Wall clock time and date at job start Sun Mar 29 2020 22:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21523 * 119.99930 * 2 1 4 4 C 1.40314 * 120.00056 * 180.02562 * 2 1 3 5 5 C 1.35504 * 119.99746 * 185.54969 * 4 2 1 6 6 C 1.50704 * 119.99613 * 175.39627 * 5 4 2 7 7 N 1.36491 * 120.00126 * 355.39709 * 5 4 2 8 8 C 1.38593 * 120.00062 * 240.39446 * 7 5 4 9 9 C 1.39659 * 119.42351 * 6.76621 * 8 7 5 10 10 C 1.36590 * 119.49662 * 179.97438 * 9 8 7 11 11 C 1.41312 * 118.39827 * 0.02562 * 10 9 8 12 12 C 1.41161 * 120.57582 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00170 * 145.90364 * 12 11 10 14 14 C 1.39908 * 120.00297 * 325.90605 * 12 11 10 15 15 N 1.30871 * 119.99914 * 3.83578 * 14 12 11 16 16 Si 1.86797 * 120.00324 * 183.83618 * 14 12 11 17 17 H 1.48500 * 109.47243 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47440 * 119.99943 * 16 14 12 19 19 H 1.48498 * 109.47170 * 239.99597 * 16 14 12 20 20 C 1.40808 * 118.84953 * 0.02562 * 11 10 9 21 21 N 1.31435 * 120.36425 * 359.97438 * 20 11 10 22 22 H 1.09000 * 109.47094 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47429 * 299.99944 * 1 2 3 24 24 H 1.08995 * 109.47373 * 60.00185 * 1 2 3 25 25 H 1.07998 * 120.00402 * 5.55245 * 4 2 1 26 26 H 1.08998 * 109.47378 * 275.33724 * 6 5 4 27 27 H 1.09002 * 109.47022 * 35.33822 * 6 5 4 28 28 H 1.09002 * 109.46959 * 155.33709 * 6 5 4 29 29 H 0.97004 * 120.00263 * 60.40400 * 7 5 4 30 30 H 1.07994 * 120.24802 * 0.02562 * 9 8 7 31 31 H 1.07995 * 120.80408 * 179.97438 * 10 9 8 32 32 H 0.97004 * 120.00449 * 180.02562 * 15 14 12 33 33 H 1.08001 * 119.81616 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1146 1.0524 0.0000 4 6 2.2085 -1.2151 -0.0005 5 6 3.5588 -1.2179 0.1129 6 6 4.3035 -2.5239 0.2168 7 7 4.2444 -0.0378 0.1332 8 6 5.1901 0.2311 -0.8436 9 6 5.3322 -0.6462 -1.9210 10 6 6.2634 -0.3824 -2.8848 11 6 7.0560 0.7801 -2.7533 12 6 8.0317 1.0974 -3.7228 13 1 8.2365 2.1297 -3.9651 14 6 8.7336 0.0745 -4.3698 15 7 8.4337 -1.1769 -4.1316 16 14 10.0986 0.4950 -5.5736 17 1 10.2406 1.9704 -5.6654 18 1 11.3759 -0.0960 -5.0999 19 1 9.7651 -0.0550 -6.9120 20 6 6.8557 1.6164 -1.6383 21 7 5.9457 1.3173 -0.7384 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.6724 -2.1483 -0.0915 26 1 4.3148 -2.8542 1.2555 27 1 3.8074 -3.2750 -0.3979 28 1 5.3271 -2.3872 -0.1321 29 1 4.0698 0.6126 0.8313 30 1 4.7100 -1.5260 -1.9918 31 1 6.3914 -1.0466 -3.7267 32 1 8.9205 -1.8861 -4.5799 33 1 7.4530 2.5086 -1.5221 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163733042.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:14 Heat of formation + Delta-G solvation = 17.336985 kcal Electronic energy + Delta-G solvation = -17137.801553 eV Core-core repulsion = 14357.040378 eV Total energy + Delta-G solvation = -2780.761175 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.76154 -38.46014 -36.26138 -33.89306 -31.74408 -30.73095 -30.07591 -28.99989 -27.37810 -25.00803 -22.02680 -21.68579 -20.46277 -18.63198 -17.34749 -16.85756 -16.01268 -15.34223 -15.10215 -14.49450 -14.34878 -13.93403 -13.44164 -13.24153 -12.89428 -12.60676 -12.38178 -12.24203 -11.93741 -11.86626 -11.73285 -11.56322 -11.39197 -11.07780 -10.65107 -10.03672 -9.78541 -9.32407 -9.04116 -8.48523 -8.30461 -8.10613 -6.81523 -6.66598 -4.35816 1.24318 2.65383 2.93414 3.06887 3.11869 3.17825 3.35148 3.93120 4.02025 4.62683 4.68934 5.23850 5.39390 5.54588 5.57363 5.60031 5.66930 5.74128 5.94002 5.97917 6.06432 6.26548 6.41650 6.62936 6.71314 6.78363 7.14156 7.24777 7.35960 7.75737 7.85786 8.12535 8.21092 8.29527 8.49991 8.76762 8.80354 9.56770 10.22726 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.040566 B = 0.005208 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.072188 B = 5374.749698 C = 5601.927430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.374 3.626 3 O -0.478 6.478 4 C -0.342 4.342 5 C 0.265 3.735 6 C -0.149 4.149 7 N -0.656 5.656 8 C 0.265 3.735 9 C -0.193 4.193 10 C -0.089 4.089 11 C 0.033 3.967 12 C -0.454 4.454 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.817 5.817 16 Si 0.917 3.083 17 H -0.261 1.261 18 H -0.275 1.275 19 H -0.275 1.275 20 C 0.021 3.979 21 N -0.509 5.509 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.131 0.869 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.407 0.593 30 H 0.102 0.898 31 H 0.139 0.861 32 H 0.278 0.722 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.342 -4.812 4.650 10.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.258 3.742 3 O -0.359 6.359 4 C -0.367 4.367 5 C 0.159 3.841 6 C -0.207 4.207 7 N -0.285 5.285 8 C 0.036 3.964 9 C -0.216 4.216 10 C -0.115 4.115 11 C 0.029 3.971 12 C -0.485 4.485 13 H 0.097 0.903 14 C -0.145 4.145 15 N -0.445 5.445 16 Si 0.742 3.258 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.138 4.138 21 N -0.222 5.222 22 H 0.091 0.909 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.149 0.851 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.247 0.753 30 H 0.120 0.880 31 H 0.157 0.843 32 H 0.089 0.911 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.015 -4.011 5.183 10.353 hybrid contribution 0.538 -0.490 -0.925 1.177 sum -7.477 -4.500 4.258 9.710 Atomic orbital electron populations 1.22139 0.95990 1.03419 1.03638 1.20566 0.91276 0.88990 0.73383 1.90621 1.71436 1.35086 1.38727 1.22125 0.94917 0.99910 1.19755 1.20283 0.91093 0.87745 0.84938 1.21481 1.02235 0.94134 1.02821 1.40928 1.40379 1.17268 1.29933 1.17624 0.94585 0.94190 0.90010 1.20982 1.03405 1.00302 0.96903 1.21574 0.92494 0.99171 0.98301 1.18482 0.92776 0.92869 0.93002 1.19396 1.16923 0.94244 1.17975 0.90282 1.25869 0.98147 0.94530 0.96001 1.69720 1.37494 1.00058 1.37241 0.86111 0.80180 0.79853 0.79654 1.18510 1.19988 1.19992 1.22420 0.98047 1.01928 0.91392 1.66447 1.07076 1.17513 1.31182 0.90886 0.90145 0.90065 0.85139 0.89899 0.90145 0.89904 0.75269 0.88021 0.84312 0.91097 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 10.30 36.00 0.37 -1.80 16 2 C 0.37 5.84 6.98 -33.53 -0.23 5.61 16 3 O -0.48 -9.61 14.81 5.35 0.08 -9.53 16 4 C -0.34 -4.89 9.30 -39.78 -0.37 -5.26 16 5 C 0.27 4.27 5.15 -81.49 -0.42 3.85 16 6 C -0.15 -1.97 9.06 36.01 0.33 -1.64 16 7 N -0.66 -12.96 3.69 -8.23 -0.03 -12.99 16 8 C 0.27 6.21 7.38 -154.93 -1.14 5.06 16 9 C -0.19 -4.48 8.15 -39.65 -0.32 -4.80 16 10 C -0.09 -2.26 8.73 -39.01 -0.34 -2.61 16 11 C 0.03 0.88 5.56 -106.65 -0.59 0.29 16 12 C -0.45 -11.79 9.06 -37.85 -0.34 -12.13 16 13 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 14 C 0.07 1.70 5.43 -17.34 -0.09 1.61 16 15 N -0.82 -20.62 10.62 55.55 0.59 -20.04 16 16 Si 0.92 18.55 29.56 -169.99 -5.03 13.53 16 17 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 C 0.02 0.54 10.97 -16.75 -0.18 0.36 16 21 N -0.51 -12.76 10.37 -11.74 -0.12 -12.88 16 22 H 0.07 0.63 7.91 -51.93 -0.41 0.22 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.13 1.42 7.98 -52.49 -0.42 1.00 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 28 H 0.08 1.31 6.66 -51.93 -0.35 0.96 16 29 H 0.41 8.13 7.72 -40.82 -0.32 7.81 16 30 H 0.10 2.10 6.11 -52.49 -0.32 1.78 16 31 H 0.14 3.61 6.19 -52.49 -0.33 3.29 16 32 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 33 H 0.13 3.07 8.06 -52.49 -0.42 2.65 16 LS Contribution 285.73 15.07 4.31 4.31 Total: -1.00 -29.57 285.73 -7.34 -36.91 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -3.79 Total: 12.15 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -3.35 Total: -11.46 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.44 Total: -45.91 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.57 -7.34 -36.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163733042.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.250 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds