Wall clock time and date at job start Sun Mar 29 2020 22:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86801 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47085 * 240.00144 * 3 2 1 5 5 H 1.48500 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47213 * 119.99718 * 3 2 1 7 7 C 1.40023 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00054 * 163.17454 * 7 2 1 9 9 C 1.41556 * 120.00230 * 343.17344 * 7 2 1 10 10 C 1.41184 * 120.98960 * 336.09502 * 9 7 2 11 11 C 1.36563 * 119.14961 * 180.02562 * 10 9 7 12 12 N 1.32096 * 121.26091 * 359.73147 * 11 10 9 13 13 C 1.32535 * 122.21915 * 0.56204 * 12 11 10 14 14 N 1.39082 * 119.65808 * 179.70717 * 13 12 11 15 15 C 1.46494 * 119.99968 * 179.73289 * 14 13 12 16 16 C 1.53001 * 109.47336 * 180.02562 * 15 14 13 17 17 C 1.53674 * 113.82969 * 175.00158 * 16 15 14 18 18 C 1.51405 * 87.41079 * 139.85003 * 17 16 15 19 19 O 1.20761 * 136.31440 * 153.99345 * 18 17 16 20 20 C 1.51399 * 87.36767 * 334.24969 * 18 17 16 21 21 C 1.38745 * 120.68486 * 359.44323 * 13 12 11 22 22 H 0.97005 * 120.00130 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.43137 * 0.02562 * 10 9 7 24 24 H 1.07997 * 119.37090 * 180.02562 * 11 10 9 25 25 H 0.96995 * 120.00060 * 359.73233 * 14 13 12 26 26 H 1.09004 * 109.47222 * 60.00448 * 15 14 13 27 27 H 1.09003 * 109.47707 * 300.00237 * 15 14 13 28 28 H 1.08996 * 113.00650 * 43.14170 * 16 15 14 29 29 H 1.09000 * 113.56004 * 25.21199 * 17 16 15 30 30 H 1.09001 * 113.55776 * 254.48676 * 17 16 15 31 31 H 1.09001 * 113.56057 * 140.38377 * 20 18 17 32 32 H 1.08999 * 113.56590 * 271.11939 * 20 18 17 33 33 H 1.08003 * 120.66653 * 180.29350 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0075 -1.2126 0.0005 8 1 3.0528 -1.2328 -0.2702 9 6 1.3452 -2.4122 0.3559 10 6 0.1903 -2.3918 1.1678 11 6 -0.4185 -3.5716 1.4881 12 7 0.0498 -4.7260 1.0488 13 6 1.1326 -4.8061 0.2888 14 7 1.5825 -6.0507 -0.1390 15 6 2.7752 -6.1475 -0.9842 16 6 3.0509 -7.6166 -1.3109 17 6 4.2127 -7.8264 -2.2947 18 6 4.6269 -9.0100 -1.4462 19 8 5.2312 -10.0408 -1.6209 20 6 3.9396 -8.3275 -0.2826 21 6 1.8189 -3.6610 -0.0889 22 1 -0.4850 0.8401 0.0004 23 1 -0.2067 -1.4554 1.5309 24 1 -1.3024 -3.5601 2.1085 25 1 1.1067 -6.8545 0.1221 26 1 3.6303 -5.7259 -0.4557 27 1 2.6111 -5.5946 -1.9091 28 1 2.1494 -8.1720 -1.5694 29 1 4.9383 -7.0130 -2.2918 30 1 3.8892 -8.1017 -3.2985 31 1 3.3922 -9.0138 0.3635 32 1 4.5902 -7.6515 0.2722 33 1 2.6985 -3.7263 -0.7122 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157608974.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:26 Heat of formation + Delta-G solvation = 15.460057 kcal Electronic energy + Delta-G solvation = -16636.521177 eV Core-core repulsion = 13855.678613 eV Total energy + Delta-G solvation = -2780.842565 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.26045 -38.45676 -37.05825 -34.65991 -33.60250 -30.62612 -28.84177 -26.38477 -26.00337 -25.88638 -22.16191 -21.00563 -20.58957 -19.18936 -17.62739 -16.28604 -16.08507 -15.59486 -15.42558 -14.86941 -14.82837 -14.25029 -13.94937 -13.51877 -13.10630 -12.80865 -12.74566 -12.43046 -12.19152 -11.57573 -11.41282 -11.22302 -11.09337 -10.95882 -10.83840 -10.32098 -9.82751 -9.58067 -9.42138 -8.95017 -7.97933 -7.91256 -6.84680 -6.48403 -4.57105 1.67022 2.80220 3.02175 3.04131 3.06438 3.34810 3.70948 3.83243 3.88035 4.32997 4.57974 4.70369 4.77556 5.07856 5.21995 5.30585 5.42381 5.60108 5.73283 5.78060 5.98191 6.06920 6.16937 6.74809 6.88521 6.93465 6.99853 7.25926 7.28227 7.54400 7.81705 8.03287 8.08525 8.42913 8.68818 8.82134 8.89176 9.76540 10.10358 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031910 B = 0.004548 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.264363 B = 6154.838508 C = 6858.179986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.080 3.920 3 Si 0.910 3.090 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.156 3.844 10 C -0.245 4.245 11 C 0.116 3.884 12 N -0.624 5.624 13 C 0.396 3.604 14 N -0.745 5.745 15 C 0.156 3.844 16 C -0.110 4.110 17 C -0.184 4.184 18 C 0.359 3.641 19 O -0.432 6.432 20 C -0.188 4.188 21 C -0.336 4.336 22 H 0.283 0.717 23 H 0.122 0.878 24 H 0.118 0.882 25 H 0.390 0.610 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 -7.391 -2.292 9.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.140 4.140 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.148 3.852 10 C -0.269 4.269 11 C -0.034 4.034 12 N -0.348 5.348 13 C 0.166 3.834 14 N -0.382 5.382 15 C 0.031 3.969 16 C -0.129 4.129 17 C -0.222 4.222 18 C 0.234 3.766 19 O -0.303 6.303 20 C -0.226 4.226 21 C -0.363 4.363 22 H 0.094 0.906 23 H 0.140 0.860 24 H 0.135 0.865 25 H 0.223 0.777 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.140 0.860 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.167 -8.478 -2.262 10.183 hybrid contribution 0.427 1.439 -0.192 1.514 sum 5.594 -7.038 -2.454 9.319 Atomic orbital electron populations 1.69794 1.07703 1.29515 1.33891 1.25955 0.94726 1.01423 0.91918 0.86338 0.80159 0.80005 0.80058 1.18927 1.20237 1.18713 1.19550 0.97763 0.90896 1.40673 0.90313 1.17594 0.89852 0.91646 0.86132 1.21778 1.01577 0.98072 1.05495 1.21357 0.97310 0.87906 0.96800 1.66740 1.16515 1.29896 1.21644 1.17931 0.90085 0.84555 0.90849 1.44047 1.30743 1.05530 1.57872 1.20964 0.88522 0.92782 0.94656 1.22318 0.97056 0.97408 0.96131 1.24021 0.98636 0.98906 1.00657 1.25588 0.72320 0.85201 0.93533 1.90418 1.31867 1.24573 1.83481 1.24099 0.99195 1.00407 0.98849 1.21123 1.07626 0.92231 1.15323 0.90646 0.85977 0.86461 0.77687 0.92320 0.92148 0.87865 0.85981 0.88884 0.89067 0.86088 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.77 10.92 55.55 0.61 -19.17 16 2 C 0.08 1.94 5.20 -17.35 -0.09 1.85 16 3 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.88 9.12 -37.65 -0.34 -12.22 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.53 16 9 C 0.16 4.13 5.60 -106.56 -0.60 3.54 16 10 C -0.24 -6.36 8.74 -39.07 -0.34 -6.70 16 11 C 0.12 2.80 11.10 -18.04 -0.20 2.60 16 12 N -0.62 -15.05 10.37 -12.82 -0.13 -15.18 16 13 C 0.40 9.00 7.65 -154.97 -1.19 7.82 16 14 N -0.74 -12.88 5.73 -60.47 -0.35 -13.23 16 15 C 0.16 2.08 4.76 -4.04 -0.02 2.06 16 16 C -0.11 -1.07 3.81 -90.08 -0.34 -1.41 16 17 C -0.18 -1.54 7.53 -27.40 -0.21 -1.75 16 18 C 0.36 3.73 9.21 -28.35 -0.26 3.47 16 19 O -0.43 -6.00 17.99 6.00 0.11 -5.89 16 20 C -0.19 -1.72 7.50 -27.56 -0.21 -1.93 16 21 C -0.34 -8.15 9.12 -38.44 -0.35 -8.50 16 22 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 23 H 0.12 3.22 6.20 -52.49 -0.33 2.90 16 24 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 25 H 0.39 6.18 8.60 -40.82 -0.35 5.83 16 26 H 0.06 0.79 7.62 -51.93 -0.40 0.39 16 27 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.12 0.88 8.10 -51.93 -0.42 0.46 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.12 1.04 7.89 -51.93 -0.41 0.63 16 33 H 0.10 2.17 6.71 -52.48 -0.35 1.82 16 LS Contribution 286.99 15.07 4.32 4.32 Total: -1.00 -29.84 286.99 -8.52 -38.36 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -3.91 Total: 8.94 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -4.15 Total: -11.16 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.13 Total: -47.58 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: 0.11 Total: -5.89 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.84 -8.52 -38.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157608974.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.824 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds