Wall clock time and date at job start Sun Mar 29 2020 22:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47221 * 2 1 4 4 H 1.09000 * 109.46645 * 55.00205 * 3 2 1 5 5 F 1.39898 * 109.47062 * 295.00543 * 3 2 1 6 6 C 1.50693 * 109.47097 * 174.99914 * 3 2 1 7 7 O 1.20833 * 120.00203 * 45.79667 * 6 3 2 8 8 O 1.34233 * 120.00402 * 225.79387 * 6 3 2 9 9 C 1.45200 * 117.00386 * 185.13302 * 8 6 3 10 10 C 1.52997 * 109.47019 * 175.05783 * 9 8 6 11 11 C 1.50701 * 113.00280 * 53.61909 * 10 9 8 12 12 H 1.07996 * 120.00078 * 264.43439 * 11 10 9 13 13 C 1.37874 * 119.99517 * 84.43586 * 11 10 9 14 14 N 1.31523 * 119.99514 * 176.55548 * 13 11 10 15 15 Si 1.86794 * 120.00420 * 356.54616 * 13 11 10 16 16 H 1.48499 * 109.46986 * 93.07770 * 15 13 11 17 17 H 1.48500 * 109.47233 * 213.07777 * 15 13 11 18 18 H 1.48495 * 109.47385 * 333.08104 * 15 13 11 19 19 C 1.54037 * 113.81211 * 281.63451 * 10 9 8 20 20 O 1.44184 * 85.51732 * 223.19917 * 19 10 9 21 21 C 1.44176 * 93.33955 * 24.19115 * 20 19 10 22 22 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47091 * 299.99461 * 1 2 3 24 24 H 1.08990 * 109.47118 * 59.99606 * 1 2 3 25 25 H 1.09003 * 109.47091 * 240.00539 * 2 1 3 26 26 H 1.09001 * 109.47523 * 120.00568 * 2 1 3 27 27 H 1.09003 * 109.46822 * 295.05116 * 9 8 6 28 28 H 1.09000 * 109.47092 * 55.05018 * 9 8 6 29 29 H 0.97001 * 119.99560 * 179.97438 * 14 13 11 30 30 H 1.08999 * 113.86879 * 337.34524 * 19 10 9 31 31 H 1.09001 * 113.86656 * 109.05458 * 19 10 9 32 32 H 1.09000 * 113.86920 * 221.66287 * 21 20 19 33 33 H 1.09008 * 113.98275 * 89.97084 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 9 1.6698 2.0680 -1.1953 6 6 3.5419 1.4443 0.1238 7 8 4.2048 0.6940 -0.5526 8 8 4.1433 2.2795 0.9856 9 6 5.5950 2.3091 0.9706 10 6 6.0926 3.3983 1.9229 11 6 5.5301 3.2657 3.3147 12 1 4.6547 3.8306 3.5993 13 6 6.1330 2.4234 4.2245 14 7 5.6834 2.3586 5.4588 15 14 7.5881 1.3740 3.7042 16 1 8.8511 2.0939 4.0075 17 1 7.5612 0.0878 4.4459 18 1 7.5090 1.1063 2.2458 19 6 5.9970 4.8222 1.3434 20 8 7.3122 5.0159 1.9017 21 6 7.6183 3.6071 1.8860 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 5.9814 1.3417 1.2915 28 1 5.9436 2.5226 -0.0398 29 1 6.1073 1.7657 6.0989 30 1 5.9712 4.8543 0.2542 31 1 5.2258 5.4366 1.8081 32 1 8.1330 3.2576 2.7810 33 1 8.0880 3.2660 0.9633 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123060504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:05 Heat of formation + Delta-G solvation = -142.827822 kcal Electronic energy + Delta-G solvation = -18571.294688 eV Core-core repulsion = 15320.526270 eV Total energy + Delta-G solvation = -3250.768418 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.95799 -40.21014 -39.42417 -36.15287 -34.11260 -32.90435 -30.80105 -28.20230 -26.03963 -25.36395 -24.38261 -22.40895 -20.53603 -19.19910 -17.87671 -17.04785 -16.65722 -16.23710 -16.07835 -15.66042 -15.06270 -14.85117 -14.65514 -14.01765 -13.78804 -13.19651 -13.01292 -12.94865 -12.65995 -12.25079 -12.11280 -11.87251 -11.25574 -11.13332 -11.00365 -10.63135 -10.46772 -10.39322 -10.26831 -9.87957 -9.61482 -9.26673 -8.78134 -8.65075 -6.26686 -4.27009 2.26346 2.80932 3.08510 3.14555 3.23056 4.18879 4.31630 4.49353 4.65147 4.71477 4.80811 5.06494 5.18604 5.31571 5.37386 5.51321 5.63748 5.77443 5.80521 5.90972 5.93071 5.93267 6.05385 6.08444 6.25316 6.54996 6.79959 6.90740 6.94443 7.46724 7.97737 8.31063 8.77611 9.32016 10.85689 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.007344 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.254199 B = 3811.577432 C = 4251.335425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.119 0.881 5 F -0.188 7.188 6 C 0.432 3.568 7 O -0.504 6.504 8 O -0.316 6.316 9 C 0.068 3.932 10 C -0.006 4.006 11 C -0.486 4.486 12 H 0.087 0.913 13 C 0.076 3.924 14 N -0.886 5.886 15 Si 0.869 3.131 16 H -0.273 1.273 17 H -0.289 1.289 18 H -0.259 1.259 19 C 0.041 3.959 20 O -0.369 6.369 21 C 0.024 3.976 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.267 0.733 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.320 -3.210 -9.524 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C 0.071 3.929 4 H 0.137 0.863 5 F -0.169 7.169 6 C 0.273 3.727 7 O -0.393 6.393 8 O -0.230 6.230 9 C -0.005 4.005 10 C -0.008 4.008 11 C -0.523 4.523 12 H 0.105 0.895 13 C -0.127 4.127 14 N -0.522 5.522 15 Si 0.699 3.301 16 H -0.200 1.200 17 H -0.216 1.216 18 H -0.184 1.184 19 C -0.036 4.036 20 O -0.288 6.288 21 C -0.053 4.053 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.929 -3.255 -9.430 11.605 hybrid contribution 0.932 -0.856 -0.336 1.310 sum -4.997 -4.111 -9.766 11.715 Atomic orbital electron populations 1.21759 0.93763 1.02644 1.02733 1.22047 0.97613 0.93205 1.05239 1.21217 0.88844 0.96660 0.86177 0.86314 1.92875 1.91627 1.84068 1.48300 1.24028 0.92025 0.78780 0.77898 1.90634 1.66687 1.38881 1.43069 1.86612 1.24923 1.57078 1.54357 1.23950 0.74812 1.02602 0.99182 1.21677 0.91546 0.90373 0.97167 1.20333 1.14171 1.26560 0.91260 0.89462 1.24965 0.96867 0.96193 0.94685 1.69853 1.41377 1.37774 1.03226 0.87254 0.83419 0.80049 0.79421 1.20024 1.21603 1.18412 1.23992 0.85963 0.97588 0.96077 1.89576 1.32048 1.23875 1.83291 1.24267 0.97870 0.82998 1.00190 0.91667 0.91902 0.91943 0.89544 0.89278 0.91088 0.93091 0.92237 0.92286 0.89281 0.89758 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.83 37.16 0.37 -1.00 16 2 C -0.14 -1.65 5.42 -26.73 -0.14 -1.79 16 3 C 0.11 1.49 3.83 -27.88 -0.11 1.39 16 4 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 5 F -0.19 -2.72 16.75 2.25 0.04 -2.68 16 6 C 0.43 7.79 7.28 36.00 0.26 8.05 16 7 O -0.50 -10.06 16.36 -18.76 -0.31 -10.37 16 8 O -0.32 -6.42 9.83 -39.27 -0.39 -6.81 16 9 C 0.07 1.44 4.59 37.16 0.17 1.61 16 10 C -0.01 -0.15 0.51 -154.58 -0.08 -0.22 16 11 C -0.49 -12.99 8.62 -34.44 -0.30 -13.29 16 12 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 13 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 14 N -0.89 -25.88 13.96 55.43 0.77 -25.10 16 15 Si 0.87 20.45 23.65 -169.99 -4.02 16.43 16 16 H -0.27 -6.29 6.74 56.52 0.38 -5.90 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.26 -5.65 4.91 56.52 0.28 -5.37 16 19 C 0.04 0.83 8.35 37.61 0.31 1.14 16 20 O -0.37 -8.35 12.40 -35.23 -0.44 -8.78 16 21 C 0.02 0.51 6.51 37.61 0.25 0.75 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.56 7.93 -51.93 -0.41 0.14 16 25 H 0.09 1.04 8.06 -51.93 -0.42 0.62 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.56 5.74 -51.93 -0.30 1.26 16 28 H 0.05 0.97 8.00 -51.93 -0.42 0.56 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 31 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 32 H 0.08 1.93 3.77 -51.93 -0.20 1.74 16 33 H 0.06 1.17 8.10 -51.92 -0.42 0.75 16 LS Contribution 278.75 15.07 4.20 4.20 Total: -1.00 -30.42 278.75 -3.90 -34.32 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.39 Total: 0.17 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 0.63 Total: -1.38 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.77 Total: -25.10 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.13 Total: -25.96 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.02 Total: 16.43 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.42 -3.90 -34.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123060504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.511 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds