Wall clock time and date at job start Sun Mar 29 2020 23:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35913 * 117.00310 * 2 1 4 4 C 1.38866 * 119.97813 * 0.02867 * 3 2 1 5 5 C 1.38241 * 120.24727 * 179.74231 * 4 3 2 6 6 C 1.37994 * 120.21708 * 0.50816 * 5 4 3 7 7 C 1.50701 * 120.02406 * 179.74543 * 6 5 4 8 8 N 1.46506 * 109.46802 * 259.72234 * 7 6 5 9 9 C 1.46496 * 119.99920 * 269.99860 * 8 7 6 10 10 C 1.36938 * 119.99740 * 89.99986 * 8 7 6 11 11 H 1.08002 * 119.99983 * 22.31209 * 10 8 7 12 12 C 1.38813 * 120.00041 * 202.31203 * 10 8 7 13 13 N 1.31614 * 119.99631 * 11.61908 * 12 10 8 14 14 Si 1.86794 * 119.99888 * 191.62060 * 12 10 8 15 15 H 1.48499 * 109.47490 * 90.00332 * 14 12 10 16 16 H 1.48508 * 109.46796 * 209.99840 * 14 12 10 17 17 H 1.48498 * 109.47285 * 329.99656 * 14 12 10 18 18 C 1.39628 * 119.95751 * 359.46687 * 6 5 4 19 19 C 1.43195 * 120.12813 * 180.30094 * 18 6 5 20 20 N 5.84235 * 152.72577 * 0.02562 * 2 1 3 21 21 C 1.38433 * 119.98301 * 179.97438 * 3 2 1 22 22 H 1.08994 * 109.47080 * 299.99595 * 1 2 3 23 23 H 1.09002 * 109.46898 * 59.99449 * 1 2 3 24 24 H 1.08998 * 109.47160 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.87209 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.89488 * 180.27225 * 5 4 3 27 27 H 1.09000 * 109.47331 * 139.72539 * 7 6 5 28 28 H 1.09000 * 109.47142 * 19.71942 * 7 6 5 29 29 H 1.08999 * 109.47155 * 93.08159 * 9 8 7 30 30 H 1.09004 * 109.47050 * 213.07834 * 9 8 7 31 31 H 1.08996 * 109.47384 * 333.08146 * 9 8 7 32 32 H 0.97003 * 120.00139 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.10681 * 0.02936 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2894 2.3753 0.0006 5 6 1.9112 3.6100 0.0060 6 6 3.2886 3.6938 0.0002 7 6 3.9620 5.0421 0.0003 8 7 4.3947 5.3718 -1.3600 9 6 5.7289 4.9784 -1.8198 10 6 3.5521 6.0478 -2.2016 11 1 2.7485 6.6447 -1.7962 12 6 3.7308 5.9657 -3.5757 13 7 4.5526 5.0699 -4.0801 14 14 2.8049 7.1267 -4.7089 15 1 3.6121 8.3538 -4.9273 16 1 2.5605 6.4567 -6.0115 17 1 1.5060 7.4924 -4.0889 18 6 4.0581 2.5287 0.0002 19 6 5.4877 2.6115 0.0007 20 7 6.6218 2.6773 0.0012 21 6 3.4285 1.2829 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2110 2.3161 0.0007 26 1 1.3172 4.5119 0.0109 27 1 4.8286 5.0153 0.6608 28 1 3.2604 5.7986 0.3518 29 1 5.6704 4.0117 -2.3199 30 1 6.1080 5.7258 -2.5169 31 1 6.4009 4.9051 -0.9648 32 1 4.6778 5.0128 -5.0403 33 1 4.0181 0.3781 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137704503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:48 Heat of formation + Delta-G solvation = 46.280943 kcal Electronic energy + Delta-G solvation = -17459.518786 eV Core-core repulsion = 14680.012715 eV Total energy + Delta-G solvation = -2779.506071 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.95465 -37.92530 -35.65611 -35.29304 -31.82651 -31.01855 -29.89787 -27.59172 -25.97554 -25.31439 -23.31415 -22.02551 -20.49741 -18.85038 -16.82761 -16.30737 -16.03024 -15.62448 -15.31752 -14.71279 -14.01347 -13.89372 -13.50455 -13.16813 -12.91258 -12.82955 -12.45146 -12.14873 -12.05361 -11.91597 -11.24867 -11.12549 -10.98250 -10.77921 -10.65213 -10.56488 -10.22039 -10.00722 -9.93037 -8.61982 -8.60267 -7.80522 -6.85531 -5.79024 -3.23339 1.17858 1.77969 3.12988 3.34529 3.40185 3.42293 3.43857 3.47175 4.26687 4.46864 4.53997 4.98891 5.15403 5.17070 5.21452 5.35714 5.45154 5.51884 5.64781 5.67715 5.88296 6.05948 6.29174 6.46779 6.48875 6.66428 6.79067 6.92804 7.02805 7.36382 7.56691 7.69187 7.76850 8.04713 8.31335 9.14913 9.76892 10.26063 11.25190 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.007834 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.602410 B = 3573.178084 C = 4374.080357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.101 3.899 4 C -0.177 4.177 5 C -0.071 4.071 6 C -0.063 4.063 7 C 0.174 3.826 8 N -0.586 5.586 9 C 0.161 3.839 10 C -0.256 4.256 11 H 0.073 0.927 12 C 0.004 3.996 13 N -0.900 5.900 14 Si 0.907 3.093 15 H -0.287 1.287 16 H -0.291 1.291 17 H -0.278 1.278 18 C 0.008 3.992 19 C 0.269 3.731 20 N -0.425 5.425 21 C -0.105 4.105 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.095 0.905 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.027 0.973 30 H 0.048 0.952 31 H 0.001 0.999 32 H 0.254 0.746 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 -6.669 9.036 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.056 3.944 4 C -0.197 4.197 5 C -0.090 4.090 6 C -0.070 4.070 7 C 0.047 3.953 8 N -0.306 5.306 9 C 0.017 3.983 10 C -0.386 4.386 11 H 0.090 0.910 12 C -0.195 4.195 13 N -0.543 5.543 14 Si 0.737 3.263 15 H -0.214 1.214 16 H -0.217 1.217 17 H -0.204 1.204 18 C 0.003 3.997 19 C -0.045 4.045 20 N -0.101 5.101 21 C -0.126 4.126 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.113 0.887 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.694 -6.736 8.816 12.958 hybrid contribution -1.307 0.492 -1.057 1.752 sum -8.001 -6.244 7.760 12.776 Atomic orbital electron populations 1.22992 0.78802 1.03466 1.01331 1.86024 1.21004 1.26957 1.89527 1.18530 0.91655 0.84127 1.00113 1.21355 0.99778 0.92424 1.06095 1.20715 0.93661 0.96895 0.97770 1.21237 0.93656 0.96889 0.95230 1.20072 0.96587 0.89808 0.88812 1.44202 1.12714 1.63572 1.10085 1.20941 0.83130 0.99803 0.94444 1.19261 1.11490 1.20678 0.87146 0.90951 1.25107 0.99226 0.97954 0.97211 1.70089 1.38903 1.33813 1.11524 0.86217 0.79470 0.80294 0.80314 1.21382 1.21708 1.20350 1.15509 0.84550 0.93409 1.06228 1.25418 0.92520 0.93208 0.93377 1.81128 1.12073 1.07703 1.09179 1.20137 0.91627 0.96743 1.04110 0.92821 0.92671 0.88659 0.85580 0.85143 0.93354 0.91916 0.95461 0.93314 0.98033 0.93542 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.35 10.49 -19.47 -0.20 -4.56 16 3 C 0.10 1.52 6.68 -39.28 -0.26 1.26 16 4 C -0.18 -2.53 9.03 -39.35 -0.36 -2.89 16 5 C -0.07 -1.15 9.65 -39.67 -0.38 -1.53 16 6 C -0.06 -1.17 5.50 -104.19 -0.57 -1.74 16 7 C 0.17 3.50 5.40 -5.19 -0.03 3.48 16 8 N -0.59 -14.56 2.91 -182.50 -0.53 -15.09 16 9 C 0.16 4.16 7.35 59.84 0.44 4.60 16 10 C -0.26 -6.81 9.67 -15.06 -0.15 -6.96 16 11 H 0.07 1.84 7.85 -52.49 -0.41 1.42 16 12 C 0.00 0.12 5.12 -17.43 -0.09 0.03 16 13 N -0.90 -26.25 10.60 55.49 0.59 -25.67 16 14 Si 0.91 21.47 29.57 -169.99 -5.03 16.45 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C 0.01 0.14 5.73 -106.95 -0.61 -0.47 16 19 C 0.27 5.31 11.82 -22.47 -0.27 5.05 16 20 N -0.43 -8.85 17.41 41.84 0.73 -8.12 16 21 C -0.10 -1.71 9.69 -39.01 -0.38 -2.08 16 22 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 23 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 24 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.13 1.42 6.28 -52.49 -0.33 1.09 16 26 H 0.13 1.91 8.03 -52.48 -0.42 1.48 16 27 H 0.05 0.93 7.20 -51.93 -0.37 0.56 16 28 H 0.06 1.15 7.89 -51.93 -0.41 0.74 16 29 H 0.03 0.76 7.12 -51.93 -0.37 0.40 16 30 H 0.05 1.35 7.11 -51.93 -0.37 0.98 16 31 H 0.00 0.03 6.57 -51.93 -0.34 -0.31 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 285.63 15.07 4.30 4.30 Total: -1.00 -30.96 285.63 -5.60 -36.57 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -3.80 Total: -3.88 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.66 Total: -0.01 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.79 Total: -48.88 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.20 Total: -4.56 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.96 -5.60 -36.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137704503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.848 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds