Wall clock time and date at job start Sun Mar 29 2020 22:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00310 * 2 1 4 4 H 1.48494 * 109.47221 * 270.00295 * 3 2 1 5 5 H 1.48506 * 109.46675 * 30.00037 * 3 2 1 6 6 H 1.48497 * 109.47624 * 149.99806 * 3 2 1 7 7 C 1.37879 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99646 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00377 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47162 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.46979 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47322 * 179.97438 * 11 10 9 13 13 C 1.39121 * 120.00469 * 179.97438 * 12 11 10 14 14 C 1.39467 * 119.50997 * 0.02562 * 13 12 11 15 15 C 1.38095 * 119.63107 * 179.97438 * 14 13 12 16 16 C 1.39240 * 118.43662 * 359.97438 * 15 14 13 17 17 O 1.34806 * 133.53189 * 179.97438 * 16 15 14 18 18 C 1.34345 * 110.79594 * 180.02562 * 17 16 15 19 19 C 1.34135 * 110.10186 * 0.04461 * 18 17 16 20 20 C 1.40355 * 118.97523 * 0.02562 * 16 15 14 21 21 N 1.32125 * 119.51255 * 180.02562 * 13 12 11 22 22 H 0.96996 * 119.99975 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46944 * 60.00443 * 9 7 2 24 24 H 1.08999 * 109.46811 * 300.00020 * 9 7 2 25 25 H 1.08990 * 109.47195 * 59.99967 * 10 9 7 26 26 H 1.09002 * 109.46730 * 300.00018 * 10 9 7 27 27 H 1.09006 * 109.47670 * 59.99779 * 11 10 9 28 28 H 1.08999 * 109.47449 * 300.00286 * 11 10 9 29 29 H 0.97003 * 120.00027 * 359.97438 * 12 11 10 30 30 H 1.07999 * 120.19075 * 359.97438 * 14 13 12 31 31 H 1.07993 * 120.78410 * 179.72537 * 15 14 13 32 32 H 1.07999 * 124.95075 * 179.97438 * 18 17 16 33 33 H 1.07999 * 126.86386 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 6 5.5515 -2.6366 -0.0022 12 7 6.0399 -4.0178 -0.0027 13 6 7.4077 -4.2721 -0.0033 14 6 8.3049 -3.2043 -0.0029 15 6 9.6631 -3.4538 -0.0029 16 6 10.0940 -4.7779 -0.0029 17 8 11.3107 -5.3583 -0.0033 18 6 11.2004 -6.6972 -0.0035 19 6 9.9072 -7.0533 -0.0042 20 6 9.1368 -5.8044 -0.0033 21 7 7.8374 -5.5215 -0.0043 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8745 -0.6800 -0.8911 25 1 3.6579 -3.1498 -0.8924 26 1 3.6585 -3.1510 0.8875 27 1 5.9149 -2.1235 0.8882 28 1 5.9149 -2.1220 -0.8917 29 1 5.4096 -4.7551 -0.0026 30 1 7.9396 -2.1880 -0.0025 31 1 10.3744 -2.6412 -0.0070 32 1 12.0318 -7.3865 -0.0043 33 1 9.5119 -8.0583 -0.0042 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157640894.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:58 Heat of formation + Delta-G solvation = 13.842858 kcal Electronic energy + Delta-G solvation = -16348.851211 eV Core-core repulsion = 13567.938519 eV Total energy + Delta-G solvation = -2780.912692 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.40963 -40.28793 -37.39024 -35.33144 -34.02798 -33.51915 -32.01663 -30.01874 -28.32572 -25.01279 -24.68183 -22.94531 -22.25416 -21.96252 -19.08580 -18.76744 -18.59760 -17.78761 -17.19206 -16.47475 -16.38072 -15.94133 -14.95286 -14.84686 -14.82220 -14.61374 -14.27692 -13.82123 -13.76320 -13.65008 -13.56563 -12.73015 -12.64752 -11.85591 -11.70799 -11.64430 -11.47469 -11.32004 -10.90462 -10.74813 -10.42038 -9.61685 -8.60385 -8.27870 -6.33015 -0.11990 0.37675 1.39893 1.41608 1.41998 1.53718 1.81391 2.16604 2.38855 2.82913 3.08104 3.31915 3.63211 3.85833 4.04796 4.22775 4.22906 4.25328 4.42749 4.56268 4.79477 4.82697 4.91012 4.92192 4.96815 5.03535 5.29730 5.37729 5.47991 5.58388 5.66360 5.94534 6.11600 6.29196 6.57255 6.76041 7.13841 7.31867 8.89177 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.061538 B = 0.003543 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.893784 B = 7900.755147 C = 8329.901471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.536 4.536 8 H 0.028 0.972 9 C -0.008 4.008 10 C -0.104 4.104 11 C 0.135 3.865 12 N -0.722 5.722 13 C 0.393 3.607 14 C -0.214 4.214 15 C -0.011 4.011 16 C -0.084 4.084 17 O -0.197 6.197 18 C 0.054 3.946 19 C -0.242 4.242 20 C 0.095 3.905 21 N -0.557 5.557 22 H 0.266 0.734 23 H 0.029 0.971 24 H 0.027 0.973 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.403 0.597 30 H 0.167 0.833 31 H 0.175 0.825 32 H 0.265 0.735 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.135 -8.817 0.015 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.160 1.160 7 C -0.574 4.574 8 H 0.046 0.954 9 C -0.046 4.046 10 C -0.142 4.142 11 C 0.012 3.988 12 N -0.355 5.355 13 C 0.152 3.848 14 C -0.238 4.238 15 C -0.037 4.037 16 C -0.135 4.135 17 O -0.096 6.096 18 C -0.013 4.013 19 C -0.263 4.263 20 C -0.036 4.036 21 N -0.278 5.278 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.238 0.762 30 H 0.184 0.816 31 H 0.192 0.808 32 H 0.280 0.720 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 25.621 -9.026 0.016 27.165 hybrid contribution -0.621 0.643 -0.023 0.894 sum 25.000 -8.383 -0.007 26.368 Atomic orbital electron populations 1.70085 1.08579 1.28225 1.52744 1.26114 0.95650 1.03917 0.94045 0.85585 0.79722 0.77627 0.79275 1.19107 1.21448 1.16017 1.21524 0.92413 0.93013 1.50462 0.95362 1.19443 0.93602 0.94161 0.97373 1.21466 0.93011 0.98315 1.01421 1.21512 0.94001 0.81080 1.02240 1.44711 1.02057 1.08764 1.79962 1.18543 0.86416 0.88586 0.91274 1.21575 0.91940 1.00386 1.09923 1.20514 0.95489 0.92673 0.95007 1.20394 0.84074 0.95940 1.13061 1.83967 1.28348 1.20826 1.76496 1.25034 0.99162 0.80829 0.96228 1.22601 0.92461 0.97557 1.13648 1.20968 0.88308 0.95280 0.99036 1.66417 1.16636 1.21080 1.23696 0.92549 0.95277 0.95418 0.92743 0.92759 0.90799 0.90729 0.76186 0.81593 0.80780 0.71972 0.80793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.03 13.96 21.45 0.30 -59.73 16 2 C 0.00 -0.06 5.47 84.66 0.46 0.41 16 3 Si 0.96 42.88 27.47 68.60 1.88 44.77 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 7 C -0.54 -30.41 9.66 25.60 0.25 -30.16 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 9 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 10 C -0.10 -3.73 5.27 30.59 0.16 -3.57 16 11 C 0.14 3.75 4.88 86.38 0.42 4.17 16 12 N -0.72 -20.54 5.73 -344.89 -1.98 -22.51 16 13 C 0.39 11.47 7.64 133.18 1.02 12.49 16 14 C -0.21 -5.05 9.31 22.53 0.21 -4.84 16 15 C -0.01 -0.23 10.18 22.48 0.23 0.00 16 16 C -0.08 -2.07 7.42 23.03 0.17 -1.89 16 17 O -0.20 -3.93 10.58 -7.88 -0.08 -4.02 16 18 C 0.05 0.73 11.96 66.88 0.80 1.53 16 19 C -0.24 -4.80 11.14 23.56 0.26 -4.54 16 20 C 0.10 2.66 7.54 41.71 0.31 2.98 16 21 N -0.56 -17.73 10.45 -182.50 -1.91 -19.64 16 22 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 23 H 0.03 1.21 7.20 -2.39 -0.02 1.20 16 24 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.07 1.88 7.92 -2.38 -0.02 1.86 16 28 H 0.07 1.89 7.92 -2.39 -0.02 1.87 16 29 H 0.40 11.61 8.60 -92.71 -0.80 10.82 16 30 H 0.17 3.14 6.67 -2.91 -0.02 3.12 16 31 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 32 H 0.26 0.38 8.06 -2.91 -0.02 0.35 16 33 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -73.53 286.07 2.91 -70.62 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.27 Total: 14.16 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 4.42 Total: -23.65 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -3.58 Total: -101.88 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.08 Total: -4.02 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.77 kcal Total: -73.53 2.91 -70.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157640894.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.466 kcal (2) G-P(sol) polarization free energy of solvation -73.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds