Wall clock time and date at job start Sun Mar 29 2020 22:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21517 * 119.99938 * 2 1 4 4 C 1.40276 * 119.99720 * 180.02562 * 2 1 3 5 5 C 1.35485 * 119.99953 * 185.55835 * 4 2 1 6 6 C 1.50701 * 120.00135 * 175.54692 * 5 4 2 7 7 N 1.36504 * 120.00038 * 355.54950 * 5 4 2 8 8 C 1.39086 * 120.00141 * 243.95978 * 7 5 4 9 9 C 1.39720 * 119.57671 * 0.19002 * 8 7 5 10 10 C 1.38642 * 119.49009 * 179.76882 * 9 8 7 11 11 C 1.38360 * 118.67496 * 0.49535 * 10 9 8 12 12 C 1.40588 * 119.13672 * 359.75093 * 11 10 9 13 13 C 1.41325 * 119.78446 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00167 * 359.97438 * 13 12 11 15 15 C 1.40030 * 120.00223 * 179.97438 * 13 12 11 16 16 N 1.30750 * 119.99529 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00212 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46932 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46669 * 120.00168 * 17 15 13 20 20 H 1.48491 * 109.47090 * 240.00137 * 17 15 13 21 21 N 1.31943 * 119.57646 * 180.46331 * 8 7 5 22 22 H 1.08994 * 109.47317 * 239.99780 * 1 2 3 23 23 H 1.08997 * 109.47047 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47175 * 119.99713 * 1 2 3 25 25 H 1.08004 * 120.00441 * 5.55799 * 4 2 1 26 26 H 1.08999 * 109.47364 * 273.68041 * 6 5 4 27 27 H 1.08998 * 109.47279 * 33.67925 * 6 5 4 28 28 H 1.09001 * 109.47352 * 153.67952 * 6 5 4 29 29 H 0.97008 * 120.00272 * 64.23627 * 7 5 4 30 30 H 1.07999 * 120.25386 * 359.97438 * 9 8 7 31 31 H 1.08002 * 120.66497 * 180.22338 * 10 9 8 32 32 H 1.07994 * 120.43017 * 179.76884 * 11 10 9 33 33 H 0.96996 * 119.99555 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1146 1.0524 0.0000 4 6 2.2084 -1.2149 -0.0005 5 6 3.5584 -1.2177 0.1131 6 6 4.3034 -2.5239 0.2136 7 7 4.2439 -0.0375 0.1367 8 6 5.1389 0.2674 -0.8834 9 6 5.3267 -0.6390 -1.9300 10 6 6.2157 -0.3311 -2.9483 11 6 6.9020 0.8688 -2.8902 12 6 6.6733 1.7365 -1.8079 13 6 7.3665 2.9660 -1.7352 14 1 8.0696 3.2361 -2.5092 15 6 7.1417 3.8339 -0.6595 16 7 6.2909 3.5066 0.2778 17 14 8.0585 5.4586 -0.5630 18 1 8.9572 5.5904 -1.7378 19 1 7.0827 6.5780 -0.5586 20 1 8.8639 5.4991 0.6839 21 7 5.8039 1.4065 -0.8474 22 1 -0.3633 -0.5138 0.8899 23 1 -0.3633 1.0276 -0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 1.6722 -2.1480 -0.0915 26 1 4.3400 -2.8421 1.2554 27 1 3.7909 -3.2811 -0.3797 28 1 5.3182 -2.3932 -0.1623 29 1 4.1098 0.5868 0.8669 30 1 4.7809 -1.5708 -1.9473 31 1 6.3727 -1.0163 -3.7683 32 1 7.6040 1.1356 -3.6662 33 1 6.1350 4.1079 1.0227 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163738268.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:16 Heat of formation + Delta-G solvation = 26.842253 kcal Electronic energy + Delta-G solvation = -17399.852337 eV Core-core repulsion = 14619.503341 eV Total energy + Delta-G solvation = -2780.348996 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.61578 -38.18836 -36.10861 -33.45851 -31.86245 -30.50528 -29.92500 -28.56611 -27.34595 -25.38006 -21.81873 -21.52703 -20.31417 -18.59558 -17.18362 -16.60388 -15.70619 -15.25347 -14.82252 -14.53011 -14.35478 -13.78631 -13.35891 -13.15950 -12.83570 -12.61929 -12.24224 -12.13129 -11.94358 -11.82762 -11.78834 -11.23979 -10.97994 -10.64276 -10.45212 -9.98221 -9.91843 -9.27980 -8.94760 -8.57523 -7.93867 -7.55749 -6.64900 -6.33789 -4.48950 1.32581 2.84634 3.12630 3.16851 3.17030 3.25687 3.40207 3.98899 4.14209 4.69264 4.82698 5.30944 5.47019 5.56941 5.61483 5.68925 5.76733 5.95531 6.00852 6.05582 6.16267 6.37045 6.53655 6.72610 6.81640 6.85029 7.00072 7.23533 7.54980 7.78105 7.87616 8.12116 8.22952 8.35468 8.55261 8.77941 9.03422 10.19675 10.37902 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024003 B = 0.007044 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.245026 B = 3974.076478 C = 4691.449405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.367 3.633 3 O -0.458 6.458 4 C -0.328 4.328 5 C 0.264 3.736 6 C -0.148 4.148 7 N -0.666 5.666 8 C 0.409 3.591 9 C -0.363 4.363 10 C -0.033 4.033 11 C -0.309 4.309 12 C 0.288 3.712 13 C -0.430 4.430 14 H 0.085 0.915 15 C 0.068 3.932 16 N -0.709 5.709 17 Si 0.906 3.094 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.274 1.274 21 N -0.518 5.518 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.130 0.870 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.412 0.588 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 -8.359 1.863 10.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.249 3.751 3 O -0.336 6.336 4 C -0.352 4.352 5 C 0.161 3.839 6 C -0.206 4.206 7 N -0.297 5.297 8 C 0.171 3.829 9 C -0.389 4.389 10 C -0.057 4.057 11 C -0.331 4.331 12 C 0.162 3.838 13 C -0.462 4.462 14 H 0.103 0.897 15 C -0.157 4.157 16 N -0.331 5.331 17 Si 0.731 3.269 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.199 1.199 21 N -0.237 5.237 22 H 0.099 0.901 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.148 0.852 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.253 0.747 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.327 -7.222 2.650 9.960 hybrid contribution 0.170 0.124 -0.326 0.389 sum -6.157 -7.097 2.323 9.679 Atomic orbital electron populations 1.22209 0.95951 1.03870 1.03245 1.20619 0.91363 0.89133 0.73976 1.90724 1.71409 1.34747 1.36752 1.22216 0.95119 0.99976 1.17843 1.20272 0.90950 0.87970 0.84672 1.21502 1.02307 0.94140 1.02677 1.41314 1.43999 1.18307 1.26120 1.18324 0.88030 0.91025 0.85504 1.20692 1.13621 1.02775 1.01774 1.20601 0.94168 0.95390 0.95587 1.21587 1.09446 0.98504 1.03613 1.18221 0.87679 0.91993 0.85955 1.19644 1.20283 0.99946 1.06323 0.89665 1.26090 0.94721 0.99730 0.95177 1.70159 1.23171 1.33568 1.06161 0.86296 0.79970 0.81477 0.79205 1.18398 1.19887 1.19910 1.68102 1.11896 1.14674 1.29065 0.90051 0.90876 0.90029 0.85186 0.90049 0.90410 0.89721 0.74712 0.88697 0.88643 0.88446 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.36 10.19 36.01 0.37 -2.00 16 2 C 0.37 6.20 6.97 -33.54 -0.23 5.97 16 3 O -0.46 -10.18 14.90 5.35 0.08 -10.10 16 4 C -0.33 -4.94 9.37 -39.80 -0.37 -5.31 16 5 C 0.26 4.48 5.18 -81.50 -0.42 4.06 16 6 C -0.15 -1.97 9.05 36.01 0.33 -1.64 16 7 N -0.67 -14.42 3.57 -8.26 -0.03 -14.45 16 8 C 0.41 10.33 7.48 -155.11 -1.16 9.17 16 9 C -0.36 -8.43 8.34 -38.88 -0.32 -8.76 16 10 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 11 C -0.31 -7.87 9.83 -38.65 -0.38 -8.25 16 12 C 0.29 8.17 6.55 -85.00 -0.56 7.62 16 13 C -0.43 -11.86 9.14 -37.74 -0.34 -12.20 16 14 H 0.09 2.19 7.85 -52.48 -0.41 1.78 16 15 C 0.07 1.80 5.50 -17.34 -0.10 1.70 16 16 N -0.71 -19.55 11.46 55.55 0.64 -18.91 16 17 Si 0.91 19.14 29.56 -169.99 -5.02 14.12 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 N -0.52 -14.80 7.89 -10.28 -0.08 -14.88 16 22 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.08 1.30 6.60 -51.93 -0.34 0.96 16 29 H 0.41 9.40 7.95 -40.82 -0.32 9.07 16 30 H 0.09 1.93 5.85 -52.49 -0.31 1.63 16 31 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 32 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 33 H 0.27 6.79 8.29 -40.82 -0.34 6.46 16 LS Contribution 287.81 15.07 4.34 4.34 Total: -1.00 -32.24 287.81 -7.58 -39.82 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -3.90 Total: 10.87 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.60 Total: -10.81 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.53 Total: -48.24 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.24 -7.58 -39.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163738268.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.664 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds