Wall clock time and date at job start Sun Mar 29 2020 22:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21705 * 119.99792 * 2 1 4 4 C 1.39189 * 120.00681 * 179.97438 * 2 1 3 5 5 C 1.38639 * 120.00700 * 180.57479 * 4 2 1 6 6 C 1.50694 * 120.00170 * 187.17359 * 5 4 2 7 7 N 1.32473 * 119.99548 * 7.16880 * 5 4 2 8 8 C 1.34446 * 119.99821 * 77.52464 * 7 5 4 9 9 C 1.41620 * 120.52311 * 2.28604 * 8 7 5 10 10 C 1.34983 * 120.02162 * 179.97438 * 9 8 7 11 11 N 1.35931 * 121.16327 * 359.97438 * 10 9 8 12 12 H 0.97003 * 119.46614 * 180.02562 * 11 10 9 13 13 C 1.37584 * 121.07476 * 0.02562 * 11 10 9 14 14 C 1.40090 * 120.05063 * 180.27397 * 13 11 10 15 15 H 1.07999 * 119.99625 * 148.09256 * 14 13 11 16 16 C 1.40481 * 120.00175 * 328.09502 * 14 13 11 17 17 N 1.30506 * 119.99864 * 1.92567 * 16 14 13 18 18 Si 1.86796 * 120.00183 * 181.92228 * 16 14 13 19 19 H 1.48505 * 109.47116 * 59.99945 * 18 16 14 20 20 H 1.48502 * 109.47206 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47220 * 300.00176 * 18 16 14 22 22 C 1.39638 * 119.90109 * 359.97438 * 13 11 10 23 23 H 1.08994 * 109.47064 * 244.98726 * 1 2 3 24 24 H 1.08992 * 109.47139 * 4.99249 * 1 2 3 25 25 H 1.09001 * 109.46239 * 124.99240 * 1 2 3 26 26 H 1.08011 * 119.99701 * 0.57475 * 4 2 1 27 27 H 1.09001 * 109.46787 * 269.99714 * 6 5 4 28 28 H 1.08994 * 109.47514 * 29.99502 * 6 5 4 29 29 H 1.09003 * 109.47266 * 149.99996 * 6 5 4 30 30 H 1.08007 * 119.98838 * 359.97438 * 9 8 7 31 31 H 1.08006 * 119.41802 * 180.02562 * 10 9 8 32 32 H 0.96996 * 119.99953 * 179.97438 * 17 16 14 33 33 H 1.07993 * 120.56043 * 179.97438 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1155 1.0540 0.0000 4 6 2.2031 -1.2053 0.0005 5 6 3.5894 -1.2054 0.0126 6 6 4.3444 -2.4994 -0.1497 7 7 4.2504 -0.0677 0.1667 8 6 4.3581 0.4872 1.3866 9 6 3.8108 -0.1591 2.5216 10 6 3.9251 0.4069 3.7417 11 7 4.5613 1.5966 3.9084 12 1 4.6295 1.9809 4.7964 13 6 5.1100 2.2646 2.8380 14 6 5.7659 3.4866 3.0352 15 1 6.5961 3.7622 2.4018 16 6 5.3438 4.3536 4.0568 17 7 4.3651 4.0041 4.8463 18 14 6.1835 6.0064 4.2855 19 1 6.0354 6.8124 3.0470 20 1 5.5565 6.7271 5.4225 21 1 7.6257 5.7941 4.5682 22 6 5.0176 1.7195 1.5557 23 1 -0.3633 -0.4345 0.9312 24 1 -0.3633 1.0237 -0.0894 25 1 -0.3632 -0.5894 -0.8419 26 1 1.6632 -2.1407 -0.0084 27 1 4.5175 -2.9444 0.8301 28 1 3.7606 -3.1862 -0.7625 29 1 5.3010 -2.3037 -0.6341 30 1 3.3017 -1.1052 2.4110 31 1 3.5045 -0.0947 4.6007 32 1 4.0739 4.6025 5.5519 33 1 5.4441 2.2349 0.7080 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163741816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:19 Heat of formation + Delta-G solvation = 1.339444 kcal Electronic energy + Delta-G solvation = -17420.022330 eV Core-core repulsion = 14638.567450 eV Total energy + Delta-G solvation = -2781.454880 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.96763 -39.91599 -37.49073 -35.72079 -33.52433 -32.40949 -31.43696 -29.77996 -28.20465 -27.80870 -23.81653 -23.56600 -21.34728 -20.28669 -18.89126 -18.50854 -17.17516 -16.81476 -16.53936 -16.34860 -15.53435 -15.36609 -14.87041 -14.67699 -14.45085 -13.94659 -13.80460 -13.56958 -13.36597 -13.08787 -12.99718 -12.81436 -12.76176 -12.65682 -12.52914 -11.96835 -11.53901 -11.37942 -10.81602 -10.02554 -9.97948 -9.06188 -8.61183 -7.84230 -6.84684 0.34772 0.79544 0.94830 1.39714 1.51859 1.56690 2.12270 2.44571 2.51309 2.82807 3.32943 3.89627 4.07191 4.27235 4.46220 4.58664 4.62948 4.70842 4.76005 4.79968 4.83269 4.89653 4.95386 5.03274 5.08579 5.19846 5.49885 5.56395 5.81816 5.92190 5.95660 6.14844 6.35121 6.42130 6.76980 7.04125 7.46174 7.97416 8.05518 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031111 B = 0.006195 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.792285 B = 4518.419835 C = 4756.909533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.348 3.652 3 O -0.549 6.549 4 C -0.435 4.435 5 C 0.262 3.738 6 C -0.132 4.132 7 N -0.708 5.708 8 C 0.334 3.666 9 C -0.307 4.307 10 C 0.148 3.852 11 N -0.577 5.577 12 H 0.428 0.572 13 C 0.321 3.679 14 C -0.487 4.487 15 H 0.102 0.898 16 C 0.048 3.952 17 N -0.830 5.830 18 Si 1.003 2.997 19 H -0.269 1.269 20 H -0.259 1.259 21 H -0.250 1.250 22 C -0.368 4.368 23 H 0.097 0.903 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.135 0.865 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.198 0.802 32 H 0.310 0.690 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.782 -5.743 5.779 8.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.239 3.761 3 O -0.437 6.437 4 C -0.461 4.461 5 C 0.144 3.856 6 C -0.189 4.189 7 N -0.431 5.431 8 C 0.193 3.807 9 C -0.335 4.335 10 C 0.016 3.984 11 N -0.186 5.186 12 H 0.272 0.728 13 C 0.210 3.790 14 C -0.519 4.519 15 H 0.120 0.880 16 C -0.170 4.170 17 N -0.457 5.457 18 Si 0.822 3.178 19 H -0.194 1.194 20 H -0.183 1.183 21 H -0.173 1.173 22 C -0.396 4.396 23 H 0.116 0.884 24 H 0.073 0.927 25 H 0.117 0.883 26 H 0.153 0.847 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.215 0.785 32 H 0.122 0.878 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.362 -4.995 5.180 7.324 hybrid contribution -0.352 0.500 0.186 0.639 sum -1.714 -4.495 5.366 7.207 Atomic orbital electron populations 1.22109 0.94175 1.02938 1.04703 1.20806 0.92598 0.89295 0.73369 1.90712 1.72860 1.36612 1.43468 1.22431 0.94488 0.98970 1.30171 1.21897 0.92412 0.90739 0.80536 1.21357 1.00177 0.93927 1.03483 1.65830 1.42256 1.16020 1.18952 1.18287 0.85997 0.89551 0.86822 1.21362 1.14107 1.05212 0.92826 1.22250 0.91138 0.85671 0.99370 1.42421 1.47371 1.17077 1.11714 0.72831 1.18010 0.85301 0.90437 0.85271 1.19790 1.16397 1.00193 1.15561 0.88049 1.26981 0.93423 1.04627 0.91936 1.68968 1.21548 1.40349 1.14877 0.84885 0.79420 0.74515 0.78938 1.19413 1.18297 1.17318 1.20371 1.23020 1.01687 0.94554 0.88424 0.92696 0.88344 0.84675 0.88819 0.89089 0.92041 0.84657 0.78516 0.87789 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.04 10.18 71.24 0.73 -5.32 16 2 C 0.35 15.85 6.86 25.91 0.18 16.02 16 3 O -0.55 -31.66 14.41 -4.36 -0.06 -31.72 16 4 C -0.44 -17.82 8.71 22.59 0.20 -17.62 16 5 C 0.26 11.46 4.64 42.56 0.20 11.66 16 6 C -0.13 -4.26 10.19 71.23 0.73 -3.54 16 7 N -0.71 -37.59 8.80 -175.84 -1.55 -39.14 16 8 C 0.33 17.39 4.96 40.20 0.20 17.59 16 9 C -0.31 -13.11 9.02 22.36 0.20 -12.91 16 10 C 0.15 5.40 11.15 83.31 0.93 6.33 16 11 N -0.58 -24.02 4.86 -187.88 -0.91 -24.94 16 12 H 0.43 16.48 6.42 -92.71 -0.60 15.88 16 13 C 0.32 15.91 6.33 39.03 0.25 16.16 16 14 C -0.49 -23.07 9.06 23.27 0.21 -22.86 16 15 H 0.10 4.72 7.85 -2.91 -0.02 4.69 16 16 C 0.05 2.00 5.42 85.44 0.46 2.46 16 17 N -0.83 -34.13 10.86 21.92 0.24 -33.90 16 18 Si 1.00 32.14 29.56 68.60 2.03 34.17 16 19 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 20 H -0.26 -7.64 7.11 99.48 0.71 -6.93 16 21 H -0.25 -7.61 7.11 99.48 0.71 -6.90 16 22 C -0.37 -20.22 9.81 23.23 0.23 -20.00 16 23 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 24 H 0.05 1.89 8.12 -2.39 -0.02 1.87 16 25 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 27 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.09 2.38 8.09 -2.39 -0.02 2.36 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.14 5.24 6.68 -2.91 -0.02 5.22 16 31 H 0.20 4.79 8.06 -2.91 -0.02 4.77 16 32 H 0.31 11.26 8.29 -92.71 -0.77 10.50 16 33 H 0.09 5.11 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -69.75 288.36 4.77 -64.98 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: 0.53 Total: 42.55 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 4.50 Total: -12.01 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -2.22 Total: -97.97 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.06 Total: -31.72 kcal Atomic # 14 Polarization: 32.14 SS G_CDS: 2.03 Total: 34.17 kcal Total: -69.75 4.77 -64.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163741816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.318 kcal (2) G-P(sol) polarization free energy of solvation -69.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds