Wall clock time and date at job start Sun Mar 29 2020 22:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99862 * 2 1 4 4 H 1.48494 * 109.47024 * 269.99877 * 3 2 1 5 5 H 1.48494 * 109.46936 * 30.00060 * 3 2 1 6 6 H 1.48505 * 109.46971 * 150.00135 * 3 2 1 7 7 C 1.37873 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00197 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00144 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47260 * 180.02562 * 9 7 2 11 11 O 1.21282 * 120.00449 * 359.97438 * 10 9 7 12 12 N 1.34787 * 119.99808 * 180.02562 * 10 9 7 13 13 C 1.46494 * 119.99868 * 184.99377 * 12 10 9 14 14 C 1.50695 * 115.55109 * 294.79112 * 13 12 10 15 15 C 1.38674 * 120.42381 * 98.13895 * 14 13 12 16 16 C 1.38626 * 118.42207 * 180.02562 * 15 14 13 17 17 C 1.38224 * 119.16529 * 359.97438 * 16 15 14 18 18 N 1.31859 * 120.76064 * 0.02562 * 17 16 15 19 19 C 1.31889 * 121.72509 * 359.97438 * 18 17 16 20 20 C 1.53003 * 117.49938 * 80.45520 * 13 12 10 21 21 C 1.52999 * 117.50187 * 149.11462 * 13 12 10 22 22 H 0.97001 * 120.00242 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47387 * 60.00052 * 9 7 2 24 24 H 1.09002 * 109.47411 * 300.00307 * 9 7 2 25 25 H 0.96995 * 119.99991 * 4.99873 * 12 10 9 26 26 H 1.08003 * 120.78908 * 0.04107 * 15 14 13 27 27 H 1.08009 * 120.41869 * 180.02562 * 16 15 14 28 28 H 1.08002 * 119.62465 * 180.02562 * 17 16 15 29 29 H 1.07998 * 119.61210 * 179.97438 * 19 18 17 30 30 H 1.08997 * 117.50278 * 215.00398 * 20 13 12 31 31 H 1.09001 * 117.49517 * 0.02562 * 20 13 12 32 32 H 1.09010 * 117.49441 * 359.97438 * 21 13 12 33 33 H 1.08994 * 117.50306 * 144.99297 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 8 3.4228 -3.4230 -0.0010 12 7 1.7811 -4.9153 -0.0011 13 6 2.7285 -6.0272 0.1094 14 6 3.6828 -6.1852 -1.0461 15 6 4.9716 -5.6794 -0.9667 16 6 5.8146 -5.8476 -2.0542 17 6 5.3462 -6.5096 -3.1736 18 7 4.1141 -6.9776 -3.2140 19 6 3.2847 -6.8358 -2.1983 20 6 3.2457 -6.3786 1.5058 21 6 2.2449 -7.3010 0.8054 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 0.8305 -5.0936 -0.0746 26 1 5.3106 -5.1669 -0.0785 27 1 6.8250 -5.4670 -2.0269 28 1 5.9968 -6.6452 -4.0249 29 1 2.2825 -7.2322 -2.2684 30 1 4.2762 -6.7240 1.5887 31 1 2.8807 -5.7827 2.3423 32 1 1.2218 -7.3115 1.1816 33 1 2.6168 -8.2533 0.4275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:36 Heat of formation + Delta-G solvation = 21.104850 kcal Electronic energy + Delta-G solvation = -17263.142940 eV Core-core repulsion = 14482.545152 eV Total energy + Delta-G solvation = -2780.597788 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.36165 -38.74576 -36.78754 -32.94024 -32.34199 -31.99429 -30.86008 -28.76260 -24.35517 -23.68239 -23.48813 -22.13978 -20.63179 -19.28723 -17.21584 -16.48485 -16.21926 -15.97815 -15.74578 -15.01580 -14.43450 -14.23178 -13.85635 -13.57349 -13.26896 -12.84384 -12.65454 -12.10911 -11.82813 -11.54376 -11.33339 -10.90539 -10.79569 -10.60146 -10.29002 -9.96966 -9.65269 -9.41055 -9.29243 -9.04078 -8.56876 -8.48007 -8.42027 -6.07458 -4.06999 1.19750 1.47548 3.33462 3.38705 3.44352 3.54742 3.64501 3.77570 4.05893 4.42394 4.47836 4.68657 4.83765 5.01201 5.08155 5.26208 5.31047 5.34356 5.45575 5.55479 5.76749 5.82788 5.91166 6.09886 6.26238 6.31944 6.49306 6.82136 7.02184 7.16747 7.30389 7.93933 8.02563 8.06331 8.41105 9.03642 9.21163 9.58207 11.04975 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.006048 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.725055 B = 4628.797413 C = 5154.958606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.507 4.507 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.518 3.482 11 O -0.534 6.534 12 N -0.716 5.716 13 C 0.145 3.855 14 C -0.102 4.102 15 C -0.030 4.030 16 C -0.179 4.179 17 C 0.093 3.907 18 N -0.492 5.492 19 C 0.111 3.889 20 C -0.168 4.168 21 C -0.167 4.167 22 H 0.262 0.738 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.399 0.601 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -15.264 -0.321 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.093 0.907 9 C -0.033 4.033 10 C 0.308 3.692 11 O -0.409 6.409 12 N -0.370 5.370 13 C 0.056 3.944 14 C -0.105 4.105 15 C -0.056 4.056 16 C -0.199 4.199 17 C -0.064 4.064 18 N -0.201 5.201 19 C -0.046 4.046 20 C -0.206 4.206 21 C -0.204 4.204 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.234 0.766 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.169 0.831 29 H 0.168 0.832 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.948 -15.363 -1.057 16.508 hybrid contribution 0.127 1.394 0.708 1.569 sum 6.075 -13.969 -0.348 15.237 Atomic orbital electron populations 1.69955 1.06039 1.26921 1.51133 1.25004 0.94906 0.99474 0.95226 0.86437 0.79837 0.82694 0.78177 1.20620 1.21241 1.19694 1.21143 0.94214 0.89060 1.50120 0.90712 1.19237 0.94148 0.90472 0.99427 1.22065 0.91241 0.82964 0.72912 1.90503 1.17898 1.84362 1.48099 1.45842 1.08681 1.04481 1.78018 1.18739 0.94460 0.89969 0.91212 1.20101 0.94539 0.99882 0.95988 1.21538 0.92450 0.92821 0.98820 1.22139 1.01411 1.01433 0.94894 1.22707 0.92379 0.94082 0.97214 1.67690 1.04140 1.19435 1.28789 1.22519 0.98766 0.95236 0.88104 1.23338 0.99252 1.02282 0.95771 1.23328 1.00411 0.93642 1.03050 0.92893 0.93586 0.93446 0.76605 0.84394 0.84940 0.83075 0.83185 0.88443 0.88026 0.87878 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.64 8.92 -34.44 -0.31 -14.95 16 8 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 9 C 0.01 0.16 5.46 -29.04 -0.16 0.00 16 10 C 0.52 11.49 7.71 -10.98 -0.08 11.41 16 11 O -0.53 -13.23 13.64 5.56 0.08 -13.15 16 12 N -0.72 -12.05 5.44 -48.69 -0.27 -12.31 16 13 C 0.15 2.10 1.86 -132.98 -0.25 1.85 16 14 C -0.10 -1.55 4.81 -104.48 -0.50 -2.06 16 15 C -0.03 -0.46 8.34 -39.28 -0.33 -0.79 16 16 C -0.18 -2.41 10.11 -39.44 -0.40 -2.81 16 17 C 0.09 1.24 11.18 -17.54 -0.20 1.05 16 18 N -0.49 -7.43 10.36 -13.25 -0.14 -7.57 16 19 C 0.11 1.62 10.85 -17.55 -0.19 1.43 16 20 C -0.17 -2.16 9.88 -26.69 -0.26 -2.42 16 21 C -0.17 -1.78 10.12 -26.69 -0.27 -2.05 16 22 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 23 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.40 5.66 8.83 -40.82 -0.36 5.30 16 26 H 0.14 2.22 7.71 -52.48 -0.40 1.81 16 27 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.10 1.15 8.06 -51.93 -0.42 0.73 16 31 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -33.13 292.86 -7.30 -40.43 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.06 Total: 4.60 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -3.05 Total: -7.87 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.33 Total: -45.57 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.13 -7.30 -40.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.531 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds