Wall clock time and date at job start Sun Mar 29 2020 23:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33661 * 1 3 3 N 1.39889 * 120.00174 * 2 1 4 4 C 1.47436 * 119.99881 * 180.02562 * 2 1 3 5 5 O 1.21638 * 120.00031 * 28.52898 * 4 2 1 6 6 N 1.34772 * 120.00108 * 208.53494 * 4 2 1 7 7 C 1.36817 * 119.99619 * 356.05134 * 6 4 2 8 8 H 1.07995 * 119.99839 * 39.93846 * 7 6 4 9 9 C 1.39074 * 119.99648 * 219.93163 * 7 6 4 10 10 N 1.31350 * 120.00186 * 16.92836 * 9 7 6 11 11 Si 1.86800 * 119.99629 * 196.92642 * 9 7 6 12 12 H 1.48506 * 109.47032 * 90.00615 * 11 9 7 13 13 H 1.48497 * 109.46940 * 209.99994 * 11 9 7 14 14 H 1.48503 * 109.47449 * 330.00448 * 11 9 7 15 15 C 1.46497 * 120.00404 * 176.05396 * 6 4 2 16 16 C 1.50702 * 109.47171 * 274.61110 * 15 6 4 17 17 C 1.38239 * 119.99914 * 95.35024 * 16 15 6 18 18 C 1.38232 * 119.99858 * 179.97438 * 17 16 15 19 19 C 1.38239 * 119.99991 * 359.97438 * 18 17 16 20 20 C 1.38236 * 120.00045 * 0.27617 * 19 18 17 21 21 C 1.38232 * 119.99786 * 275.33497 * 16 15 6 22 22 H 1.07995 * 120.00112 * 180.02562 * 1 2 3 23 23 H 1.08005 * 119.99669 * 359.97438 * 1 2 3 24 24 H 0.97001 * 120.00033 * 194.19187 * 3 2 1 25 25 H 0.97006 * 119.99882 * 14.19322 * 3 2 1 26 26 H 0.96999 * 119.99924 * 179.97438 * 10 9 7 27 27 H 1.08996 * 109.47166 * 154.60865 * 15 6 4 28 28 H 1.09007 * 109.47039 * 34.60894 * 15 6 4 29 29 H 1.07998 * 120.00383 * 359.97438 * 17 16 15 30 30 H 1.07998 * 120.00164 * 180.02562 * 18 17 16 31 31 H 1.08000 * 120.00102 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.00314 * 179.72646 * 20 19 18 33 33 H 1.07995 * 120.00119 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3366 0.0000 0.0000 3 7 2.0361 1.2115 0.0000 4 6 2.0738 -1.2768 -0.0006 5 8 1.5763 -2.2661 -0.5041 6 7 3.2987 -1.3480 0.5569 7 6 3.8920 -0.2186 1.0511 8 1 3.3031 0.5094 1.5891 9 6 5.2535 -0.0082 0.8605 10 7 5.9024 -0.6931 -0.0533 11 14 6.1593 1.2487 1.9043 12 1 6.6851 0.5900 3.1270 13 1 7.2876 1.8184 1.1249 14 1 5.2253 2.3366 2.2908 15 6 3.9949 -2.6347 0.6338 16 6 3.5555 -3.3704 1.8735 17 6 2.5408 -4.3061 1.7987 18 6 2.1381 -4.9813 2.9357 19 6 2.7505 -4.7211 4.1474 20 6 3.7617 -3.7817 4.2232 21 6 4.1674 -3.1097 3.0853 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9354 0.0004 24 1 2.9839 1.2243 -0.2060 25 1 1.5733 2.0387 0.2060 26 1 6.8519 -0.5460 -0.1864 27 1 5.0706 -2.4638 0.6748 28 1 3.7550 -3.2308 -0.2467 29 1 2.0626 -4.5097 0.8520 30 1 1.3456 -5.7127 2.8773 31 1 2.4362 -5.2490 5.0357 32 1 4.2372 -3.5752 5.1706 33 1 4.9607 -2.3791 3.1435 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160670079.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:35 Heat of formation + Delta-G solvation = 6.359110 kcal Electronic energy + Delta-G solvation = -17901.623843 eV Core-core repulsion = 15120.386632 eV Total energy + Delta-G solvation = -2781.237211 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.96287 -39.66914 -36.87376 -36.29205 -33.75951 -32.27743 -31.70766 -29.96239 -27.72887 -26.70784 -23.55542 -23.35628 -21.86810 -20.62803 -19.11510 -17.99975 -17.41146 -17.01100 -16.62224 -16.18764 -15.92122 -15.83027 -15.46870 -14.85204 -14.25405 -14.15735 -13.86651 -13.60317 -13.24654 -13.07356 -12.96845 -12.76742 -12.55808 -12.18446 -12.03621 -11.80115 -11.70406 -11.12471 -10.54054 -9.75948 -9.60101 -9.55589 -8.46024 -8.26677 -6.10644 0.48928 0.56455 0.98024 1.46936 1.49569 1.59007 2.27876 2.50423 2.77522 3.00732 3.17012 3.57003 4.03296 4.11798 4.22046 4.32620 4.36108 4.54542 4.72679 4.85340 5.08149 5.13123 5.21910 5.25820 5.44028 5.48362 5.62801 5.63827 5.64447 5.86308 5.97669 6.20045 6.36965 6.86423 7.05234 7.36819 7.50805 7.93299 8.69914 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.011205 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.835832 B = 2498.327585 C = 3589.756573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C 0.143 3.857 3 N -0.862 5.862 4 C 0.485 3.515 5 O -0.622 6.622 6 N -0.427 5.427 7 C -0.351 4.351 8 H 0.108 0.892 9 C 0.010 3.990 10 N -0.888 5.888 11 Si 0.979 3.021 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.255 1.255 15 C 0.152 3.848 16 C -0.105 4.105 17 C -0.123 4.123 18 C -0.128 4.128 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.113 4.113 22 H 0.092 0.908 23 H 0.126 0.874 24 H 0.406 0.594 25 H 0.397 0.603 26 H 0.274 0.726 27 H 0.100 0.900 28 H 0.038 0.962 29 H 0.103 0.897 30 H 0.142 0.858 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 -0.184 7.994 8.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.336 4.336 2 C 0.035 3.965 3 N -0.409 5.409 4 C 0.274 3.726 5 O -0.510 6.510 6 N -0.142 5.142 7 C -0.479 4.479 8 H 0.125 0.875 9 C -0.194 4.194 10 N -0.525 5.525 11 Si 0.802 3.198 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.178 1.178 15 C 0.029 3.971 16 C -0.106 4.106 17 C -0.142 4.142 18 C -0.146 4.146 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.131 4.131 22 H 0.111 0.889 23 H 0.144 0.856 24 H 0.239 0.761 25 H 0.227 0.773 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.056 0.944 29 H 0.121 0.879 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.858 -0.773 7.649 7.909 hybrid contribution 0.826 0.761 -0.112 1.129 sum -1.032 -0.012 7.537 7.607 Atomic orbital electron populations 1.23519 0.92234 1.02324 1.15524 1.19535 0.92629 0.86142 0.98150 1.42985 1.13339 1.04538 1.80034 1.19142 0.84085 0.88783 0.80561 1.90587 1.70701 1.38832 1.50831 1.43497 1.13876 1.07168 1.49701 1.19971 0.93395 0.99677 1.34845 0.87453 1.26204 0.97810 0.99542 0.95853 1.69975 1.10698 1.42200 1.29597 0.85140 0.78009 0.78577 0.78046 1.20042 1.21078 1.17831 1.20246 0.99470 0.84249 0.93130 1.20435 0.97152 0.96721 0.96268 1.21214 0.96706 0.97005 0.99280 1.21394 1.00547 1.00187 0.92442 1.21461 0.96166 0.98174 0.98173 1.21430 0.98048 0.96669 0.98237 1.21115 1.00109 0.99327 0.92597 0.88944 0.85591 0.76082 0.77276 0.91592 0.88266 0.94386 0.87865 0.83975 0.82712 0.83550 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -11.07 14.12 66.78 0.94 -10.13 16 2 C 0.14 6.21 6.39 39.24 0.25 6.46 16 3 N -0.86 -31.96 7.38 -48.57 -0.36 -32.32 16 4 C 0.48 24.98 7.43 86.67 0.64 25.62 16 5 O -0.62 -34.84 15.98 -4.15 -0.07 -34.90 16 6 N -0.43 -21.55 2.49 -643.34 -1.60 -23.15 16 7 C -0.35 -16.73 6.44 84.12 0.54 -16.19 16 8 H 0.11 4.95 6.33 -2.91 -0.02 4.93 16 9 C 0.01 0.47 5.00 84.97 0.43 0.90 16 10 N -0.89 -44.68 11.42 21.68 0.25 -44.43 16 11 Si 0.98 36.69 29.59 68.60 2.03 38.72 16 12 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 13 H -0.29 -10.75 7.11 99.48 0.71 -10.04 16 14 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 15 C 0.15 7.56 5.05 85.63 0.43 7.99 16 16 C -0.10 -4.57 5.43 -19.86 -0.11 -4.68 16 17 C -0.12 -5.01 9.68 22.27 0.22 -4.79 16 18 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 19 C -0.12 -3.41 10.05 22.27 0.22 -3.19 16 20 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 21 C -0.11 -4.38 9.72 22.27 0.22 -4.16 16 22 H 0.09 3.80 7.78 -2.91 -0.02 3.78 16 23 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 24 H 0.41 16.36 6.47 -92.71 -0.60 15.76 16 25 H 0.40 11.67 8.85 -92.70 -0.82 10.85 16 26 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 27 H 0.10 5.13 5.57 -2.39 -0.01 5.12 16 28 H 0.04 2.01 7.42 -2.38 -0.02 1.99 16 29 H 0.10 4.51 7.83 -2.91 -0.02 4.49 16 30 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 31 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -60.25 286.44 4.20 -56.05 By element: Atomic # 1 Polarization: 50.02 SS G_CDS: -0.28 Total: 49.74 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 4.23 Total: -9.70 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -1.72 Total: -99.91 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.07 Total: -34.90 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Total: -60.25 4.20 -56.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160670079.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.408 kcal (2) G-P(sol) polarization free energy of solvation -60.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds