Wall clock time and date at job start Sun Mar 29 2020 22:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36854 * 119.99923 * 2 1 4 4 H 1.07996 * 120.00008 * 180.43309 * 3 2 1 5 5 C 1.38828 * 119.99830 * 0.43555 * 3 2 1 6 6 N 1.31541 * 120.00025 * 344.17891 * 5 3 2 7 7 Si 1.86797 * 119.99942 * 164.18603 * 5 3 2 8 8 H 1.48497 * 109.47404 * 59.99493 * 7 5 3 9 9 H 1.48503 * 109.47468 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46963 * 299.99735 * 7 5 3 11 11 C 1.38229 * 120.00188 * 180.02562 * 2 1 3 12 12 N 1.32094 * 120.15049 * 268.48573 * 11 2 1 13 13 C 1.32507 * 122.63728 * 179.97438 * 12 11 2 14 14 C 1.36231 * 121.99588 * 359.97438 * 13 12 11 15 15 C 1.40792 * 118.86429 * 0.02562 * 14 13 12 16 16 C 1.40396 * 122.17192 * 179.97438 * 15 14 13 17 17 F 1.35106 * 120.28741 * 0.03347 * 16 15 14 18 18 C 1.36520 * 119.42469 * 180.30390 * 16 15 14 19 19 C 1.39229 * 120.93539 * 359.44388 * 18 16 15 20 20 C 1.36353 * 121.07457 * 0.56927 * 19 18 16 21 21 C 1.40041 * 119.59206 * 359.71819 * 20 19 18 22 22 H 1.09004 * 109.46855 * 185.35096 * 1 2 3 23 23 H 1.09007 * 109.46637 * 305.34694 * 1 2 3 24 24 H 1.08991 * 109.47638 * 65.35010 * 1 2 3 25 25 H 0.97003 * 120.00072 * 179.97438 * 6 5 3 26 26 H 1.07997 * 119.00136 * 180.02562 * 13 12 11 27 27 H 1.07999 * 120.56975 * 179.97438 * 14 13 12 28 28 H 1.07997 * 119.52992 * 179.73329 * 18 16 15 29 29 H 1.08001 * 119.45968 * 180.28811 * 19 18 16 30 30 H 1.08003 * 120.20249 * 179.74675 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1852 0.0000 4 1 3.2292 1.1852 -0.0071 5 6 1.4551 2.3874 0.0091 6 7 0.1751 2.4101 -0.2929 7 14 2.3389 3.9729 0.4502 8 1 3.4471 4.2057 -0.5105 9 1 1.3825 5.1071 0.3863 10 1 2.8900 3.8664 1.8251 11 6 2.1562 -1.1971 -0.0005 12 7 2.5141 -1.7571 1.1410 13 6 3.1769 -2.9030 1.1980 14 6 3.5360 -3.5858 0.0752 15 6 3.1913 -3.0550 -1.1824 16 6 3.5268 -3.6999 -2.3835 17 9 4.2017 -4.8702 -2.3631 18 6 3.1699 -3.1316 -3.5724 19 6 2.4691 -1.9291 -3.6091 20 6 2.1285 -1.2777 -2.4606 21 6 2.4829 -1.8278 -1.2225 22 1 -0.3633 -1.0232 0.0958 23 1 -0.3633 0.5946 0.8383 24 1 -0.3634 0.4286 -0.9339 25 1 -0.3101 3.2501 -0.2862 26 1 3.4398 -3.3084 2.1639 27 1 4.0764 -4.5180 0.1484 28 1 3.4309 -3.6241 -4.4974 29 1 2.1947 -1.5031 -4.5628 30 1 1.5883 -0.3436 -2.5056 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799714.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:43 Heat of formation + Delta-G solvation = 31.780104 kcal Electronic energy + Delta-G solvation = -17295.581497 eV Core-core repulsion = 14391.986318 eV Total energy + Delta-G solvation = -2903.595179 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.94525 -41.67996 -38.36067 -37.45308 -33.94839 -32.53593 -31.68528 -30.05160 -28.15316 -25.99622 -24.68823 -24.18397 -22.16611 -19.56081 -19.07535 -18.44654 -17.96544 -17.19235 -16.71474 -16.55451 -15.83008 -15.66713 -15.50226 -15.30459 -14.39425 -14.17903 -14.04387 -13.88064 -13.21320 -12.86814 -12.74623 -12.73695 -12.57016 -12.31536 -12.18011 -11.99131 -10.91653 -10.82079 -10.42958 -10.12723 -9.27091 -8.81602 -7.91855 -5.38470 -0.65192 -0.11815 0.83628 1.45071 1.49377 1.55736 2.06263 2.39247 2.94839 3.04685 3.12129 3.31174 3.60861 3.76343 3.93162 4.06618 4.18945 4.30383 4.43929 4.63923 4.77769 4.79134 5.04903 5.10852 5.20364 5.35558 5.44780 5.46526 5.64217 5.70640 5.87397 6.20802 6.99234 7.19592 7.75935 8.07336 9.08551 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.030090 B = 0.007277 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.304751 B = 3847.059368 C = 4204.062468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.567 5.567 3 C -0.271 4.271 4 H 0.066 0.934 5 C -0.032 4.032 6 N -0.925 5.925 7 Si 0.971 3.029 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.286 1.286 11 C 0.427 3.573 12 N -0.544 5.544 13 C 0.087 3.913 14 C -0.174 4.174 15 C -0.061 4.061 16 C 0.079 3.921 17 F -0.133 7.133 18 C -0.114 4.114 19 C -0.103 4.103 20 C -0.079 4.079 21 C -0.114 4.114 22 H 0.012 0.988 23 H 0.020 0.980 24 H 0.046 0.954 25 H 0.255 0.745 26 H 0.178 0.822 27 H 0.165 0.835 28 H 0.174 0.826 29 H 0.166 0.834 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.146 -11.459 -6.217 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.289 5.289 3 C -0.399 4.399 4 H 0.084 0.916 5 C -0.228 4.228 6 N -0.571 5.571 7 Si 0.798 3.202 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.212 1.212 11 C 0.186 3.814 12 N -0.257 5.257 13 C -0.058 4.058 14 C -0.193 4.193 15 C -0.068 4.068 16 C 0.060 3.940 17 F -0.111 7.111 18 C -0.134 4.134 19 C -0.121 4.121 20 C -0.099 4.099 21 C -0.120 4.120 22 H 0.031 0.969 23 H 0.039 0.961 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.195 0.805 27 H 0.183 0.817 28 H 0.191 0.809 29 H 0.184 0.816 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.861 -11.012 -5.359 13.176 hybrid contribution 0.500 0.505 -0.040 0.712 sum 5.361 -10.507 -5.400 12.973 Atomic orbital electron populations 1.20807 0.79398 0.94225 1.00814 1.41209 1.02923 0.99228 1.85514 1.19154 0.90531 0.83240 1.46966 0.91618 1.25496 0.96764 1.00444 1.00090 1.70291 1.09083 1.26217 1.51468 0.85306 0.77733 0.78874 0.78296 1.19893 1.20969 1.21232 1.18691 0.88490 0.86993 0.87237 1.67690 1.13341 1.12398 1.32233 1.22535 0.93670 0.89602 0.99998 1.21993 1.03329 1.02680 0.91340 1.18349 0.99154 0.94609 0.94648 1.17209 0.99006 0.84170 0.93665 1.91473 1.77703 1.44642 1.97296 1.21279 0.98209 0.96333 0.97539 1.21045 0.97620 0.94301 0.99112 1.21167 0.97760 0.99599 0.91402 1.19496 1.00823 0.95397 0.96329 0.96901 0.96095 0.93596 0.93513 0.80461 0.81714 0.80883 0.81634 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.75 8.96 127.77 1.14 10.89 16 2 N -0.57 -29.77 2.21 -540.12 -1.20 -30.96 16 3 C -0.27 -15.16 9.76 84.05 0.82 -14.34 16 4 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 5 C -0.03 -1.75 5.32 84.88 0.45 -1.30 16 6 N -0.93 -52.04 9.74 21.65 0.21 -51.83 16 7 Si 0.97 44.60 29.58 68.60 2.03 46.62 16 8 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 C 0.43 20.05 5.98 133.96 0.80 20.85 16 12 N -0.54 -24.33 10.34 -193.30 -2.00 -26.33 16 13 C 0.09 2.99 11.06 84.12 0.93 3.92 16 14 C -0.17 -5.36 9.70 22.43 0.22 -5.14 16 15 C -0.06 -2.09 5.75 -21.26 -0.12 -2.21 16 16 C 0.08 2.23 7.26 22.39 0.16 2.40 16 17 F -0.13 -3.45 16.76 44.97 0.75 -2.70 16 18 C -0.11 -2.70 9.93 22.11 0.22 -2.48 16 19 C -0.10 -2.72 9.95 22.07 0.22 -2.50 16 20 C -0.08 -2.89 9.56 22.27 0.21 -2.67 16 21 C -0.11 -4.60 5.75 -21.21 -0.12 -4.72 16 22 H 0.01 0.58 7.90 -2.38 -0.02 0.56 16 23 H 0.02 1.14 7.18 -2.38 -0.02 1.12 16 24 H 0.05 2.42 7.01 -2.39 -0.02 2.40 16 25 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 26 H 0.18 4.65 8.06 -2.91 -0.02 4.63 16 27 H 0.17 3.87 7.82 -2.91 -0.02 3.85 16 28 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 29 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 30 H 0.12 5.12 7.61 -2.91 -0.02 5.10 16 Total: -1.00 -64.07 266.80 5.89 -58.18 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.16 Total: 4.32 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 4.94 Total: 2.70 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -2.98 Total: -109.12 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.75 Total: -2.70 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -64.07 5.89 -58.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799714.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.957 kcal (2) G-P(sol) polarization free energy of solvation -64.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds