Wall clock time and date at job start Sun Mar 29 2020 22:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99666 * 2 1 4 4 H 1.48498 * 109.47195 * 270.00151 * 3 2 1 5 5 H 1.48497 * 109.47042 * 29.99939 * 3 2 1 6 6 H 1.48506 * 109.46884 * 149.99954 * 3 2 1 7 7 C 1.37874 * 120.00577 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99434 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00367 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.47414 * 180.02562 * 9 7 2 11 11 C 1.34770 * 119.99968 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00339 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99538 * 179.97438 * 11 10 9 14 14 H 1.08992 * 115.55256 * 34.32799 * 13 11 10 15 15 C 1.53072 * 117.51105 * 248.60261 * 13 11 10 16 16 C 1.53000 * 117.49448 * 179.97438 * 13 11 10 17 17 H 1.08997 * 117.50208 * 359.97438 * 16 13 11 18 18 C 1.50704 * 117.49715 * 214.99850 * 16 13 11 19 19 C 1.38675 * 120.41697 * 120.08822 * 18 16 13 20 20 C 1.38628 * 118.42013 * 180.02562 * 19 18 16 21 21 C 1.38220 * 119.16327 * 0.02562 * 20 19 18 22 22 N 1.31857 * 120.76192 * 359.97200 * 21 20 19 23 23 C 1.31883 * 121.72598 * 0.02562 * 22 21 20 24 24 H 0.96999 * 120.00625 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47435 * 59.99833 * 9 7 2 26 26 H 1.09008 * 109.46946 * 300.00039 * 9 7 2 27 27 H 0.97003 * 119.99600 * 359.97438 * 10 9 7 28 28 H 1.08999 * 117.51501 * 145.04689 * 15 13 11 29 29 H 1.09003 * 117.49541 * 0.02562 * 15 13 11 30 30 H 1.07998 * 120.78542 * 359.75048 * 19 18 16 31 31 H 1.07996 * 120.41751 * 179.97438 * 20 19 18 32 32 H 1.07997 * 119.62210 * 179.97438 * 21 20 19 33 33 H 1.08007 * 119.61726 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0010 11 6 5.3250 -2.8213 0.0020 12 8 6.1131 -1.8995 0.0025 13 6 5.8274 -4.2421 0.0024 14 1 5.2189 -4.9561 -0.5525 15 6 6.5292 -4.7435 1.2670 16 6 7.3424 -4.4556 0.0029 17 1 7.9758 -3.5686 0.0025 18 6 7.8788 -5.6373 -0.7634 19 6 8.7700 -5.4499 -1.8092 20 6 9.2368 -6.5660 -2.4862 21 6 8.8012 -7.8194 -2.0994 22 7 7.9529 -7.9598 -1.0998 23 6 7.4882 -6.9209 -0.4334 24 1 -0.4851 0.8400 -0.0004 25 1 3.8745 -0.6799 0.8911 26 1 3.8752 -0.6802 -0.8889 27 1 3.3697 -3.3124 0.0010 28 1 6.3823 -5.7875 1.5441 29 1 6.6269 -4.0457 2.0986 30 1 9.0893 -4.4578 -2.0924 31 1 9.9314 -6.4573 -3.3060 32 1 9.1598 -8.6939 -2.6220 33 1 6.7941 -7.0753 0.3796 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156058480.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:01 Heat of formation + Delta-G solvation = 17.332732 kcal Electronic energy + Delta-G solvation = -16468.319479 eV Core-core repulsion = 13687.558119 eV Total energy + Delta-G solvation = -2780.761359 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.62188 -39.25704 -36.60623 -34.30748 -32.61807 -32.36414 -31.03089 -28.22571 -24.82039 -24.28241 -23.41269 -21.70956 -20.88396 -19.71486 -17.73848 -17.35134 -16.50138 -16.04148 -15.63542 -14.99979 -14.73267 -14.37845 -14.15112 -14.02851 -13.34416 -13.23549 -12.60853 -12.46603 -12.16838 -12.09486 -11.87845 -11.24183 -10.97519 -10.81253 -10.51738 -10.00004 -9.90234 -9.63200 -9.53335 -9.37094 -8.93859 -8.80738 -8.20391 -6.23777 -4.26419 0.85191 1.07140 2.90718 3.24646 3.31350 3.39247 3.49910 3.80211 3.99390 4.22665 4.31000 4.53497 4.60332 4.71851 4.80296 4.80553 4.97623 5.11204 5.12408 5.31276 5.37830 5.56402 5.65552 5.84635 5.91042 5.99720 6.17916 6.47596 6.76460 7.02852 7.17199 7.35323 7.75701 8.09842 8.47664 8.71926 8.87618 9.35933 10.88140 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046743 B = 0.003959 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.882070 B = 7070.852102 C = 7222.236546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.699 5.699 11 C 0.529 3.471 12 O -0.559 6.559 13 C -0.170 4.170 14 H 0.123 0.877 15 C -0.144 4.144 16 C -0.089 4.089 17 H 0.129 0.871 18 C -0.097 4.097 19 C -0.067 4.067 20 C -0.170 4.170 21 C 0.088 3.912 22 N -0.483 5.483 23 C 0.097 3.903 24 H 0.268 0.732 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.398 0.602 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.154 0.846 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.365 -13.236 -1.916 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.346 5.346 11 C 0.313 3.687 12 O -0.439 6.439 13 C -0.191 4.191 14 H 0.141 0.859 15 C -0.181 4.181 16 C -0.108 4.108 17 H 0.147 0.853 18 C -0.099 4.099 19 C -0.093 4.093 20 C -0.190 4.190 21 C -0.069 4.069 22 N -0.191 5.191 23 C -0.060 4.060 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.232 0.768 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.171 0.829 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.437 -13.271 -1.683 21.193 hybrid contribution 0.182 1.428 -0.401 1.494 sum 16.620 -11.843 -2.085 20.514 Atomic orbital electron populations 1.69875 1.06212 1.27466 1.49330 1.24797 0.94795 0.99177 0.93843 0.86815 0.80557 0.83239 0.79062 1.19834 1.20849 1.18527 1.21087 0.88466 0.95280 1.53422 0.90198 1.19521 0.95321 0.78548 0.96821 1.46118 1.05502 1.11142 1.71836 1.19492 0.83198 0.88881 0.77086 1.90642 1.55741 1.45873 1.51617 1.22445 0.95207 0.97116 1.04334 0.85893 1.23130 1.01191 1.02543 0.91253 1.20973 0.92756 0.97739 0.99312 0.85299 1.20194 0.97952 0.94893 0.96869 1.21503 0.94651 0.99738 0.93428 1.22150 1.01795 0.93623 1.01402 1.22765 0.93601 0.96960 0.93574 1.67712 1.10105 1.34369 1.06893 1.22722 0.97681 0.87523 0.98095 0.92219 0.95633 0.96114 0.76806 0.87522 0.87415 0.84538 0.84709 0.82851 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.54 -14.90 9.83 -34.44 -0.34 -15.23 16 8 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 9 C 0.22 5.39 4.50 -5.19 -0.02 5.36 16 10 N -0.70 -14.06 5.55 -61.47 -0.34 -14.40 16 11 C 0.53 9.89 7.61 -10.99 -0.08 9.81 16 12 O -0.56 -12.42 16.26 5.56 0.09 -12.33 16 13 C -0.17 -2.28 5.83 -91.73 -0.53 -2.81 16 14 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 15 C -0.14 -1.57 9.58 -26.67 -0.26 -1.83 16 16 C -0.09 -1.06 5.58 -91.75 -0.51 -1.58 16 17 H 0.13 1.70 7.67 -51.93 -0.40 1.31 16 18 C -0.10 -1.07 5.62 -104.48 -0.59 -1.66 16 19 C -0.07 -0.67 9.89 -39.28 -0.39 -1.06 16 20 C -0.17 -1.47 10.11 -39.44 -0.40 -1.87 16 21 C 0.09 0.83 11.18 -17.55 -0.20 0.63 16 22 N -0.48 -5.58 10.36 -13.25 -0.14 -5.71 16 23 C 0.10 1.05 10.47 -17.55 -0.18 0.87 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 26 H 0.02 0.53 7.57 -51.92 -0.39 0.14 16 27 H 0.40 7.07 8.32 -40.82 -0.34 6.73 16 28 H 0.11 0.89 6.21 -51.93 -0.32 0.57 16 29 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 32 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.16 1.41 6.04 -52.48 -0.32 1.09 16 LS Contribution 289.63 15.07 4.36 4.36 Total: -1.00 -32.75 289.63 -7.36 -40.10 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -3.84 Total: 4.22 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -3.60 Total: -7.28 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.30 Total: -45.74 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.75 -7.36 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156058480.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.436 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds