Wall clock time and date at job start Sun Mar 29 2020 22:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47442 * 230.32131 * 3 2 1 5 5 C 1.52995 * 109.47119 * 180.02562 * 4 3 2 6 6 N 1.46505 * 109.47056 * 179.97438 * 5 4 3 7 7 C 1.39116 * 120.00301 * 179.97438 * 6 5 4 8 8 C 1.39168 * 119.63211 * 0.02562 * 7 6 5 9 9 C 1.38206 * 119.17585 * 179.97438 * 8 7 6 10 10 C 1.39455 * 118.44609 * 359.97438 * 9 8 7 11 11 O 1.35811 * 120.40316 * 179.97438 * 10 9 8 12 12 C 1.34813 * 117.00196 * 354.52705 * 11 10 9 13 13 H 1.08001 * 119.99895 * 5.06531 * 12 11 10 14 14 C 1.38628 * 120.00262 * 185.06131 * 12 11 10 15 15 N 1.31580 * 120.00142 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99798 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46880 * 89.99944 * 16 14 12 18 18 H 1.48493 * 109.46920 * 209.99665 * 16 14 12 19 19 H 1.48497 * 109.47113 * 329.99806 * 16 14 12 20 20 C 1.38669 * 119.19267 * 359.97438 * 10 9 8 21 21 N 1.31936 * 120.75669 * 0.02793 * 20 10 9 22 22 H 4.44650 * 5.63385 * 180.02562 * 4 1 2 23 23 H 1.08998 * 109.46811 * 110.32169 * 3 2 1 24 24 H 1.09002 * 109.47339 * 350.32829 * 3 2 1 25 25 H 1.09000 * 109.46756 * 59.99791 * 4 3 2 26 26 H 1.08998 * 109.46715 * 300.00812 * 4 3 2 27 27 H 1.09001 * 109.46898 * 60.00830 * 5 4 3 28 28 H 1.08996 * 109.47397 * 300.00075 * 5 4 3 29 29 H 0.97007 * 119.99954 * 0.02562 * 6 5 4 30 30 H 1.08001 * 120.41202 * 0.02562 * 8 7 6 31 31 H 1.08000 * 120.77675 * 179.72178 * 9 8 7 32 32 H 0.96997 * 120.00045 * 180.02562 * 15 14 12 33 33 H 1.07994 * 119.62016 * 179.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.9219 1.1102 5 6 4.6856 0.9230 1.1097 6 7 5.1737 1.8056 2.1724 7 6 6.5413 1.9686 2.3679 8 6 7.4392 1.2900 1.5493 9 6 8.7958 1.4592 1.7516 10 6 9.2139 2.3097 2.7747 11 8 10.5374 2.5046 3.0088 12 6 11.4021 1.7596 2.2912 13 1 11.0356 1.1071 1.5125 14 6 12.7616 1.8311 2.5528 15 7 13.6055 1.1044 1.8522 16 14 13.3953 2.9593 3.9001 17 1 13.4392 2.2182 5.1863 18 1 14.7608 3.4276 3.5519 19 1 12.4899 4.1287 4.0332 20 6 8.2618 2.9538 3.5502 21 7 6.9742 2.7691 3.3293 22 1 -1.0501 -0.0003 0.0000 23 1 3.0091 0.3577 -0.9637 24 1 3.0099 -1.0122 0.1727 25 1 2.7925 0.5648 2.0739 26 1 2.7918 1.9347 0.9374 27 1 5.0484 1.2804 0.1460 28 1 5.0498 -0.0897 1.2822 29 1 4.5431 2.2758 2.7401 30 1 7.0803 0.6398 0.7652 31 1 9.5154 0.9418 1.1344 32 1 14.5567 1.1542 2.0355 33 1 8.5778 3.6136 4.3447 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162445383.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:13 Heat of formation + Delta-G solvation = 41.296054 kcal Electronic energy + Delta-G solvation = -16187.806603 eV Core-core repulsion = 13408.084371 eV Total energy + Delta-G solvation = -2779.722232 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.32762 -39.29534 -37.50041 -35.33792 -34.37239 -32.95816 -32.39886 -29.88960 -27.47472 -26.44505 -24.75020 -23.05253 -22.38344 -20.01308 -19.17618 -18.96821 -17.86992 -17.48119 -16.62985 -16.28710 -15.85373 -15.74675 -15.40414 -14.76830 -14.74764 -14.45385 -14.27486 -13.93275 -13.77331 -13.68210 -13.21481 -12.76163 -12.38201 -12.19061 -12.08145 -11.61818 -11.13871 -11.03757 -10.95862 -10.60127 -10.44481 -10.37925 -8.45407 -8.29826 -6.14289 0.35175 0.68178 1.36186 1.39894 1.56757 1.85109 1.94924 2.32611 2.35615 2.84335 3.10976 3.21385 3.51324 3.81906 4.07201 4.08675 4.12083 4.22085 4.34893 4.39728 4.67394 4.70236 4.80917 4.88277 5.05713 5.21045 5.21318 5.24041 5.39525 5.43819 5.68376 6.01806 6.25177 6.73492 6.74764 6.89376 7.30227 7.64227 8.66251 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.061311 B = 0.003525 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.577046 B = 7941.164661 C = 8368.968434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.215 4.215 3 C -0.010 4.010 4 C -0.112 4.112 5 C 0.130 3.870 6 N -0.727 5.727 7 C 0.334 3.666 8 C -0.184 4.184 9 C -0.143 4.143 10 C 0.026 3.974 11 O -0.241 6.241 12 C -0.395 4.395 13 H 0.082 0.918 14 C 0.009 3.991 15 N -0.926 5.926 16 Si 0.969 3.031 17 H -0.267 1.267 18 H -0.271 1.271 19 H -0.260 1.260 20 C 0.079 3.921 21 N -0.516 5.516 22 H 0.240 0.760 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.404 0.596 30 H 0.154 0.846 31 H 0.128 0.872 32 H 0.283 0.717 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.293 -1.135 -2.310 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.215 4.215 3 C -0.047 4.047 4 C -0.150 4.150 5 C 0.006 3.994 6 N -0.365 5.365 7 C 0.099 3.901 8 C -0.209 4.209 9 C -0.170 4.170 10 C -0.026 4.026 11 O -0.149 6.149 12 C -0.471 4.471 13 H 0.099 0.901 14 C -0.189 4.189 15 N -0.567 5.567 16 Si 0.791 3.209 17 H -0.192 1.192 18 H -0.195 1.195 19 H -0.185 1.185 20 C -0.079 4.079 21 N -0.234 5.234 22 H 0.256 0.744 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.240 0.760 30 H 0.171 0.829 31 H 0.146 0.854 32 H 0.093 0.907 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -21.567 -0.743 -1.842 21.658 hybrid contribution 0.909 -0.178 -0.142 0.937 sum -20.658 -0.921 -1.984 20.774 Atomic orbital electron populations 1.25699 0.97022 1.00354 1.00179 1.23651 0.95531 1.01146 1.01221 1.18678 0.84066 1.01698 1.00245 1.21547 0.93090 1.00777 0.99539 1.21435 0.94105 0.93803 0.90090 1.44175 1.00956 1.52572 1.38807 1.18350 0.86655 0.93213 0.91890 1.21397 0.91402 1.04736 1.03337 1.21603 0.96774 1.00000 0.98640 1.20366 0.85131 0.99413 0.97690 1.83521 1.12074 1.58856 1.60405 1.20670 0.87924 1.22522 1.16022 0.90075 1.25230 0.94664 0.98715 1.00338 1.69736 1.03894 1.41146 1.41937 0.85231 0.77694 0.79414 0.78517 1.19226 1.19546 1.18458 1.21700 0.85460 1.00982 0.99717 1.67086 1.15860 1.20046 1.20411 0.74355 0.88099 0.88121 0.90937 0.90917 0.91422 0.91465 0.76006 0.82854 0.85414 0.90715 0.81637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.04 19.25 74.32 1.43 -1.61 16 2 C -0.22 -3.41 13.34 31.13 0.42 -2.99 16 3 C -0.01 -0.12 5.70 28.79 0.16 0.05 16 4 C -0.11 -1.45 5.28 30.59 0.16 -1.29 16 5 C 0.13 2.16 4.89 86.38 0.42 2.58 16 6 N -0.73 -17.36 5.73 -344.96 -1.98 -19.34 16 7 C 0.33 11.03 7.65 133.04 1.02 12.04 16 8 C -0.18 -6.27 9.32 22.49 0.21 -6.06 16 9 C -0.14 -6.09 9.26 22.56 0.21 -5.88 16 10 C 0.03 1.20 6.67 22.67 0.15 1.36 16 11 O -0.24 -12.88 8.59 -23.24 -0.20 -13.08 16 12 C -0.39 -22.81 9.96 67.91 0.68 -22.13 16 13 H 0.08 4.85 5.49 -2.91 -0.02 4.83 16 14 C 0.01 0.49 5.49 84.82 0.47 0.95 16 15 N -0.93 -54.83 13.96 21.61 0.30 -54.53 16 16 Si 0.97 45.09 28.62 68.60 1.96 47.06 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 20 C 0.08 3.19 11.14 84.78 0.94 4.13 16 21 N -0.52 -19.15 10.39 -192.68 -2.00 -21.15 16 22 H 0.24 1.69 7.80 -4.41 -0.03 1.66 16 23 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.08 7.93 -2.39 -0.02 1.06 16 28 H 0.07 1.08 7.92 -2.39 -0.02 1.06 16 29 H 0.40 8.82 8.60 -92.70 -0.80 8.02 16 30 H 0.15 4.10 6.70 -2.91 -0.02 4.08 16 31 H 0.13 5.76 5.75 -2.91 -0.02 5.74 16 32 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.17 6.02 8.06 -2.91 -0.02 6.00 16 Total: -1.00 -67.36 295.69 4.68 -62.68 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.33 Total: 17.21 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 6.27 Total: -18.85 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -3.68 Total: -95.02 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.20 Total: -13.08 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.96 Total: 47.06 kcal Total: -67.36 4.68 -62.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162445383.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.976 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds