Wall clock time and date at job start Sun Mar 29 2020 22:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48504 * 109.46975 * 269.99964 * 3 2 1 5 5 H 1.48501 * 109.47059 * 29.99701 * 3 2 1 6 6 H 1.48498 * 109.46947 * 149.99999 * 3 2 1 7 7 C 1.37882 * 119.99536 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99194 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99992 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.46972 * 180.02562 * 9 7 2 11 11 O 1.21302 * 119.99638 * 359.97438 * 10 9 7 12 12 N 1.34779 * 120.00183 * 180.02562 * 10 9 7 13 13 C 1.46538 * 125.00618 * 355.33365 * 12 10 9 14 14 C 1.53735 * 105.17326 * 179.97438 * 13 12 10 15 15 C 1.51226 * 104.61704 * 0.02562 * 14 13 12 16 16 C 1.38353 * 130.90754 * 179.97438 * 15 14 13 17 17 C 1.38201 * 120.29173 * 180.02562 * 16 15 14 18 18 C 1.38250 * 119.89163 * 0.02562 * 17 16 15 19 19 C 1.38428 * 120.13270 * 0.02562 * 18 17 16 20 20 N 1.39901 * 119.92369 * 179.97438 * 19 18 17 21 21 C 1.38337 * 108.58970 * 359.97438 * 15 14 13 22 22 H 0.96999 * 119.99691 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47296 * 60.00741 * 9 7 2 24 24 H 1.09000 * 109.47579 * 299.99834 * 9 7 2 25 25 H 1.09008 * 110.30121 * 61.05655 * 13 12 10 26 26 H 1.08998 * 110.30453 * 298.90632 * 13 12 10 27 27 H 1.08995 * 110.40811 * 118.78486 * 14 13 12 28 28 H 1.08997 * 110.41060 * 241.10209 * 14 13 12 29 29 H 1.07996 * 119.85548 * 0.02562 * 16 15 14 30 30 H 1.08001 * 120.04913 * 179.97438 * 17 16 15 31 31 H 1.07992 * 119.93414 * 179.97438 * 18 17 16 32 32 H 0.96998 * 119.99698 * 244.29407 * 20 19 18 33 33 H 0.96996 * 119.99727 * 64.28983 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 8 3.4228 -3.4230 -0.0010 12 7 1.7809 -4.9154 -0.0011 13 6 0.3727 -5.3092 0.0960 14 6 0.3807 -6.8459 0.0525 15 6 1.8418 -7.2166 -0.0694 16 6 2.4593 -8.4520 -0.1505 17 6 3.8344 -8.5383 -0.2574 18 6 4.5972 -7.3855 -0.2829 19 6 3.9863 -6.1461 -0.2011 20 7 4.7624 -4.9824 -0.2267 21 6 2.5911 -6.0540 -0.0946 22 1 -0.4849 0.8401 -0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 -0.1906 -4.9099 -0.7475 26 1 -0.0538 -4.9596 1.0361 27 1 -0.0393 -7.2543 0.9716 28 1 -0.1779 -7.2046 -0.8120 29 1 1.8641 -9.3529 -0.1302 30 1 4.3124 -9.5047 -0.3201 31 1 5.6719 -7.4522 -0.3660 32 1 4.7868 -4.3986 0.5475 33 1 5.2761 -4.7595 -1.0187 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143200989.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:52 Heat of formation + Delta-G solvation = 23.466333 kcal Electronic energy + Delta-G solvation = -17612.202621 eV Core-core repulsion = 14831.707235 eV Total energy + Delta-G solvation = -2780.495387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.62976 -37.91255 -36.20911 -33.63351 -32.95206 -31.10794 -29.36749 -28.44661 -27.57005 -24.14670 -22.79974 -21.84892 -21.01382 -18.64164 -17.23635 -16.19054 -16.04781 -15.88685 -15.60147 -14.93637 -14.65217 -14.20048 -13.88183 -13.72358 -13.06544 -12.45545 -12.33719 -12.05589 -11.99519 -11.72955 -11.47277 -11.23112 -11.04807 -10.81761 -10.71043 -10.04625 -9.76715 -9.36662 -9.24282 -8.49532 -8.36785 -7.58913 -6.86555 -6.12065 -4.12340 1.61082 1.69274 3.30763 3.35985 3.39339 3.47837 3.50981 4.13059 4.42021 4.71389 4.73644 4.86372 5.24387 5.27655 5.29793 5.38918 5.50551 5.69455 5.86682 5.96272 6.00649 6.05924 6.24134 6.55268 6.64966 6.79415 6.92112 7.07427 7.22794 7.28791 7.90060 7.92924 8.26189 8.50951 8.74777 8.97402 9.17358 9.52907 11.00265 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.037656 B = 0.006162 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.397939 B = 4542.902402 C = 5254.221886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.076 0.924 9 C 0.013 3.987 10 C 0.520 3.480 11 O -0.501 6.501 12 N -0.565 5.565 13 C 0.105 3.895 14 C -0.083 4.083 15 C -0.139 4.139 16 C -0.102 4.102 17 C -0.139 4.139 18 C -0.129 4.129 19 C 0.166 3.834 20 N -0.889 5.889 21 C 0.130 3.870 22 H 0.262 0.738 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.404 0.596 33 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 -15.409 -0.134 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.094 0.906 9 C -0.027 4.027 10 C 0.313 3.687 11 O -0.374 6.374 12 N -0.290 5.290 13 C -0.018 4.018 14 C -0.121 4.121 15 C -0.144 4.144 16 C -0.121 4.121 17 C -0.159 4.159 18 C -0.151 4.151 19 C 0.064 3.936 20 N -0.449 5.449 21 C 0.031 3.969 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.243 0.757 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.174 -14.993 -0.080 15.150 hybrid contribution 0.327 1.140 -0.091 1.190 sum 2.501 -13.853 -0.171 14.078 Atomic orbital electron populations 1.69955 1.06069 1.27028 1.50838 1.25006 0.94920 0.99520 0.95074 0.86405 0.79802 0.82553 0.78178 1.20598 1.21230 1.19681 1.21137 0.94201 0.88960 1.50554 0.90637 1.19254 0.93940 0.90012 0.99457 1.22204 0.91635 0.82027 0.72838 1.90414 1.16861 1.83024 1.47073 1.46637 1.06648 1.04792 1.70944 1.22019 0.82479 0.94210 1.03090 1.21076 0.93453 0.94501 1.03025 1.19955 0.94991 0.92555 1.06870 1.20190 0.94322 0.95358 1.02276 1.20738 0.93395 0.97739 1.04052 1.21068 0.99480 0.91170 1.03388 1.17207 0.87046 0.88423 1.00895 1.42549 1.56692 1.25121 1.20572 1.19316 0.91652 0.86975 0.98992 0.92815 0.93374 0.93384 0.90065 0.90204 0.89708 0.89680 0.86516 0.86316 0.86120 0.75747 0.79126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.48 8.92 -34.44 -0.31 -14.79 16 8 H 0.08 2.21 6.75 -52.49 -0.35 1.86 16 9 C 0.01 0.32 4.61 -29.04 -0.13 0.18 16 10 C 0.52 11.92 7.78 -10.98 -0.09 11.83 16 11 O -0.50 -12.11 10.44 5.54 0.06 -12.05 16 12 N -0.56 -10.85 3.13 -112.71 -0.35 -11.21 16 13 C 0.10 1.58 6.68 -3.64 -0.02 1.56 16 14 C -0.08 -1.02 6.93 -27.24 -0.19 -1.21 16 15 C -0.14 -2.06 6.23 -104.29 -0.65 -2.71 16 16 C -0.10 -1.30 10.03 -39.55 -0.40 -1.70 16 17 C -0.14 -1.75 10.05 -39.59 -0.40 -2.15 16 18 C -0.13 -1.86 9.94 -39.51 -0.39 -2.25 16 19 C 0.17 2.90 6.76 -83.36 -0.56 2.34 16 20 N -0.89 -16.05 6.20 32.62 0.20 -15.85 16 21 C 0.13 2.34 6.64 -83.31 -0.55 1.78 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.40 7.97 6.70 -41.28 -0.28 7.69 16 33 H 0.38 6.43 8.96 -40.82 -0.37 6.07 16 LS Contribution 277.69 15.07 4.18 4.18 Total: -1.00 -30.92 277.69 -7.92 -38.84 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -3.94 Total: 10.20 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -3.79 Total: -5.65 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.59 Total: -52.34 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.06 Total: -12.05 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.92 -7.92 -38.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143200989.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.303 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds