Wall clock time and date at job start Sun Mar 29 2020 23:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47250 * 2 1 4 4 C 1.46504 * 119.99884 * 269.99809 * 3 2 1 5 5 C 1.50699 * 109.47372 * 270.00141 * 4 3 2 6 6 H 1.08004 * 119.99739 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00309 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99894 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00271 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47105 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47191 * 119.99885 * 9 7 5 12 12 H 1.48493 * 109.47578 * 240.00243 * 9 7 5 13 13 C 1.39121 * 120.00346 * 89.99770 * 3 2 1 14 14 C 1.39467 * 119.50997 * 5.00268 * 13 3 2 15 15 C 1.38095 * 119.63107 * 179.97438 * 14 13 3 16 16 C 1.39240 * 118.43662 * 359.97438 * 15 14 13 17 17 O 1.34806 * 133.53189 * 179.97438 * 16 15 14 18 18 C 1.34345 * 110.79594 * 180.02562 * 17 16 15 19 19 C 1.34135 * 110.10186 * 0.04461 * 18 17 16 20 20 C 1.40355 * 118.97523 * 0.02562 * 16 15 14 21 21 N 1.32125 * 119.51255 * 185.01845 * 13 3 2 22 22 H 1.09004 * 109.47064 * 300.00383 * 1 2 3 23 23 H 1.09004 * 109.47153 * 60.00314 * 1 2 3 24 24 H 1.09003 * 109.47548 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47064 * 239.99617 * 2 1 3 26 26 H 1.09004 * 109.47153 * 119.99686 * 2 1 3 27 27 H 1.08999 * 109.46816 * 29.99928 * 4 3 2 28 28 H 1.08999 * 109.47167 * 150.00034 * 4 3 2 29 29 H 0.97003 * 119.99915 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.19075 * 359.97438 * 14 13 3 31 31 H 1.07993 * 120.78410 * 179.72537 * 15 14 13 32 32 H 1.07999 * 124.95075 * 179.97438 * 18 17 16 33 33 H 1.07999 * 126.86386 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1491 2.3894 -2.8780 8 7 3.3491 3.1255 -3.6181 9 14 5.9135 2.0964 -3.4169 10 1 6.6012 1.2412 -2.4164 11 1 5.9215 1.4167 -4.7373 12 1 6.6205 3.3977 -3.5258 13 6 2.2502 2.0371 1.2048 14 6 2.1154 1.3385 2.4043 15 6 2.3455 1.9869 3.6016 16 6 2.7086 3.3307 3.5688 17 8 2.9975 4.2381 4.5230 18 6 3.2953 5.4281 3.9752 19 6 3.2139 5.3535 2.6384 20 6 2.8262 3.9731 2.3264 21 7 2.5945 3.3126 1.1957 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5817 1.6876 -2.0284 28 1 2.0956 3.1410 -1.1385 29 1 3.6750 3.5153 -4.4444 30 1 1.8327 0.2962 2.3970 31 1 2.2422 1.4652 4.5415 32 1 3.5605 6.3157 4.5303 33 1 3.3981 6.1500 1.9327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591704.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:25 Heat of formation + Delta-G solvation = 53.168133 kcal Electronic energy + Delta-G solvation = -17428.986297 eV Core-core repulsion = 14649.778877 eV Total energy + Delta-G solvation = -2779.207420 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.02628 -38.86010 -35.83801 -32.90568 -32.47625 -31.25486 -29.77927 -28.90773 -26.42120 -23.68138 -23.24447 -22.11262 -20.90761 -20.30111 -17.44498 -16.93365 -16.57597 -16.12421 -15.79002 -14.96810 -14.27934 -13.97616 -13.74154 -13.29281 -12.92451 -12.68737 -12.48229 -12.36137 -12.24859 -11.97022 -11.60813 -11.13524 -10.88191 -10.59838 -10.47757 -10.11374 -10.07097 -9.75996 -8.90276 -8.58758 -8.37258 -8.27082 -6.69908 -5.96494 -4.03558 1.27224 1.96471 2.69336 3.12301 3.30987 3.38559 3.42876 3.77694 4.42852 4.49036 4.64844 5.02386 5.22914 5.34039 5.36152 5.43873 5.56106 5.65200 5.69121 5.82444 6.04548 6.12220 6.24920 6.26419 6.34015 6.55952 6.60197 6.70238 7.11827 7.41869 7.56007 7.88643 8.00854 8.30871 8.33252 8.88637 9.04043 9.60583 11.07988 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.007688 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.141166 B = 3640.987881 C = 4616.144104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.587 5.587 4 C 0.253 3.747 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.422 3.578 14 C -0.222 4.222 15 C -0.023 4.023 16 C -0.085 4.085 17 O -0.198 6.198 18 C 0.014 3.986 19 C -0.207 4.207 20 C 0.133 3.867 21 N -0.497 5.497 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.027 0.973 28 H 0.050 0.950 29 H 0.261 0.739 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.207 0.793 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 -1.569 13.179 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.297 5.297 4 C 0.134 3.866 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.180 3.820 14 C -0.247 4.247 15 C -0.050 4.050 16 C -0.135 4.135 17 O -0.099 6.099 18 C -0.053 4.053 19 C -0.228 4.228 20 C 0.000 4.000 21 N -0.216 5.216 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.223 0.777 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.451 -1.199 12.291 12.823 hybrid contribution 1.018 -0.340 0.140 1.083 sum -2.433 -1.539 12.431 12.760 Atomic orbital electron populations 1.22240 0.96990 1.01223 1.02382 1.21353 0.93264 0.83164 1.02499 1.47140 1.66272 1.12090 1.04205 1.19276 0.95765 0.93864 0.77694 1.21521 0.97079 1.31424 1.05970 0.92646 1.24909 0.97605 0.95081 0.96469 1.69946 1.35466 1.33733 1.14314 0.86503 0.84991 0.77986 0.78294 1.19920 1.21027 1.20959 1.18251 0.89761 0.87556 0.86442 1.21327 1.11086 1.01191 0.91093 1.19931 0.97448 0.89026 0.98550 1.20093 1.12562 0.92931 0.87940 1.83877 1.72844 1.18292 1.34901 1.23891 1.00603 0.87658 0.93139 1.22289 1.09398 0.95619 0.95510 1.20453 0.97700 0.94073 0.87818 1.66689 1.19229 1.07494 1.28220 0.92973 0.92151 0.92268 0.89917 0.91739 0.95466 0.93245 0.92904 0.84229 0.84921 0.77680 0.82361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.12 2.03 5.96 -4.05 -0.02 2.01 16 3 N -0.59 -12.71 2.57 -175.14 -0.45 -13.16 16 4 C 0.25 6.65 5.22 -5.19 -0.03 6.63 16 5 C -0.52 -14.85 9.39 -34.44 -0.32 -15.17 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.42 8.99 7.37 -155.01 -1.14 7.85 16 14 C -0.22 -3.77 9.25 -39.18 -0.36 -4.13 16 15 C -0.02 -0.37 10.18 -39.26 -0.40 -0.77 16 16 C -0.08 -1.51 7.42 -38.41 -0.29 -1.80 16 17 O -0.20 -3.11 10.58 4.20 0.04 -3.06 16 18 C 0.01 0.19 11.96 29.29 0.35 0.54 16 19 C -0.21 -3.40 11.14 -37.60 -0.42 -3.81 16 20 C 0.13 2.71 7.54 -83.14 -0.63 2.09 16 21 N -0.50 -11.61 9.12 -9.04 -0.08 -11.69 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 26 H 0.06 0.92 5.96 -51.93 -0.31 0.61 16 27 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.05 1.45 7.29 -51.93 -0.38 1.07 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.14 1.93 5.99 -52.49 -0.31 1.62 16 31 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.21 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 287.65 15.07 4.33 4.33 Total: -1.00 -33.34 287.65 -7.34 -40.68 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -3.92 Total: -1.23 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.98 Total: -6.97 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.20 Total: -50.84 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.34 -7.34 -40.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591704.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.844 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds