Wall clock time and date at job start Sun Mar 29 2020 23:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47250 * 2 1 4 4 C 1.46504 * 119.99884 * 269.99809 * 3 2 1 5 5 C 1.50699 * 109.47372 * 270.00141 * 4 3 2 6 6 H 1.08004 * 119.99739 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00309 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99894 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00271 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47105 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47191 * 119.99885 * 9 7 5 12 12 H 1.48493 * 109.47578 * 240.00243 * 9 7 5 13 13 C 1.39121 * 120.00346 * 89.99770 * 3 2 1 14 14 C 1.39467 * 119.50997 * 5.00268 * 13 3 2 15 15 C 1.38095 * 119.63107 * 179.97438 * 14 13 3 16 16 C 1.39240 * 118.43662 * 359.97438 * 15 14 13 17 17 O 1.34806 * 133.53189 * 179.97438 * 16 15 14 18 18 C 1.34345 * 110.79594 * 180.02562 * 17 16 15 19 19 C 1.34135 * 110.10186 * 0.04461 * 18 17 16 20 20 C 1.40355 * 118.97523 * 0.02562 * 16 15 14 21 21 N 1.32125 * 119.51255 * 185.01845 * 13 3 2 22 22 H 1.09004 * 109.47064 * 300.00383 * 1 2 3 23 23 H 1.09004 * 109.47153 * 60.00314 * 1 2 3 24 24 H 1.09003 * 109.47548 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47064 * 239.99617 * 2 1 3 26 26 H 1.09004 * 109.47153 * 119.99686 * 2 1 3 27 27 H 1.08999 * 109.46816 * 29.99928 * 4 3 2 28 28 H 1.08999 * 109.47167 * 150.00034 * 4 3 2 29 29 H 0.97003 * 119.99915 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.19075 * 359.97438 * 14 13 3 31 31 H 1.07993 * 120.78410 * 179.72537 * 15 14 13 32 32 H 1.07999 * 124.95075 * 179.97438 * 18 17 16 33 33 H 1.07999 * 126.86386 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1491 2.3894 -2.8780 8 7 3.3491 3.1255 -3.6181 9 14 5.9135 2.0964 -3.4169 10 1 6.6012 1.2412 -2.4164 11 1 5.9215 1.4167 -4.7373 12 1 6.6205 3.3977 -3.5258 13 6 2.2502 2.0371 1.2048 14 6 2.1154 1.3385 2.4043 15 6 2.3455 1.9869 3.6016 16 6 2.7086 3.3307 3.5688 17 8 2.9975 4.2381 4.5230 18 6 3.2953 5.4281 3.9752 19 6 3.2139 5.3535 2.6384 20 6 2.8262 3.9731 2.3264 21 7 2.5945 3.3126 1.1957 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5817 1.6876 -2.0284 28 1 2.0956 3.1410 -1.1385 29 1 3.6750 3.5153 -4.4444 30 1 1.8327 0.2962 2.3970 31 1 2.2422 1.4652 4.5415 32 1 3.5605 6.3157 4.5303 33 1 3.3981 6.1500 1.9327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591704.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:25 Heat of formation + Delta-G solvation = 32.143880 kcal Electronic energy + Delta-G solvation = -17429.897977 eV Core-core repulsion = 14649.778877 eV Total energy + Delta-G solvation = -2780.119100 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.30173 -40.30581 -37.36731 -34.89267 -33.92291 -32.60447 -31.20536 -30.50657 -28.18810 -25.42467 -24.58608 -23.66015 -22.17163 -21.79447 -18.74010 -18.66419 -18.17749 -17.81426 -17.08004 -16.66396 -16.02934 -15.41746 -15.03814 -14.74895 -14.35252 -14.10835 -14.08118 -13.73574 -13.59009 -13.45598 -13.23725 -12.97612 -12.67555 -12.44850 -12.18688 -11.77365 -11.73319 -11.40363 -10.62733 -10.54261 -10.03838 -9.53524 -8.43765 -8.00712 -6.32899 0.01587 0.54185 1.33863 1.35687 1.47571 1.47969 1.90948 2.27318 2.42604 3.00733 3.09488 3.37958 3.74911 3.98009 4.10228 4.24083 4.33084 4.43891 4.47168 4.66076 4.82916 4.87964 4.96302 5.03014 5.06044 5.13186 5.28113 5.35962 5.42421 5.48488 5.70303 6.10316 6.15943 6.31173 6.62231 6.82677 7.34437 7.48229 8.87457 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.007688 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.141166 B = 3640.987881 C = 4616.144104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 N -0.602 5.602 4 C 0.276 3.724 5 C -0.532 4.532 6 H 0.046 0.954 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.963 3.037 10 H -0.271 1.271 11 H -0.269 1.269 12 H -0.281 1.281 13 C 0.394 3.606 14 C -0.217 4.217 15 C -0.010 4.010 16 C -0.091 4.091 17 O -0.193 6.193 18 C 0.058 3.942 19 C -0.253 4.253 20 C 0.090 3.910 21 N -0.559 5.559 22 H 0.054 0.946 23 H 0.034 0.966 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.009 0.991 28 H 0.006 0.994 29 H 0.265 0.735 30 H 0.175 0.825 31 H 0.182 0.818 32 H 0.267 0.733 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 -2.562 15.944 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.006 4.006 3 N -0.314 5.314 4 C 0.154 3.846 5 C -0.571 4.571 6 H 0.064 0.936 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.788 3.212 10 H -0.195 1.195 11 H -0.195 1.195 12 H -0.207 1.207 13 C 0.154 3.846 14 C -0.242 4.242 15 C -0.036 4.036 16 C -0.142 4.142 17 O -0.093 6.093 18 C -0.009 4.009 19 C -0.274 4.274 20 C -0.042 4.042 21 N -0.280 5.280 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.114 0.886 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.027 0.973 28 H 0.025 0.975 29 H 0.074 0.926 30 H 0.192 0.808 31 H 0.199 0.801 32 H 0.283 0.717 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.773 -2.204 15.103 15.513 hybrid contribution 0.788 0.078 -0.591 0.988 sum -1.985 -2.127 14.512 14.800 Atomic orbital electron populations 1.22149 0.95092 1.03197 1.01287 1.21618 0.94781 0.80809 1.03418 1.47036 1.67821 1.13643 1.02904 1.18596 0.94380 0.91847 0.79768 1.21747 0.98026 1.31283 1.06091 0.93572 1.25796 1.02028 0.94703 0.96518 1.70067 1.37512 1.34554 1.14790 0.85437 0.79512 0.77936 0.78315 1.19512 1.19462 1.20707 1.18716 0.90713 0.87701 0.87505 1.21593 1.10404 1.02501 0.89658 1.20470 0.94921 0.88247 0.99935 1.20370 1.12406 0.94018 0.87418 1.83916 1.72312 1.18773 1.34286 1.24923 0.95996 0.87837 0.92139 1.22570 1.12582 0.94768 0.97466 1.21094 0.98740 0.96032 0.88313 1.66573 1.21407 1.09278 1.30704 0.92653 0.94636 0.88602 0.91182 0.88502 0.97315 0.97548 0.92584 0.80764 0.80111 0.71702 0.82204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 10.24 71.98 0.74 -3.65 16 2 C 0.12 3.85 5.96 86.38 0.52 4.37 16 3 N -0.60 -27.05 2.57 -708.02 -1.82 -28.88 16 4 C 0.28 15.46 5.22 85.63 0.45 15.91 16 5 C -0.53 -31.68 9.39 25.60 0.24 -31.44 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -57.54 13.29 21.44 0.28 -57.26 16 9 Si 0.96 46.26 29.54 68.60 2.03 48.28 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 C 0.39 17.19 7.37 133.18 0.98 18.17 16 14 C -0.22 -6.98 9.25 22.53 0.21 -6.77 16 15 C -0.01 -0.29 10.18 22.48 0.23 -0.06 16 16 C -0.09 -3.11 7.42 23.03 0.17 -2.94 16 17 O -0.19 -5.42 10.58 -7.88 -0.08 -5.51 16 18 C 0.06 1.33 11.96 66.88 0.80 2.13 16 19 C -0.25 -8.28 11.14 23.56 0.26 -8.02 16 20 C 0.09 3.74 7.54 41.71 0.31 4.06 16 21 N -0.56 -27.45 9.12 -182.50 -1.66 -29.11 16 22 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 23 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.07 2.46 8.07 -2.38 -0.02 2.44 16 26 H 0.10 2.53 5.96 -2.38 -0.01 2.52 16 27 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 28 H 0.01 0.41 7.29 -2.39 -0.02 0.39 16 29 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.18 4.18 5.99 -2.91 -0.02 4.17 16 31 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.27 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.16 4.94 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -78.51 287.65 5.22 -73.29 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.11 Total: 6.50 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 5.37 Total: -7.32 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -3.20 Total: -115.25 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.08 Total: -5.51 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -78.51 5.22 -73.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591704.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.433 kcal (2) G-P(sol) polarization free energy of solvation -78.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds