Wall clock time and date at job start Sun Mar 29 2020 22:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36854 * 119.99923 * 2 1 4 4 H 1.07996 * 120.00008 * 180.43309 * 3 2 1 5 5 C 1.38828 * 119.99830 * 0.43555 * 3 2 1 6 6 N 1.31541 * 120.00025 * 344.17891 * 5 3 2 7 7 Si 1.86797 * 119.99942 * 164.18603 * 5 3 2 8 8 H 1.48497 * 109.47404 * 59.99493 * 7 5 3 9 9 H 1.48503 * 109.47468 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46963 * 299.99735 * 7 5 3 11 11 C 1.38229 * 120.00188 * 180.02562 * 2 1 3 12 12 N 1.32094 * 120.15049 * 268.48573 * 11 2 1 13 13 C 1.32507 * 122.63728 * 179.97438 * 12 11 2 14 14 C 1.36231 * 121.99588 * 359.97438 * 13 12 11 15 15 C 1.40792 * 118.86429 * 0.02562 * 14 13 12 16 16 C 1.40396 * 122.17192 * 179.97438 * 15 14 13 17 17 F 1.35106 * 120.28741 * 0.03347 * 16 15 14 18 18 C 1.36520 * 119.42469 * 180.30390 * 16 15 14 19 19 C 1.39229 * 120.93539 * 359.44388 * 18 16 15 20 20 C 1.36353 * 121.07457 * 0.56927 * 19 18 16 21 21 C 1.40041 * 119.59206 * 359.71819 * 20 19 18 22 22 H 1.09004 * 109.46855 * 185.35096 * 1 2 3 23 23 H 1.09007 * 109.46637 * 305.34694 * 1 2 3 24 24 H 1.08991 * 109.47638 * 65.35010 * 1 2 3 25 25 H 0.97003 * 120.00072 * 179.97438 * 6 5 3 26 26 H 1.07997 * 119.00136 * 180.02562 * 13 12 11 27 27 H 1.07999 * 120.56975 * 179.97438 * 14 13 12 28 28 H 1.07997 * 119.52992 * 179.73329 * 18 16 15 29 29 H 1.08001 * 119.45968 * 180.28811 * 19 18 16 30 30 H 1.08003 * 120.20249 * 179.74675 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1852 0.0000 4 1 3.2292 1.1852 -0.0071 5 6 1.4551 2.3874 0.0091 6 7 0.1751 2.4101 -0.2929 7 14 2.3389 3.9729 0.4502 8 1 3.4471 4.2057 -0.5105 9 1 1.3825 5.1071 0.3863 10 1 2.8900 3.8664 1.8251 11 6 2.1562 -1.1971 -0.0005 12 7 2.5141 -1.7571 1.1410 13 6 3.1769 -2.9030 1.1980 14 6 3.5360 -3.5858 0.0752 15 6 3.1913 -3.0550 -1.1824 16 6 3.5268 -3.6999 -2.3835 17 9 4.2017 -4.8702 -2.3631 18 6 3.1699 -3.1316 -3.5724 19 6 2.4691 -1.9291 -3.6091 20 6 2.1285 -1.2777 -2.4606 21 6 2.4829 -1.8278 -1.2225 22 1 -0.3633 -1.0232 0.0958 23 1 -0.3633 0.5946 0.8383 24 1 -0.3634 0.4286 -0.9339 25 1 -0.3101 3.2501 -0.2862 26 1 3.4398 -3.3084 2.1639 27 1 4.0764 -4.5180 0.1484 28 1 3.4309 -3.6241 -4.4974 29 1 2.1947 -1.5031 -4.5628 30 1 1.5883 -0.3436 -2.5056 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799714.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:43 Heat of formation + Delta-G solvation = 46.477376 kcal Electronic energy + Delta-G solvation = -17294.944176 eV Core-core repulsion = 14391.986318 eV Total energy + Delta-G solvation = -2902.957858 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.72328 -40.24138 -36.92969 -35.73296 -32.21261 -31.03939 -30.18066 -28.60565 -26.16498 -24.33146 -23.34262 -22.64787 -20.62313 -18.00614 -17.63041 -16.79839 -16.53244 -15.58252 -15.47165 -15.01331 -14.48270 -14.15116 -13.83252 -13.73681 -12.88239 -12.77654 -12.50210 -12.14879 -11.53044 -11.46335 -11.31636 -10.94394 -10.88548 -10.63691 -10.29673 -10.02888 -9.45946 -9.05726 -8.79399 -8.64656 -7.45622 -7.35338 -5.90989 -3.34936 0.73079 1.22156 2.23680 3.32503 3.38470 3.39199 3.41908 4.19352 4.40363 4.49115 4.75513 4.85447 4.98557 5.24254 5.25667 5.47139 5.50081 5.64089 5.78996 6.05123 6.14421 6.35130 6.43606 6.50320 6.58702 6.75437 7.00950 7.15814 7.37427 7.59357 7.69854 8.16165 8.70114 9.01168 9.68273 9.99953 11.10339 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.030090 B = 0.007277 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.304751 B = 3847.059368 C = 4204.062468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.555 5.555 3 C -0.261 4.261 4 H 0.077 0.923 5 C 0.014 3.986 6 N -0.903 5.903 7 Si 0.911 3.089 8 H -0.281 1.281 9 H -0.288 1.288 10 H -0.282 1.282 11 C 0.468 3.532 12 N -0.515 5.515 13 C 0.107 3.893 14 C -0.197 4.197 15 C -0.042 4.042 16 C 0.076 3.924 17 F -0.141 7.141 18 C -0.128 4.128 19 C -0.131 4.131 20 C -0.048 4.048 21 C -0.103 4.103 22 H -0.002 1.002 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.257 0.743 26 H 0.145 0.855 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -9.617 -4.705 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.276 5.276 3 C -0.388 4.388 4 H 0.095 0.905 5 C -0.185 4.185 6 N -0.547 5.547 7 Si 0.740 3.260 8 H -0.207 1.207 9 H -0.213 1.213 10 H -0.208 1.208 11 C 0.226 3.774 12 N -0.227 5.227 13 C -0.040 4.040 14 C -0.217 4.217 15 C -0.048 4.048 16 C 0.057 3.943 17 F -0.120 7.120 18 C -0.148 4.148 19 C -0.149 4.149 20 C -0.067 4.067 21 C -0.110 4.110 22 H 0.017 0.983 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.162 0.838 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.274 -9.131 -3.844 10.434 hybrid contribution 0.894 0.145 -0.415 0.996 sum 4.168 -8.986 -4.259 10.782 Atomic orbital electron populations 1.21166 0.78908 0.94229 1.02857 1.41277 1.02926 0.98559 1.84819 1.19066 0.90839 0.81922 1.46988 0.90497 1.24812 0.95905 0.97938 0.99846 1.70165 1.08149 1.25909 1.50494 0.86237 0.78616 0.82211 0.78977 1.20742 1.21320 1.20787 1.18553 0.86162 0.86675 0.86047 1.67890 1.12503 1.10514 1.31817 1.22047 0.93461 0.90572 0.97881 1.21593 1.05518 1.02353 0.92274 1.18117 0.98761 0.94926 0.92971 1.17169 0.99218 0.84051 0.93842 1.91445 1.77960 1.45232 1.97344 1.20847 1.00249 0.97214 0.96499 1.20668 1.00259 0.94934 0.99057 1.21298 0.95584 0.99461 0.90404 1.19588 0.99994 0.94494 0.96906 0.98301 0.93284 0.92222 0.93213 0.83791 0.85160 0.85160 0.85165 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.14 8.96 59.85 0.54 4.68 16 2 N -0.56 -13.92 2.21 -122.07 -0.27 -14.19 16 3 C -0.26 -7.01 9.76 -15.09 -0.15 -7.15 16 4 H 0.08 2.08 7.88 -52.49 -0.41 1.66 16 5 C 0.01 0.36 5.32 -17.46 -0.09 0.27 16 6 N -0.90 -24.47 9.74 55.49 0.54 -23.93 16 7 Si 0.91 21.21 29.58 -169.99 -5.03 16.18 16 8 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.47 10.67 5.98 -155.19 -0.93 9.74 16 12 N -0.51 -11.33 10.34 -12.45 -0.13 -11.46 16 13 C 0.11 1.89 11.06 -17.98 -0.20 1.69 16 14 C -0.20 -3.28 9.70 -39.34 -0.38 -3.66 16 15 C -0.04 -0.75 5.75 -106.77 -0.61 -1.36 16 16 C 0.08 1.23 7.26 -39.39 -0.29 0.94 16 17 F -0.14 -2.15 16.76 2.25 0.04 -2.11 16 18 C -0.13 -1.81 9.93 -39.83 -0.40 -2.21 16 19 C -0.13 -1.93 9.95 -39.89 -0.40 -2.33 16 20 C -0.05 -0.87 9.56 -39.59 -0.38 -1.25 16 21 C -0.10 -2.07 5.75 -106.70 -0.61 -2.68 16 22 H 0.00 -0.04 7.90 -51.93 -0.41 -0.45 16 23 H 0.05 1.28 7.18 -51.92 -0.37 0.90 16 24 H 0.06 1.48 7.01 -51.93 -0.36 1.12 16 25 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 26 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.13 1.80 7.82 -52.49 -0.41 1.39 16 28 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 30 H 0.15 2.97 7.61 -52.48 -0.40 2.57 16 LS Contribution 266.80 15.07 4.02 4.02 Total: -1.00 -28.48 266.80 -7.50 -35.98 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -2.77 Total: -1.16 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.90 Total: -3.33 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.14 Total: -49.57 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.48 -7.50 -35.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799714.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.458 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds