Wall clock time and date at job start Sun Mar 29 2020 22:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46804 * 147.23676 * 3 2 1 5 5 C 1.36865 * 120.00037 * 96.52713 * 4 3 2 6 6 H 1.07999 * 120.00381 * 157.39215 * 5 4 3 7 7 C 1.39016 * 120.00285 * 337.38633 * 5 4 3 8 8 N 1.31402 * 119.99623 * 355.08270 * 7 5 4 9 9 Si 1.86797 * 120.00476 * 175.07479 * 7 5 4 10 10 H 1.48504 * 109.46816 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46684 * 120.00199 * 9 7 5 12 12 H 1.48500 * 109.47194 * 240.00417 * 9 7 5 13 13 C 1.34782 * 119.99662 * 276.52406 * 4 3 2 14 14 O 1.21735 * 120.00448 * 4.12234 * 13 4 3 15 15 C 1.46554 * 119.99502 * 184.11709 * 13 4 3 16 16 N 1.37669 * 126.24084 * 260.64165 * 15 13 4 17 17 H 0.96997 * 125.68729 * 0.04368 * 16 15 13 18 18 C 1.35588 * 108.63467 * 180.02562 * 16 15 13 19 19 C 1.50694 * 125.55926 * 179.97438 * 18 16 15 20 20 C 1.35489 * 108.87917 * 0.02562 * 18 16 15 21 21 C 1.37997 * 126.23681 * 80.96007 * 15 13 4 22 22 C 1.50698 * 126.46023 * 359.96778 * 21 15 13 23 23 H 4.40641 * 5.51321 * 179.97438 * 4 1 2 24 24 H 1.08999 * 109.46923 * 27.24141 * 3 2 1 25 25 H 1.08992 * 109.47165 * 267.23604 * 3 2 1 26 26 H 0.96995 * 119.99909 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.47416 * 270.02010 * 19 18 16 28 28 H 1.09001 * 109.47047 * 30.02090 * 19 18 16 29 29 H 1.09005 * 109.47109 * 150.02113 * 19 18 16 30 30 H 1.08000 * 126.05334 * 179.97438 * 20 18 16 31 31 H 1.09003 * 109.47290 * 270.20325 * 22 21 15 32 32 H 1.09000 * 109.47407 * 30.20406 * 22 21 15 33 33 H 1.09004 * 109.47063 * 150.20326 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1624 -0.7475 5 6 3.4884 2.3046 -0.0821 6 1 4.1679 3.0078 -0.5405 7 6 2.9738 2.5599 1.1838 8 7 2.0735 1.7548 1.7016 9 14 3.5622 4.0470 2.1490 10 1 4.5708 4.7882 1.3499 11 1 2.4093 4.9370 2.4384 12 1 4.1740 3.5982 3.4256 13 6 3.2333 1.1063 -2.0905 14 8 2.8479 0.1186 -2.6887 15 6 3.8055 2.2344 -2.8305 16 7 3.1011 3.2169 -3.4891 17 1 2.1347 3.2813 -3.5423 18 6 3.9832 4.0800 -4.0507 19 6 3.6224 5.2977 -4.8619 20 6 5.2419 3.6683 -3.7647 21 6 5.1487 2.5021 -2.9994 22 6 6.2983 1.6917 -2.4583 23 1 -1.0502 -0.0005 0.0001 24 1 3.0097 -0.9129 -0.4704 25 1 3.0093 0.0504 1.0264 26 1 1.7147 1.9326 2.5850 27 1 3.5451 5.0236 -5.9139 28 1 2.6666 5.6930 -4.5182 29 1 4.3947 6.0572 -4.7401 30 1 6.1554 4.1531 -4.0761 31 1 6.5682 2.0598 -1.4685 32 1 6.0037 0.6446 -2.3887 33 1 7.1545 1.7846 -3.1265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116915875.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:35 Heat of formation + Delta-G solvation = 69.314160 kcal Electronic energy + Delta-G solvation = -17799.387435 eV Core-core repulsion = 15020.880160 eV Total energy + Delta-G solvation = -2778.507276 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64992 -38.21461 -35.09375 -32.34464 -31.90621 -31.37407 -30.83605 -27.37512 -26.87176 -25.50838 -24.05314 -20.33700 -19.84015 -18.70677 -17.90829 -17.21025 -16.09372 -15.32815 -14.52119 -14.20701 -14.04837 -13.92278 -13.14958 -12.90671 -12.65049 -12.50268 -12.38490 -12.04602 -11.97614 -11.73805 -11.49935 -11.34749 -11.14735 -10.83535 -10.64474 -10.43477 -9.49849 -9.35756 -8.73475 -8.67218 -8.11451 -7.95780 -7.15535 -6.38306 -4.04037 2.67839 3.03080 3.17827 3.22307 3.32756 3.42117 3.92190 4.10421 4.11402 4.27551 4.98812 5.05899 5.28638 5.44823 5.66373 5.72314 5.78156 5.93866 6.03430 6.09567 6.27443 6.36640 6.60409 6.64890 6.68213 6.94621 6.98830 7.17435 7.39276 7.55768 7.62941 7.69318 8.10476 8.32198 8.94676 8.97602 9.33271 9.73224 10.59235 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017979 B = 0.009785 C = 0.007955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.013909 B = 2860.849620 C = 3519.137771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.091 4.091 3 C 0.238 3.762 4 N -0.419 5.419 5 C -0.330 4.330 6 H 0.105 0.895 7 C 0.035 3.965 8 N -0.865 5.865 9 Si 0.924 3.076 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.279 1.279 13 C 0.520 3.480 14 O -0.594 6.594 15 C 0.034 3.966 16 N -0.527 5.527 17 H 0.412 0.588 18 C 0.003 3.997 19 C -0.078 4.078 20 C -0.196 4.196 21 C -0.142 4.142 22 C -0.074 4.074 23 H 0.197 0.803 24 H 0.062 0.938 25 H 0.121 0.879 26 H 0.270 0.730 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.130 0.870 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 4.738 -4.916 7.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.093 4.093 3 C 0.116 3.884 4 N -0.136 5.136 5 C -0.457 4.457 6 H 0.123 0.877 7 C -0.170 4.170 8 N -0.503 5.503 9 Si 0.751 3.249 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.205 1.205 13 C 0.307 3.693 14 O -0.480 6.480 15 C -0.082 4.082 16 N -0.121 5.121 17 H 0.248 0.752 18 C -0.111 4.111 19 C -0.136 4.136 20 C -0.221 4.221 21 C -0.149 4.149 22 C -0.132 4.132 23 H 0.214 0.786 24 H 0.080 0.920 25 H 0.139 0.861 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.148 0.852 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.015 4.238 -4.982 7.203 hybrid contribution -0.605 0.995 0.710 1.364 sum 2.410 5.233 -4.272 7.172 Atomic orbital electron populations 1.24190 0.95336 1.04498 1.06007 1.23130 0.94301 0.96361 0.95504 1.18287 0.84252 0.87224 0.98608 1.43600 1.53892 1.12645 1.03461 1.19809 1.26992 0.98786 1.00153 0.87699 1.25385 0.95096 0.98632 0.97840 1.69996 1.26169 1.36708 1.17404 0.85882 0.78647 0.80912 0.79470 1.19074 1.20805 1.20462 1.17032 0.83608 0.86462 0.82214 1.90707 1.53949 1.34520 1.68805 1.20072 0.91295 0.93917 1.02928 1.41702 1.08431 1.20718 1.41296 0.75176 1.20175 0.89716 0.96102 1.05107 1.20235 1.01887 0.93401 0.98072 1.20280 0.95412 0.99346 1.07043 1.19610 0.92084 0.98472 1.04690 1.20064 0.94588 0.98540 0.99975 0.78564 0.91967 0.86121 0.91927 0.91673 0.92207 0.90546 0.85206 0.91778 0.92495 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.46 19.25 29.55 0.57 -5.89 16 2 C -0.09 -2.28 11.55 -37.12 -0.43 -2.71 16 3 C 0.24 5.85 5.03 -6.83 -0.03 5.82 16 4 N -0.42 -10.63 2.60 -119.47 -0.31 -10.94 16 5 C -0.33 -8.32 9.14 -15.02 -0.14 -8.45 16 6 H 0.11 2.65 6.52 -52.49 -0.34 2.31 16 7 C 0.04 0.87 5.22 -17.45 -0.09 0.78 16 8 N -0.86 -22.09 8.88 55.50 0.49 -21.60 16 9 Si 0.92 19.57 29.56 -169.99 -5.02 14.54 16 10 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.52 13.11 7.05 -12.91 -0.09 13.02 16 14 O -0.59 -16.43 16.82 5.16 0.09 -16.34 16 15 C 0.03 0.75 5.26 -81.98 -0.43 0.32 16 16 N -0.53 -10.08 6.10 -5.68 -0.03 -10.12 16 17 H 0.41 7.16 8.96 -40.82 -0.37 6.79 16 18 C 0.00 0.06 7.13 -81.92 -0.58 -0.53 16 19 C -0.08 -0.93 10.41 36.00 0.37 -0.55 16 20 C -0.20 -3.44 10.65 -39.98 -0.43 -3.87 16 21 C -0.14 -2.85 5.80 -104.13 -0.60 -3.46 16 22 C -0.07 -1.33 10.20 36.00 0.37 -0.96 16 23 H 0.20 3.68 7.80 -54.08 -0.42 3.26 16 24 H 0.06 1.46 7.69 -51.93 -0.40 1.06 16 25 H 0.12 2.98 6.23 -51.93 -0.32 2.66 16 26 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.07 7.96 -51.93 -0.41 0.66 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 294.21 15.07 4.43 4.43 Total: -1.00 -30.51 294.21 -5.81 -36.32 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -3.94 Total: 10.18 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.52 Total: -6.48 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.15 Total: -42.65 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.09 Total: -16.34 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.51 -5.81 -36.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116915875.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.639 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds