Wall clock time and date at job start Sun Mar 29 2020 22:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48497 * 109.47071 * 269.99923 * 3 2 1 5 5 H 1.48503 * 109.47032 * 29.99872 * 3 2 1 6 6 H 1.48497 * 109.47305 * 149.99782 * 3 2 1 7 7 C 1.37879 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99552 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00363 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47281 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99800 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00289 * 5.18256 * 11 10 9 13 13 C 1.50695 * 119.99523 * 185.18097 * 11 10 9 14 14 C 1.50702 * 115.55260 * 65.66380 * 13 11 10 15 15 C 1.38673 * 120.41629 * 29.97020 * 14 13 11 16 16 C 1.38632 * 118.42138 * 180.02562 * 15 14 13 17 17 C 1.38229 * 119.16121 * 0.02562 * 16 15 14 18 18 N 1.31858 * 120.76284 * 359.97438 * 17 16 15 19 19 C 1.31883 * 121.72272 * 0.02562 * 18 17 16 20 20 C 1.53004 * 117.49806 * 211.33003 * 13 11 10 21 21 C 1.53001 * 117.50365 * 279.99112 * 13 11 10 22 22 H 0.97001 * 119.99598 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46941 * 60.00400 * 9 7 2 24 24 H 1.09001 * 109.47037 * 299.99955 * 9 7 2 25 25 H 0.96994 * 119.99918 * 0.02562 * 10 9 7 26 26 H 1.08000 * 120.78961 * 0.04370 * 15 14 13 27 27 H 1.07998 * 120.42439 * 180.02562 * 16 15 14 28 28 H 1.07997 * 119.61730 * 180.02562 * 17 16 15 29 29 H 1.08004 * 119.61429 * 179.97438 * 19 18 17 30 30 H 1.09003 * 117.50069 * 215.00051 * 20 13 11 31 31 H 1.08999 * 117.49526 * 0.03041 * 20 13 11 32 32 H 1.08999 * 117.49493 * 359.97438 * 21 13 11 33 33 H 1.08996 * 117.50235 * 144.99802 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 0.0013 11 6 5.3248 -2.8217 0.0005 12 8 6.1123 -1.9040 0.0936 13 6 5.8279 -4.2374 -0.1159 14 6 5.5363 -4.9253 -1.4247 15 6 5.4381 -4.1912 -2.5971 16 6 5.1680 -4.8661 -3.7775 17 6 5.0061 -6.2385 -3.7468 18 7 5.1063 -6.9043 -2.6131 19 6 5.3623 -6.2953 -1.4716 20 6 7.1453 -4.5788 0.5833 21 6 5.8209 -5.0962 1.1503 22 1 -0.4849 0.8401 -0.0004 23 1 3.8751 -0.6798 0.8895 24 1 3.8744 -0.6809 -0.8905 25 1 3.3694 -3.3126 0.0020 26 1 5.5693 -3.1192 -2.5907 27 1 5.0851 -4.3265 -4.7093 28 1 4.7958 -6.7718 -4.6621 29 1 5.4367 -6.8742 -0.5628 30 1 7.8010 -5.3009 0.0968 31 1 7.6478 -3.7794 1.1280 32 1 5.4528 -4.6370 2.0678 33 1 5.6053 -6.1586 1.0368 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156059065.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:34 Heat of formation + Delta-G solvation = 21.825984 kcal Electronic energy + Delta-G solvation = -17203.166957 eV Core-core repulsion = 14422.600439 eV Total energy + Delta-G solvation = -2780.566517 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.69239 -39.09911 -36.53681 -34.36857 -32.51584 -32.30986 -30.86697 -28.24588 -25.06610 -23.68993 -22.95678 -22.26660 -21.27919 -19.47375 -17.76932 -17.11076 -16.40145 -15.98067 -15.39937 -15.18589 -14.67367 -14.37034 -14.01297 -13.88744 -13.40512 -13.01763 -12.70792 -12.36002 -12.20543 -12.04748 -11.52217 -11.26518 -10.91275 -10.82343 -10.66319 -10.01959 -9.78489 -9.67149 -9.54162 -9.18730 -8.85552 -8.82241 -8.23266 -6.25141 -4.27867 1.01221 1.24982 2.95689 3.22736 3.29685 3.37506 3.51787 3.73965 4.01180 4.26142 4.29222 4.51701 4.73474 4.83029 4.95488 4.96365 5.05888 5.09876 5.23028 5.42540 5.50849 5.69478 5.76366 5.82598 6.04451 6.12146 6.24115 6.62237 6.72604 6.99625 7.13725 7.32706 7.89270 8.07398 8.44873 8.69765 8.83112 9.34263 10.86796 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024625 B = 0.006262 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.791438 B = 4470.573052 C = 4993.757028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.695 5.695 11 C 0.539 3.461 12 O -0.551 6.551 13 C -0.121 4.121 14 C -0.087 4.087 15 C -0.060 4.060 16 C -0.165 4.165 17 C 0.090 3.910 18 N -0.483 5.483 19 C 0.099 3.901 20 C -0.134 4.134 21 C -0.156 4.156 22 H 0.268 0.732 23 H 0.027 0.973 24 H 0.020 0.980 25 H 0.398 0.602 26 H 0.134 0.866 27 H 0.137 0.863 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.313 -11.632 -3.271 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.343 5.343 11 C 0.322 3.678 12 O -0.430 6.430 13 C -0.125 4.125 14 C -0.089 4.089 15 C -0.086 4.086 16 C -0.184 4.184 17 C -0.066 4.066 18 N -0.191 5.191 19 C -0.058 4.058 20 C -0.171 4.171 21 C -0.193 4.193 22 H 0.078 0.922 23 H 0.045 0.955 24 H 0.038 0.962 25 H 0.232 0.768 26 H 0.152 0.848 27 H 0.154 0.846 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.550 -11.727 -3.235 16.774 hybrid contribution -0.022 1.598 -0.130 1.603 sum 11.528 -10.129 -3.365 15.710 Atomic orbital electron populations 1.69877 1.06207 1.27454 1.49244 1.24790 0.94784 0.99125 0.93844 0.86834 0.80610 0.83305 0.79053 1.19846 1.20801 1.18506 1.21069 0.88406 0.95268 1.53478 0.90228 1.19531 0.95409 0.78421 0.96805 1.46146 1.05428 1.11136 1.71558 1.19212 0.83227 0.88033 0.77288 1.90660 1.55875 1.45518 1.50950 1.20144 1.05260 0.94804 0.92258 1.19784 1.01240 0.94608 0.93261 1.21523 0.94442 1.00919 0.91708 1.22149 1.01163 0.95943 0.99175 1.22754 0.95895 0.91668 0.96309 1.67710 1.12093 1.40569 0.98708 1.22610 0.95652 0.91200 0.96325 1.23060 0.89714 1.02959 1.01389 1.23202 1.01072 0.99488 0.95561 0.92212 0.95524 0.96219 0.76800 0.84772 0.84557 0.82748 0.82681 0.87963 0.87276 0.87503 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.96 55.43 0.77 -25.55 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.54 -14.85 9.83 -34.44 -0.34 -15.19 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.22 5.36 4.50 -5.19 -0.02 5.34 16 10 N -0.70 -14.11 5.55 -61.47 -0.34 -14.45 16 11 C 0.54 10.20 5.99 -10.99 -0.07 10.14 16 12 O -0.55 -12.35 16.71 5.56 0.09 -12.26 16 13 C -0.12 -1.72 2.37 -156.81 -0.37 -2.09 16 14 C -0.09 -1.18 5.49 -104.48 -0.57 -1.76 16 15 C -0.06 -0.84 9.44 -39.28 -0.37 -1.21 16 16 C -0.16 -1.96 10.11 -39.44 -0.40 -2.35 16 17 C 0.09 1.05 11.18 -17.54 -0.20 0.85 16 18 N -0.48 -6.35 10.36 -13.25 -0.14 -6.48 16 19 C 0.10 1.23 10.53 -17.55 -0.18 1.05 16 20 C -0.13 -1.59 9.74 -26.69 -0.26 -1.85 16 21 C -0.16 -1.73 9.58 -26.69 -0.26 -1.99 16 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 24 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 25 H 0.40 7.46 8.33 -40.82 -0.34 7.12 16 26 H 0.13 2.05 7.44 -52.49 -0.39 1.66 16 27 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 28 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.16 1.55 5.97 -52.48 -0.31 1.23 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.11 1.39 8.00 -51.93 -0.42 0.98 16 32 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.11 0.92 6.13 -51.93 -0.32 0.60 16 LS Contribution 288.21 15.07 4.34 4.34 Total: -1.00 -32.17 288.21 -6.89 -39.06 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.81 Total: 5.74 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.14 Total: -6.96 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.30 Total: -46.49 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.17 -6.89 -39.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156059065.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.883 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds