Wall clock time and date at job start Sun Mar 29 2020 22:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99779 * 2 1 4 4 H 1.48503 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47077 * 300.00187 * 3 2 1 6 6 H 1.48495 * 109.47120 * 60.00348 * 3 2 1 7 7 C 1.37884 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07989 * 119.99980 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99492 * 359.97438 * 7 2 1 10 10 N 1.46511 * 109.46583 * 180.02562 * 9 7 2 11 11 C 1.34770 * 119.99717 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00091 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99999 * 179.97438 * 11 10 9 14 14 H 1.09002 * 115.54929 * 34.41763 * 13 11 10 15 15 C 1.52999 * 117.51845 * 248.71846 * 13 11 10 16 16 C 1.53005 * 117.49884 * 180.08744 * 13 11 10 17 17 H 1.08992 * 117.49816 * 0.02572 * 16 13 11 18 18 C 1.50698 * 117.49376 * 215.02553 * 16 13 11 19 19 C 1.38651 * 120.79150 * 299.71678 * 18 16 13 20 20 C 1.38204 * 119.16183 * 179.80136 * 19 18 16 21 21 N 1.31872 * 120.76556 * 0.49220 * 20 19 18 22 22 C 1.31873 * 121.72455 * 359.73863 * 21 20 19 23 23 C 1.38209 * 120.76055 * 0.02562 * 22 21 20 24 24 H 0.96993 * 120.00319 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47303 * 60.00283 * 9 7 2 26 26 H 1.08994 * 109.47194 * 299.99983 * 9 7 2 27 27 H 0.96997 * 119.99554 * 359.97438 * 10 9 7 28 28 H 1.09003 * 117.50034 * 0.02562 * 15 13 11 29 29 H 1.08995 * 117.49797 * 145.02631 * 15 13 11 30 30 H 1.08007 * 120.41994 * 0.02562 * 19 18 16 31 31 H 1.08004 * 119.62001 * 180.20644 * 20 19 18 32 32 H 1.07993 * 119.61552 * 180.02562 * 22 21 20 33 33 H 1.08000 * 120.41307 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5614 -5.1049 0.0000 13 6 2.7331 -6.0288 -0.0006 14 1 3.6557 -5.8588 0.5545 15 6 2.8172 -6.8863 -1.2649 16 6 2.1606 -7.4477 -0.0020 17 1 1.0758 -7.5526 -0.0030 18 6 2.9152 -8.5031 0.7646 19 6 4.2244 -8.8196 0.4356 20 6 4.8860 -9.7901 1.1638 21 7 4.2832 -10.4185 2.1541 22 6 3.0377 -10.1468 2.4918 23 6 2.3148 -9.1850 1.8119 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 3.1567 -3.4354 -0.0009 28 1 2.1644 -6.6218 -2.0968 29 1 3.7950 -7.2805 -1.5415 30 1 4.7221 -8.3115 -0.3772 31 1 5.9071 -10.0401 0.9160 32 1 2.5774 -10.6821 3.3090 33 1 1.2952 -8.9667 2.0934 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139424317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:16 Heat of formation + Delta-G solvation = 13.055032 kcal Electronic energy + Delta-G solvation = -16409.704804 eV Core-core repulsion = 13628.757949 eV Total energy + Delta-G solvation = -2780.946854 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.54651 -39.17057 -36.61758 -34.20617 -32.38570 -32.03640 -31.32487 -27.62878 -24.94138 -24.21934 -23.37645 -22.01000 -20.87809 -19.55955 -17.67339 -16.96363 -16.30787 -15.75765 -15.63265 -15.21154 -14.59785 -14.45914 -14.02433 -13.89252 -13.67756 -13.27922 -12.33734 -12.10720 -11.97740 -11.90997 -11.68150 -11.18347 -10.96252 -10.93039 -10.53121 -10.34714 -9.64563 -9.47424 -9.41965 -9.31345 -9.08255 -8.78056 -7.94615 -6.20243 -4.27344 0.97163 1.03503 3.00710 3.21331 3.28444 3.31470 3.57380 3.87900 4.02756 4.29361 4.30060 4.50429 4.59553 4.74883 4.89343 4.94798 5.05066 5.15566 5.16412 5.41419 5.50132 5.57085 5.67986 5.81041 5.93273 6.00928 6.28444 6.53299 7.25414 7.36958 7.46431 7.62519 7.80231 7.92701 8.56913 8.73246 9.03172 9.39421 10.90030 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045388 B = 0.003747 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.753693 B = 7471.426116 C = 7625.402367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.705 5.705 11 C 0.526 3.474 12 O -0.556 6.556 13 C -0.165 4.165 14 H 0.121 0.879 15 C -0.143 4.143 16 C -0.098 4.098 17 H 0.131 0.869 18 C -0.001 4.001 19 C -0.175 4.175 20 C 0.099 3.901 21 N -0.493 5.493 22 C 0.099 3.901 23 C -0.164 4.164 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.392 0.608 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.882 -16.625 0.361 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.352 5.352 11 C 0.310 3.690 12 O -0.435 6.435 13 C -0.187 4.187 14 H 0.139 0.861 15 C -0.180 4.180 16 C -0.117 4.117 17 H 0.149 0.851 18 C -0.009 4.009 19 C -0.195 4.195 20 C -0.058 4.058 21 N -0.203 5.203 22 C -0.058 4.058 23 C -0.184 4.184 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.225 0.775 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.154 0.846 31 H 0.172 0.828 32 H 0.173 0.827 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.306 -17.246 0.831 19.160 hybrid contribution 0.398 1.795 -0.410 1.884 sum 8.704 -15.451 0.421 17.739 Atomic orbital electron populations 1.69980 1.06126 1.27260 1.48904 1.24961 0.94925 0.99506 0.94647 0.86348 0.79831 0.82884 0.77785 1.19608 1.20765 1.20759 1.21257 0.93328 0.90390 1.53221 0.91792 1.19149 0.88307 0.81929 0.97816 1.46397 1.11272 1.05859 1.71721 1.19442 0.88332 0.83730 0.77500 1.90659 1.16593 1.84846 1.51441 1.22448 1.01388 0.90842 1.04028 0.86076 1.23099 1.02718 1.00918 0.91271 1.21083 1.00176 0.90869 0.99562 0.85082 1.19606 0.93415 0.94025 0.93879 1.22085 0.95220 1.00153 1.02032 1.22725 0.99803 0.92221 0.91057 1.67665 1.10795 1.26429 1.15367 1.22756 0.90081 0.94789 0.98134 1.22063 1.02074 0.97673 0.96568 0.92456 0.95443 0.95450 0.77536 0.87439 0.87636 0.84607 0.82809 0.82705 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 10 N -0.71 -14.70 5.55 -61.47 -0.34 -15.05 16 11 C 0.53 10.31 7.61 -10.99 -0.08 10.23 16 12 O -0.56 -13.13 16.26 5.55 0.09 -13.04 16 13 C -0.17 -2.30 5.84 -91.77 -0.54 -2.84 16 14 H 0.12 1.46 8.14 -51.93 -0.42 1.03 16 15 C -0.14 -1.62 9.59 -26.73 -0.26 -1.87 16 16 C -0.10 -1.24 5.59 -91.77 -0.51 -1.75 16 17 H 0.13 1.84 7.67 -51.93 -0.40 1.44 16 18 C 0.00 -0.01 5.64 -104.32 -0.59 -0.60 16 19 C -0.18 -1.72 9.39 -39.44 -0.37 -2.09 16 20 C 0.10 0.98 11.18 -17.55 -0.20 0.78 16 21 N -0.49 -5.70 10.36 -13.25 -0.14 -5.84 16 22 C 0.10 1.03 11.18 -17.54 -0.20 0.83 16 23 C -0.16 -1.77 9.84 -39.44 -0.39 -2.16 16 24 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 28 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.11 0.90 6.26 -51.93 -0.32 0.57 16 30 H 0.14 1.04 6.16 -52.48 -0.32 0.72 16 31 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 293.39 15.07 4.42 4.42 Total: -1.00 -32.69 293.39 -7.70 -40.39 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.88 Total: 4.90 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.57 Total: -6.27 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.26 Total: -46.08 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.69 -7.70 -40.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139424317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.447 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds