Wall clock time and date at job start Sun Mar 29 2020 22:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86801 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47085 * 240.00144 * 3 2 1 5 5 H 1.48500 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47213 * 119.99718 * 3 2 1 7 7 C 1.40023 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00054 * 163.17454 * 7 2 1 9 9 C 1.41556 * 120.00230 * 343.17344 * 7 2 1 10 10 C 1.41184 * 120.98960 * 336.09502 * 9 7 2 11 11 C 1.36563 * 119.14961 * 180.02562 * 10 9 7 12 12 N 1.32096 * 121.26091 * 359.73147 * 11 10 9 13 13 C 1.32535 * 122.21915 * 0.56204 * 12 11 10 14 14 N 1.39082 * 119.65808 * 179.70717 * 13 12 11 15 15 C 1.46494 * 119.99968 * 179.73289 * 14 13 12 16 16 C 1.53001 * 109.47336 * 180.02562 * 15 14 13 17 17 C 1.53674 * 113.82969 * 175.00158 * 16 15 14 18 18 C 1.51405 * 87.41079 * 139.85003 * 17 16 15 19 19 O 1.20761 * 136.31440 * 153.99345 * 18 17 16 20 20 C 1.51399 * 87.36767 * 334.24969 * 18 17 16 21 21 C 1.38745 * 120.68486 * 359.44323 * 13 12 11 22 22 H 0.97005 * 120.00130 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.43137 * 0.02562 * 10 9 7 24 24 H 1.07997 * 119.37090 * 180.02562 * 11 10 9 25 25 H 0.96995 * 120.00060 * 359.73233 * 14 13 12 26 26 H 1.09004 * 109.47222 * 60.00448 * 15 14 13 27 27 H 1.09003 * 109.47707 * 300.00237 * 15 14 13 28 28 H 1.08996 * 113.00650 * 43.14170 * 16 15 14 29 29 H 1.09000 * 113.56004 * 25.21199 * 17 16 15 30 30 H 1.09001 * 113.55776 * 254.48676 * 17 16 15 31 31 H 1.09001 * 113.56057 * 140.38377 * 20 18 17 32 32 H 1.08999 * 113.56590 * 271.11939 * 20 18 17 33 33 H 1.08003 * 120.66653 * 180.29350 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0075 -1.2126 0.0005 8 1 3.0528 -1.2328 -0.2702 9 6 1.3452 -2.4122 0.3559 10 6 0.1903 -2.3918 1.1678 11 6 -0.4185 -3.5716 1.4881 12 7 0.0498 -4.7260 1.0488 13 6 1.1326 -4.8061 0.2888 14 7 1.5825 -6.0507 -0.1390 15 6 2.7752 -6.1475 -0.9842 16 6 3.0509 -7.6166 -1.3109 17 6 4.2127 -7.8264 -2.2947 18 6 4.6269 -9.0100 -1.4462 19 8 5.2312 -10.0408 -1.6209 20 6 3.9396 -8.3275 -0.2826 21 6 1.8189 -3.6610 -0.0889 22 1 -0.4850 0.8401 0.0004 23 1 -0.2067 -1.4554 1.5309 24 1 -1.3024 -3.5601 2.1085 25 1 1.1067 -6.8545 0.1221 26 1 3.6303 -5.7259 -0.4557 27 1 2.6111 -5.5946 -1.9091 28 1 2.1494 -8.1720 -1.5694 29 1 4.9383 -7.0130 -2.2918 30 1 3.8892 -8.1017 -3.2985 31 1 3.3922 -9.0138 0.3635 32 1 4.5902 -7.6515 0.2722 33 1 2.6985 -3.7263 -0.7122 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157608974.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:26 Heat of formation + Delta-G solvation = -2.460946 kcal Electronic energy + Delta-G solvation = -16637.298290 eV Core-core repulsion = 13855.678613 eV Total energy + Delta-G solvation = -2781.619678 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14288 -40.20159 -38.10538 -36.27928 -35.23558 -32.51370 -30.43752 -27.79072 -27.53155 -26.92951 -23.63772 -22.73318 -21.99051 -20.04732 -19.36263 -17.79195 -17.09418 -16.84798 -16.59277 -16.31605 -16.23330 -15.73345 -15.39484 -15.01352 -14.65821 -14.26949 -14.12646 -13.64589 -13.43627 -13.09391 -12.86192 -12.70502 -12.48939 -12.01309 -11.98335 -11.86428 -11.66500 -11.20533 -10.56777 -10.38834 -9.89319 -9.80106 -8.67194 -8.18013 -6.51891 0.85248 1.01482 1.22960 1.41377 1.53060 1.64386 2.21131 2.56051 2.84404 2.92655 3.43008 3.79605 3.87261 3.93981 4.23278 4.28453 4.33434 4.64268 4.71643 4.81168 4.88069 4.95647 4.98307 5.05070 5.09392 5.19125 5.29869 5.35430 5.65560 5.94813 6.15449 6.44012 6.47876 6.60242 6.89924 6.95991 7.10912 7.92876 8.29944 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031910 B = 0.004548 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.264363 B = 6154.838508 C = 6858.179986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.040 3.960 3 Si 0.986 3.014 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.490 4.490 8 H 0.081 0.919 9 C 0.127 3.873 10 C -0.272 4.272 11 C 0.115 3.885 12 N -0.636 5.636 13 C 0.397 3.603 14 N -0.732 5.732 15 C 0.153 3.847 16 C -0.101 4.101 17 C -0.171 4.171 18 C 0.361 3.639 19 O -0.471 6.471 20 C -0.184 4.184 21 C -0.354 4.354 22 H 0.291 0.709 23 H 0.109 0.891 24 H 0.142 0.858 25 H 0.399 0.601 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.115 -7.347 -2.775 9.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.178 4.178 3 Si 0.806 3.194 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.521 4.521 8 H 0.099 0.901 9 C 0.119 3.881 10 C -0.297 4.297 11 C -0.034 4.034 12 N -0.360 5.360 13 C 0.164 3.836 14 N -0.368 5.368 15 C 0.029 3.971 16 C -0.120 4.120 17 C -0.209 4.209 18 C 0.238 3.762 19 O -0.346 6.346 20 C -0.221 4.221 21 C -0.381 4.381 22 H 0.102 0.898 23 H 0.127 0.873 24 H 0.159 0.841 25 H 0.234 0.766 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.157 0.843 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.148 0.852 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.936 -8.476 -2.764 10.710 hybrid contribution 0.159 1.343 -0.050 1.353 sum 6.095 -7.133 -2.813 9.795 Atomic orbital electron populations 1.69847 1.09213 1.30967 1.33882 1.26842 0.95474 1.04680 0.90779 0.85201 0.78774 0.75252 0.80189 1.18127 1.19151 1.18411 1.19855 0.98151 0.91960 1.42090 0.90068 1.18013 0.90482 0.92960 0.86673 1.21748 1.02605 0.98208 1.07118 1.21720 0.97694 0.87593 0.96432 1.66893 1.17206 1.29548 1.22360 1.18219 0.89310 0.86220 0.89812 1.44167 1.31448 1.03946 1.57229 1.21161 0.86919 0.95337 0.93712 1.22184 0.97918 0.94905 0.97001 1.24006 0.97989 0.98172 1.00726 1.25849 0.71056 0.84701 0.94554 1.90411 1.33771 1.26203 1.84196 1.24131 0.98995 1.00312 0.98687 1.21270 1.08505 0.92199 1.16157 0.89825 0.87278 0.84105 0.76639 0.92028 0.92549 0.87031 0.84321 0.87578 0.88576 0.85197 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.50 10.92 21.84 0.24 -41.26 16 2 C 0.04 1.93 5.20 85.29 0.44 2.37 16 3 Si 0.99 36.53 29.59 68.60 2.03 38.56 16 4 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 5 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 6 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 7 C -0.49 -25.79 9.12 23.52 0.21 -25.57 16 8 H 0.08 4.06 7.90 -2.91 -0.02 4.04 16 9 C 0.13 6.84 5.60 -21.12 -0.12 6.72 16 10 C -0.27 -14.44 8.74 22.60 0.20 -14.24 16 11 C 0.12 5.61 11.10 84.26 0.94 6.54 16 12 N -0.64 -30.27 10.37 -194.46 -2.02 -32.28 16 13 C 0.40 17.74 7.65 132.90 1.02 18.76 16 14 N -0.73 -24.03 5.73 -345.24 -1.98 -26.01 16 15 C 0.15 3.75 4.76 86.38 0.41 4.16 16 16 C -0.10 -1.68 3.81 -10.44 -0.04 -1.72 16 17 C -0.17 -2.38 7.53 30.16 0.23 -2.15 16 18 C 0.36 6.80 9.21 29.54 0.27 7.08 16 19 O -0.47 -12.64 17.99 -1.45 -0.03 -12.66 16 20 C -0.18 -2.93 7.50 30.06 0.23 -2.70 16 21 C -0.35 -17.20 9.12 23.01 0.21 -16.99 16 22 H 0.29 13.33 8.29 -92.70 -0.77 12.57 16 23 H 0.11 5.96 6.20 -2.91 -0.02 5.94 16 24 H 0.14 5.96 8.06 -2.91 -0.02 5.94 16 25 H 0.40 11.79 8.60 -92.71 -0.80 10.99 16 26 H 0.06 1.52 7.62 -2.38 -0.02 1.50 16 27 H 0.06 1.47 7.93 -2.39 -0.02 1.45 16 28 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.14 1.54 8.10 -2.39 -0.02 1.52 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.13 1.90 7.89 -2.39 -0.02 1.89 16 33 H 0.11 4.84 6.71 -2.91 -0.02 4.82 16 Total: -1.00 -64.74 286.99 2.58 -62.16 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.34 Total: 29.26 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 3.99 Total: -17.75 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -3.76 Total: -99.56 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.03 Total: -12.66 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Total: -64.74 2.58 -62.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157608974.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.695 kcal (2) G-P(sol) polarization free energy of solvation -64.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds