Wall clock time and date at job start Sun Mar 29 2020 23:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33661 * 1 3 3 N 1.39889 * 120.00174 * 2 1 4 4 C 1.47436 * 119.99881 * 180.02562 * 2 1 3 5 5 O 1.21638 * 120.00031 * 28.52898 * 4 2 1 6 6 N 1.34772 * 120.00108 * 208.53494 * 4 2 1 7 7 C 1.36817 * 119.99619 * 356.05134 * 6 4 2 8 8 H 1.07995 * 119.99839 * 39.93846 * 7 6 4 9 9 C 1.39074 * 119.99648 * 219.93163 * 7 6 4 10 10 N 1.31350 * 120.00186 * 16.92836 * 9 7 6 11 11 Si 1.86800 * 119.99629 * 196.92642 * 9 7 6 12 12 H 1.48506 * 109.47032 * 90.00615 * 11 9 7 13 13 H 1.48497 * 109.46940 * 209.99994 * 11 9 7 14 14 H 1.48503 * 109.47449 * 330.00448 * 11 9 7 15 15 C 1.46497 * 120.00404 * 176.05396 * 6 4 2 16 16 C 1.50702 * 109.47171 * 274.61110 * 15 6 4 17 17 C 1.38239 * 119.99914 * 95.35024 * 16 15 6 18 18 C 1.38232 * 119.99858 * 179.97438 * 17 16 15 19 19 C 1.38239 * 119.99991 * 359.97438 * 18 17 16 20 20 C 1.38236 * 120.00045 * 0.27617 * 19 18 17 21 21 C 1.38232 * 119.99786 * 275.33497 * 16 15 6 22 22 H 1.07995 * 120.00112 * 180.02562 * 1 2 3 23 23 H 1.08005 * 119.99669 * 359.97438 * 1 2 3 24 24 H 0.97001 * 120.00033 * 194.19187 * 3 2 1 25 25 H 0.97006 * 119.99882 * 14.19322 * 3 2 1 26 26 H 0.96999 * 119.99924 * 179.97438 * 10 9 7 27 27 H 1.08996 * 109.47166 * 154.60865 * 15 6 4 28 28 H 1.09007 * 109.47039 * 34.60894 * 15 6 4 29 29 H 1.07998 * 120.00383 * 359.97438 * 17 16 15 30 30 H 1.07998 * 120.00164 * 180.02562 * 18 17 16 31 31 H 1.08000 * 120.00102 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.00314 * 179.72646 * 20 19 18 33 33 H 1.07995 * 120.00119 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3366 0.0000 0.0000 3 7 2.0361 1.2115 0.0000 4 6 2.0738 -1.2768 -0.0006 5 8 1.5763 -2.2661 -0.5041 6 7 3.2987 -1.3480 0.5569 7 6 3.8920 -0.2186 1.0511 8 1 3.3031 0.5094 1.5891 9 6 5.2535 -0.0082 0.8605 10 7 5.9024 -0.6931 -0.0533 11 14 6.1593 1.2487 1.9043 12 1 6.6851 0.5900 3.1270 13 1 7.2876 1.8184 1.1249 14 1 5.2253 2.3366 2.2908 15 6 3.9949 -2.6347 0.6338 16 6 3.5555 -3.3704 1.8735 17 6 2.5408 -4.3061 1.7987 18 6 2.1381 -4.9813 2.9357 19 6 2.7505 -4.7211 4.1474 20 6 3.7617 -3.7817 4.2232 21 6 4.1674 -3.1097 3.0853 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9354 0.0004 24 1 2.9839 1.2243 -0.2060 25 1 1.5733 2.0387 0.2060 26 1 6.8519 -0.5460 -0.1864 27 1 5.0706 -2.4638 0.6748 28 1 3.7550 -3.2308 -0.2467 29 1 2.0626 -4.5097 0.8520 30 1 1.3456 -5.7127 2.8773 31 1 2.4362 -5.2490 5.0357 32 1 4.2372 -3.5752 5.1706 33 1 4.9607 -2.3791 3.1435 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160670079.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:35 Heat of formation + Delta-G solvation = 21.927516 kcal Electronic energy + Delta-G solvation = -17900.948746 eV Core-core repulsion = 15120.386632 eV Total energy + Delta-G solvation = -2780.562115 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.22015 -38.11479 -35.01004 -34.64605 -31.98265 -30.65808 -30.28598 -28.34905 -26.02154 -24.87493 -21.92739 -21.90075 -20.28226 -18.81852 -17.41742 -16.37489 -15.80550 -15.33932 -14.90248 -14.58291 -14.32225 -14.23463 -13.78476 -13.15792 -12.80918 -12.47626 -12.26753 -12.07729 -11.62607 -11.36343 -11.33018 -11.04204 -10.84191 -10.65525 -10.47999 -10.27329 -10.05651 -9.29246 -8.68255 -8.33171 -8.10940 -7.68696 -6.83667 -6.50038 -4.23516 1.93112 1.99733 2.71546 3.04621 3.12468 3.13413 3.95559 4.25769 4.38161 4.72063 4.83928 5.21720 5.42682 5.47310 5.57954 5.85825 6.05375 6.11452 6.18483 6.42883 6.60552 6.66129 6.74595 7.03208 7.04603 7.10487 7.11871 7.18861 7.32523 7.43576 7.61781 7.80534 8.19820 8.46983 8.81871 8.94195 9.37130 9.79162 10.49297 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.011205 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.835832 B = 2498.327585 C = 3589.756573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C 0.166 3.834 3 N -0.871 5.871 4 C 0.507 3.493 5 O -0.588 6.588 6 N -0.424 5.424 7 C -0.343 4.343 8 H 0.103 0.897 9 C 0.042 3.958 10 N -0.856 5.856 11 Si 0.913 3.087 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.146 3.854 16 C -0.081 4.081 17 C -0.103 4.103 18 C -0.132 4.132 19 C -0.134 4.134 20 C -0.133 4.133 21 C -0.097 4.097 22 H 0.104 0.896 23 H 0.091 0.909 24 H 0.411 0.589 25 H 0.379 0.621 26 H 0.272 0.728 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 -0.881 5.394 5.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.356 4.356 2 C 0.059 3.941 3 N -0.418 5.418 4 C 0.295 3.705 5 O -0.473 6.473 6 N -0.141 5.141 7 C -0.471 4.471 8 H 0.120 0.880 9 C -0.165 4.165 10 N -0.492 5.492 11 Si 0.739 3.261 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.192 1.192 15 C 0.023 3.977 16 C -0.082 4.082 17 C -0.121 4.121 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.151 4.151 21 C -0.116 4.116 22 H 0.122 0.878 23 H 0.109 0.891 24 H 0.247 0.753 25 H 0.206 0.794 26 H 0.083 0.917 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.142 0.858 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.319 -1.493 5.035 5.415 hybrid contribution 0.690 1.056 0.692 1.439 sum -0.629 -0.437 5.727 5.778 Atomic orbital electron populations 1.23326 0.92931 1.01245 1.18131 1.19657 0.92127 0.86467 0.95869 1.43231 1.13776 1.04705 1.80070 1.18496 0.83588 0.87721 0.80661 1.90631 1.69891 1.37448 1.49308 1.43277 1.13890 1.06603 1.50344 1.19772 0.92978 0.99654 1.34727 0.87961 1.25481 0.97586 0.98031 0.95413 1.69867 1.10404 1.40666 1.28236 0.86147 0.79329 0.80643 0.79963 1.20071 1.20854 1.19184 1.20423 1.00376 0.84280 0.92579 1.20627 0.95459 0.95467 0.96677 1.21262 0.96288 0.95925 0.98641 1.21053 1.00238 1.00587 0.93107 1.20975 0.97702 0.99250 0.97312 1.21052 0.98272 0.97659 0.98086 1.21112 0.99881 0.98465 0.92102 0.87755 0.89101 0.75321 0.79427 0.91716 0.86856 0.91710 0.85835 0.86913 0.87093 0.86925 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.13 14.12 29.13 0.41 -5.71 16 2 C 0.17 3.63 6.39 -82.04 -0.52 3.10 16 3 N -0.87 -16.58 7.38 33.30 0.25 -16.33 16 4 C 0.51 12.62 7.43 -12.52 -0.09 12.53 16 5 O -0.59 -15.67 15.98 5.24 0.08 -15.59 16 6 N -0.42 -10.32 2.49 -117.32 -0.29 -10.62 16 7 C -0.34 -8.08 6.44 -15.02 -0.10 -8.18 16 8 H 0.10 2.38 6.33 -52.49 -0.33 2.05 16 9 C 0.04 0.97 5.00 -17.45 -0.09 0.88 16 10 N -0.86 -20.97 11.42 55.50 0.63 -20.34 16 11 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 12 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 13 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 14 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 15 C 0.15 3.42 5.05 -5.19 -0.03 3.40 16 16 C -0.08 -1.71 5.43 -104.62 -0.57 -2.28 16 17 C -0.10 -2.04 9.68 -39.58 -0.38 -2.42 16 18 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 19 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 20 C -0.13 -2.24 10.05 -39.58 -0.40 -2.63 16 21 C -0.10 -1.90 9.72 -39.58 -0.38 -2.28 16 22 H 0.10 2.16 7.78 -52.49 -0.41 1.75 16 23 H 0.09 1.56 8.06 -52.48 -0.42 1.13 16 24 H 0.41 8.38 6.47 -40.82 -0.26 8.11 16 25 H 0.38 5.96 8.85 -40.82 -0.36 5.59 16 26 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 27 H 0.11 2.75 5.57 -51.93 -0.29 2.46 16 28 H 0.06 1.57 7.42 -51.93 -0.39 1.19 16 29 H 0.12 2.53 7.83 -52.49 -0.41 2.12 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 286.44 15.07 4.32 4.32 Total: -1.00 -27.00 286.44 -6.69 -33.69 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -3.70 Total: 20.56 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.95 Total: -8.77 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.59 Total: -47.29 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.08 Total: -15.59 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.00 -6.69 -33.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160670079.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.613 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds