7.28223 7.56204 7.76441 7.83965 8.23127 8.64668 8.81606 9.48856 9.93278 10.92118 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.011293 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.240278 B = 2478.827468 C = 3275.335324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.053 3.947 3 Si 0.844 3.156 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.255 1.255 7 C -0.269 4.269 8 H 0.084 0.916 9 N -0.598 5.598 10 C 0.134 3.866 11 C 0.517 3.483 12 O -0.578 6.578 13 N -0.718 5.718 14 C 0.098 3.902 15 C 0.190 3.810 16 H 0.056 0.944 17 C -0.065 4.065 18 C -0.052 4.052 19 C -0.136 4.136 20 C -0.123 4.123 21 C -0.140 4.140 22 C -0.111 4.111 23 H 0.267 0.733 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.387 0.613 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.131 -6.029 -5.263 12.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.151 4.151 3 Si 0.671 3.329 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.180 1.180 7 C -0.397 4.397 8 H 0.102 0.898 9 N -0.324 5.324 10 C 0.006 3.994 11 C 0.305 3.695 12 O -0.458 6.458 13 N -0.369 5.369 14 C -0.028 4.028 15 C 0.084 3.916 16 H 0.074 0.926 17 C -0.066 4.066 18 C -0.070 4.070 19 C -0.154 4.154 20 C -0.141 4.141 21 C -0.158 4.158 22 C -0.130 4.130 23 H 0.077 0.923 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.220 0.780 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.826 -5.647 -4.811 11.530 hybrid contribution 0.591 1.251 -0.190 1.396 sum 9.417 -4.396 -5.001 11.533 Atomic orbital electron populations 1.69965 1.06248 1.27250 1.47695 1.25606 0.94865 0.97630 0.97046 0.87450 0.81825 0.85500 0.78101 1.21347 1.21876 1.17966 1.18546 0.89830 0.95129 1.36145 0.89830 1.44472 1.08507 1.62023 1.17395 1.21350 0.91608 0.96714 0.89705 1.21075 0.87516 0.80819 0.80065 1.90667 1.78513 1.37133 1.39466 1.45329 1.17524 1.50895 1.23117 1.22088 0.99327 0.93766 0.87635 1.20000 0.87948 0.92412 0.91238 0.92621 1.19452 0.99293 0.93206 0.94673 1.21104 0.93452 1.01185 0.91294 1.21093 1.01354 0.95084 0.97856 1.21000 0.99915 0.94214 0.98960 1.20876 1.01196 0.99044 0.94721 1.20906 1.00687 0.94263 0.97151 0.92339 0.88574 0.91903 0.77950 0.91943 0.91409 0.85298 0.86826 0.87136 0.87026 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.98 13.97 55.49 0.78 -24.20 16 2 C 0.05 1.40 5.05 -17.43 -0.09 1.31 16 3 Si 0.84 20.66 26.61 -169.99 -4.52 16.13 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.25 -6.12 3.99 56.52 0.23 -5.89 16 7 C -0.27 -6.75 6.69 -15.06 -0.10 -6.86 16 8 H 0.08 2.33 7.09 -52.48 -0.37 1.95 16 9 N -0.60 -12.95 2.43 -167.18 -0.41 -13.36 16 10 C 0.13 2.87 5.49 -5.02 -0.03 2.85 16 11 C 0.52 10.78 5.66 -11.73 -0.07 10.72 16 12 O -0.58 -13.59 17.80 5.56 0.10 -13.49 16 13 N -0.72 -12.42 5.42 -61.06 -0.33 -12.76 16 14 C 0.10 1.55 6.68 -4.26 -0.03 1.52 16 15 C 0.19 3.38 3.18 -68.42 -0.22 3.16 16 16 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16 17 C -0.07 -1.14 4.11 -104.62 -0.43 -1.57 16 18 C -0.05 -0.96 6.94 -39.58 -0.27 -1.24 16 19 C -0.14 -2.24 10.05 -39.58 -0.40 -2.64 16 20 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 21 C -0.14 -2.00 10.05 -39.59 -0.40 -2.40 16 22 C -0.11 -1.71 9.67 -39.59 -0.38 -2.09 16 23 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.10 2.26 5.52 -51.93 -0.29 1.97 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.39 5.82 8.80 -40.82 -0.36 5.46 16 27 H 0.06 1.03 7.42 -51.92 -0.39 0.65 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.13 2.66 6.97 -52.49 -0.37 2.30 16 30 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 31 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 32 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.11 1.50 7.96 -52.49 -0.42 1.08 16 LS Contribution 268.48 15.07 4.05 4.05 Total: -1.00 -30.30 268.48 -7.17 -37.48 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.02 Total: 5.61 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.81 Total: 0.55 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.04 Total: -50.32 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.10 Total: -13.49 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.52 Total: 16.13 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.30 -7.17 -37.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933327722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.283 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds