Wall clock time and date at job start Sun Mar 29 2020 22:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86798 * 120.00153 * 2 1 4 4 H 1.48499 * 109.47462 * 270.00155 * 3 2 1 5 5 H 1.48501 * 109.46898 * 30.00264 * 3 2 1 6 6 H 1.48503 * 109.47473 * 149.99981 * 3 2 1 7 7 C 1.38795 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00040 * 0.02562 * 7 2 1 9 9 N 1.36851 * 119.99861 * 179.97438 * 7 2 1 10 10 C 1.39306 * 119.99765 * 179.97438 * 9 7 2 11 11 C 1.39078 * 120.08695 * 180.02562 * 10 9 7 12 12 C 1.38048 * 119.91068 * 180.02562 * 11 10 9 13 13 C 1.38335 * 120.08846 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.90827 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.28422 * 21.97999 * 14 13 12 16 16 C 1.54481 * 110.24681 * 260.00033 * 14 13 12 17 17 C 1.54625 * 101.79703 * 215.60384 * 16 14 13 18 18 C 1.51287 * 104.19667 * 24.78286 * 17 16 14 19 19 O 1.21279 * 124.93807 * 163.71022 * 18 17 16 20 20 N 1.34414 * 110.11346 * 343.74448 * 18 17 16 21 21 C 1.38329 * 120.17799 * 0.27755 * 13 12 11 22 22 C 1.38054 * 120.09024 * 359.44691 * 21 13 12 23 23 H 0.97002 * 120.00613 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00519 * 0.02562 * 9 7 2 25 25 H 1.08008 * 120.04631 * 0.02562 * 11 10 9 26 26 H 1.07996 * 119.95725 * 179.97438 * 12 11 10 27 27 H 1.09002 * 110.96936 * 97.46795 * 16 14 13 28 28 H 1.09003 * 110.97019 * 333.74418 * 16 14 13 29 29 H 1.09010 * 110.48568 * 143.45878 * 17 16 14 30 30 H 1.09001 * 110.49203 * 266.09928 * 17 16 14 31 31 H 0.96996 * 124.34684 * 179.59158 * 20 18 17 32 32 H 1.08000 * 119.95527 * 179.70073 * 21 13 12 33 33 H 1.07998 * 120.04599 * 180.29162 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0465 -1.4000 5 1 1.4473 2.6526 0.7001 6 1 3.5475 1.4402 0.7000 7 6 2.0098 -1.2020 -0.0005 8 1 1.4698 -2.1373 -0.0014 9 7 3.3783 -1.2020 -0.0011 10 6 4.0748 -2.4085 -0.0011 11 6 5.4656 -2.4106 -0.0011 12 6 6.1521 -3.6083 -0.0016 13 6 5.4585 -4.8052 -0.0016 14 6 6.2121 -6.1103 -0.0028 15 1 7.2224 -5.9636 0.3792 16 6 6.2603 -6.6984 -1.4304 17 6 6.1605 -8.2159 -1.1507 18 6 5.4632 -8.3011 0.1892 19 8 4.9437 -9.3002 0.6396 20 7 5.5026 -7.1082 0.8075 21 6 4.0753 -4.8074 -0.0069 22 6 3.3812 -3.6140 -0.0006 23 1 -0.4851 0.8400 -0.0004 24 1 3.8634 -0.3620 -0.0007 25 1 6.0078 -1.4765 -0.0006 26 1 7.2321 -3.6108 -0.0020 27 1 7.2021 -6.4535 -1.9216 28 1 5.4126 -6.3544 -2.0229 29 1 5.5670 -8.7077 -1.9215 30 1 7.1545 -8.6594 -1.0924 31 1 5.1121 -6.9294 1.6771 32 1 3.5375 -5.7439 -0.0117 33 1 2.3013 -3.6165 0.0000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187575.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:12 Heat of formation + Delta-G solvation = -29.349674 kcal Electronic energy + Delta-G solvation = -16903.392262 eV Core-core repulsion = 14120.606601 eV Total energy + Delta-G solvation = -2782.785660 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.40054 -39.98468 -37.84401 -36.37055 -33.98469 -32.13085 -31.52428 -30.97466 -27.59705 -25.69963 -23.74348 -22.81651 -21.48800 -21.29425 -20.03517 -18.45330 -18.02650 -17.30114 -16.67075 -16.41446 -15.53298 -15.39394 -14.96012 -14.71497 -14.49920 -14.27188 -14.10507 -14.02066 -13.57477 -13.47700 -13.19127 -12.92530 -12.48822 -12.22785 -11.96368 -11.84188 -11.61878 -11.47635 -10.87844 -10.65996 -10.04167 -9.61525 -8.52653 -8.43048 -5.78639 0.79793 0.84192 1.26390 1.33913 1.36999 1.63912 2.19002 2.54087 2.87478 3.17061 3.31075 3.62386 3.75631 4.03518 4.21187 4.30601 4.38758 4.43616 4.68720 4.79445 4.93460 4.98053 5.12388 5.19387 5.29663 5.33941 5.54077 5.67734 5.78004 5.88743 5.97256 6.06749 6.16188 6.39153 6.68622 7.30556 7.37440 7.46848 8.73055 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045277 B = 0.004668 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.264588 B = 5997.037635 C = 6385.561441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.023 4.023 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.245 1.245 7 C -0.308 4.308 8 H 0.078 0.922 9 N -0.613 5.613 10 C 0.199 3.801 11 C -0.235 4.235 12 C -0.037 4.037 13 C -0.199 4.199 14 C 0.191 3.809 15 H 0.114 0.886 16 C -0.118 4.118 17 C -0.147 4.147 18 C 0.506 3.494 19 O -0.599 6.599 20 N -0.719 5.719 21 C -0.049 4.049 22 C -0.238 4.238 23 H 0.276 0.724 24 H 0.385 0.615 25 H 0.126 0.874 26 H 0.156 0.844 27 H 0.124 0.876 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.407 0.593 32 H 0.105 0.895 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.200 -7.391 -2.760 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.221 4.221 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.169 1.169 7 C -0.437 4.437 8 H 0.096 0.904 9 N -0.224 5.224 10 C 0.085 3.915 11 C -0.259 4.259 12 C -0.056 4.056 13 C -0.203 4.203 14 C 0.087 3.913 15 H 0.132 0.868 16 C -0.156 4.156 17 C -0.187 4.187 18 C 0.294 3.706 19 O -0.481 6.481 20 N -0.371 5.371 21 C -0.069 4.069 22 C -0.263 4.263 23 H 0.085 0.915 24 H 0.220 0.780 25 H 0.144 0.856 26 H 0.173 0.827 27 H 0.142 0.858 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.147 0.853 31 H 0.245 0.755 32 H 0.123 0.877 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.530 -7.708 -2.648 19.332 hybrid contribution -1.078 1.302 0.584 1.789 sum 16.451 -6.405 -2.064 17.775 Atomic orbital electron populations 1.69838 1.07540 1.28781 1.51720 1.25844 0.96356 1.02191 0.97717 0.85450 0.79117 0.78187 0.79430 1.18754 1.20324 1.16872 1.19228 0.81341 0.95361 1.47804 0.90429 1.40981 1.04641 1.04695 1.72132 1.18231 0.92184 0.86066 0.95023 1.20625 0.90583 0.99830 1.14845 1.20804 1.00206 0.89912 0.94709 1.19490 0.92497 0.94827 1.13524 1.20553 0.95084 0.84070 0.91618 0.86816 1.22782 1.05512 0.92222 0.95075 1.22403 1.03529 0.99072 0.93694 1.21630 0.78217 0.82087 0.88635 1.90706 1.49381 1.35237 1.72771 1.46589 1.57212 1.11256 1.22084 1.20532 0.94534 0.95450 0.96358 1.20548 0.98571 0.92449 1.14683 0.91498 0.78016 0.85564 0.82671 0.85791 0.91035 0.87796 0.85285 0.75515 0.87703 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.41 13.97 21.65 0.30 -55.11 16 2 C -0.02 -1.27 5.50 84.86 0.47 -0.80 16 3 Si 0.96 40.04 27.73 68.60 1.90 41.94 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 6 H -0.24 -9.12 6.52 99.48 0.65 -8.48 16 7 C -0.31 -16.86 10.04 84.04 0.84 -16.02 16 8 H 0.08 4.72 5.91 -2.91 -0.02 4.71 16 9 N -0.61 -28.20 5.24 -184.29 -0.97 -29.17 16 10 C 0.20 8.18 6.62 38.36 0.25 8.43 16 11 C -0.23 -7.44 9.90 22.43 0.22 -7.22 16 12 C -0.04 -0.91 9.67 22.25 0.22 -0.70 16 13 C -0.20 -5.05 4.92 -19.82 -0.10 -5.14 16 14 C 0.19 3.39 3.71 44.69 0.17 3.56 16 15 H 0.11 1.40 8.06 -2.39 -0.02 1.38 16 16 C -0.12 -1.68 6.67 31.65 0.21 -1.47 16 17 C -0.15 -2.29 6.86 30.59 0.21 -2.08 16 18 C 0.51 12.76 8.43 87.90 0.74 13.50 16 19 O -0.60 -20.98 18.03 -3.03 -0.05 -21.03 16 20 N -0.72 -15.95 5.03 -442.85 -2.23 -18.17 16 21 C -0.05 -1.64 9.31 22.25 0.21 -1.44 16 22 C -0.24 -10.00 9.30 22.43 0.21 -9.79 16 23 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 24 H 0.38 15.96 5.76 -92.71 -0.53 15.42 16 25 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 26 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 27 H 0.12 0.96 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.28 7.88 -2.39 -0.02 1.26 16 29 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.41 9.35 8.96 -92.71 -0.83 8.52 16 32 H 0.10 3.40 7.63 -2.91 -0.02 3.37 16 33 H 0.09 4.12 5.96 -2.91 -0.02 4.10 16 Total: -1.00 -69.51 280.69 2.33 -67.17 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.27 Total: 33.53 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.65 Total: -19.16 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -2.89 Total: -102.45 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.05 Total: -21.03 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.90 Total: 41.94 kcal Total: -69.51 2.33 -67.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187575.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.824 kcal (2) G-P(sol) polarization free energy of solvation -69.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds