Wall clock time and date at job start Sun Mar 29 2020 22:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36899 * 120.00357 * 2 1 4 4 H 1.07996 * 119.99895 * 204.38941 * 3 2 1 5 5 C 1.38820 * 119.99682 * 24.38840 * 3 2 1 6 6 N 1.31565 * 120.00023 * 10.51505 * 5 3 2 7 7 Si 1.86791 * 120.00025 * 190.51037 * 5 3 2 8 8 H 1.48505 * 109.47020 * 84.93893 * 7 5 3 9 9 H 1.48498 * 109.47307 * 204.94020 * 7 5 3 10 10 H 1.48496 * 109.47433 * 324.94056 * 7 5 3 11 11 C 1.38815 * 119.99976 * 180.02562 * 2 1 3 12 12 C 1.39352 * 120.05916 * 185.02408 * 11 2 1 13 13 N 1.31983 * 120.02640 * 179.72469 * 12 11 2 14 14 C 1.32155 * 120.15419 * 0.50234 * 13 12 11 15 15 C 1.38996 * 120.11603 * 359.49541 * 14 13 12 16 16 N 1.39833 * 120.01664 * 180.27337 * 15 14 13 17 17 C 1.34810 * 126.85174 * 179.70960 * 16 15 14 18 18 N 1.30812 * 108.02217 * 179.86964 * 17 16 15 19 19 C 1.33296 * 109.84638 * 0.40881 * 18 17 16 20 20 N 1.30716 * 109.01788 * 359.74309 * 19 18 17 21 21 N 1.32612 * 119.96842 * 0.25337 * 15 14 13 22 22 H 1.08997 * 109.47112 * 274.25456 * 1 2 3 23 23 H 1.08998 * 109.46999 * 34.25323 * 1 2 3 24 24 H 1.09002 * 109.46974 * 154.25526 * 1 2 3 25 25 H 0.96995 * 119.99869 * 180.02562 * 6 5 3 26 26 H 1.08004 * 119.98649 * 359.97276 * 12 11 2 27 27 H 1.08008 * 119.93890 * 179.76523 * 14 13 12 28 28 H 1.08005 * 125.98126 * 359.97438 * 17 16 15 29 29 H 1.08001 * 125.49130 * 179.73125 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1855 0.0000 4 1 3.1572 1.2272 -0.3862 5 6 1.5483 2.3341 0.4964 6 7 0.4109 2.2504 1.1523 7 14 2.3543 3.9985 0.2333 8 1 1.9596 4.5354 -1.0938 9 1 1.9135 4.9358 1.2975 10 1 3.8306 3.8477 0.2871 11 6 2.1590 -1.2022 -0.0005 12 6 3.5485 -1.2060 0.1051 13 7 4.2074 -2.3496 0.1100 14 6 3.5532 -3.4931 0.0049 15 6 2.1673 -3.4965 -0.1008 16 7 1.4768 -4.7079 -0.2061 17 6 0.1426 -4.8717 -0.3093 18 7 -0.1027 -6.1542 -0.3889 19 6 1.0401 -6.8379 -0.3314 20 7 2.0345 -5.9969 -0.2194 21 7 1.5001 -2.3504 -0.1012 22 1 -0.3633 0.0762 1.0248 23 1 -0.3633 0.8494 -0.5784 24 1 -0.3633 -0.9257 -0.4464 25 1 -0.0093 3.0529 1.4989 26 1 4.0862 -0.2729 0.1870 27 1 4.0962 -4.4267 0.0054 28 1 -0.5943 -4.0823 -0.3253 29 1 1.1300 -7.9135 -0.3708 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166802006.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:51 Heat of formation + Delta-G solvation = 167.007178 kcal Electronic energy + Delta-G solvation = -17002.685520 eV Core-core repulsion = 14157.166939 eV Total energy + Delta-G solvation = -2845.518581 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.092 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.06640 -39.99221 -36.67427 -34.27908 -33.01358 -31.62916 -30.93862 -28.96903 -26.99089 -24.91210 -24.22695 -22.41237 -21.52877 -20.86689 -18.63974 -17.21708 -16.60695 -16.02076 -15.73907 -15.51137 -14.97063 -14.42952 -14.17734 -13.96114 -13.57051 -12.90318 -12.32624 -12.01976 -11.73236 -11.53305 -11.18995 -11.04063 -10.84610 -10.65314 -10.52080 -10.33216 -10.03632 -9.72142 -9.46083 -8.70025 -8.38584 -7.22841 -6.77520 -4.24693 1.06459 2.11494 2.25203 2.42377 2.96398 2.98695 3.01874 3.04695 3.68647 4.28172 4.40614 4.45016 4.75097 4.81916 5.05489 5.38994 5.47160 5.68109 6.01901 6.20487 6.38312 6.45310 6.49626 6.64930 6.87242 6.98197 7.01216 7.20890 7.56162 7.83023 8.15135 8.29707 8.66102 8.79333 9.17926 10.17124 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.044180 B = 0.005737 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.612381 B = 4879.042813 C = 5446.738450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.387 5.387 3 C -0.317 4.317 4 H 0.108 0.892 5 C 0.039 3.961 6 N -0.852 5.852 7 Si 0.939 3.061 8 H -0.271 1.271 9 H -0.279 1.279 10 H -0.263 1.263 11 C 0.331 3.669 12 C -0.022 4.022 13 N -0.389 5.389 14 C -0.087 4.087 15 C 0.365 3.635 16 N -0.314 5.314 17 C 0.286 3.714 18 N -0.551 5.551 19 C 0.198 3.802 20 N -0.307 5.307 21 N -0.559 5.559 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.046 0.954 25 H 0.278 0.722 26 H 0.164 0.836 27 H 0.153 0.847 28 H 0.223 0.777 29 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 -5.321 -1.980 5.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.072 5.072 3 C -0.446 4.446 4 H 0.125 0.875 5 C -0.170 4.170 6 N -0.485 5.485 7 Si 0.763 3.237 8 H -0.197 1.197 9 H -0.204 1.204 10 H -0.187 1.187 11 C 0.084 3.916 12 C -0.199 4.199 13 N -0.100 5.100 14 C -0.249 4.249 15 C 0.130 3.870 16 N -0.099 5.099 17 C -0.010 4.010 18 N -0.278 5.278 19 C -0.105 4.105 20 N -0.134 5.134 21 N -0.290 5.290 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.182 0.818 27 H 0.171 0.829 28 H 0.240 0.760 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.320 -5.201 -1.838 5.526 hybrid contribution -0.075 1.026 -0.018 1.029 sum -0.395 -4.176 -1.856 4.587 Atomic orbital electron populations 1.21570 0.79174 0.99508 1.02439 1.42668 1.05621 1.00953 1.57939 1.19822 1.01395 0.83532 1.39839 0.87496 1.25567 0.96386 1.00881 0.94175 1.70070 1.16797 1.30885 1.30732 0.85730 0.79765 0.79683 0.78484 1.19675 1.20373 1.18747 1.18886 0.89768 0.85010 0.97895 1.22851 0.90969 0.96870 1.09244 1.68075 1.38341 0.97697 1.05932 1.22167 0.89213 0.97361 1.16132 1.18290 0.89016 0.82399 0.97265 1.47491 1.05856 1.04509 1.52059 1.26323 0.85896 0.95355 0.93435 1.70670 1.29049 1.02566 1.25565 1.26156 0.85395 1.01139 0.97815 1.78125 1.22424 0.86519 1.26291 1.66744 1.39306 0.96177 1.26819 0.91640 0.91694 0.93496 0.91135 0.81845 0.82923 0.76041 0.76258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.50 8.79 59.85 0.53 3.03 15 2 N -0.39 -8.89 3.11 -122.33 -0.38 -9.27 15 3 C -0.32 -7.31 8.90 -15.07 -0.13 -7.44 15 4 H 0.11 2.33 6.37 -52.49 -0.33 1.99 15 5 C 0.04 0.88 5.14 -17.45 -0.09 0.79 15 6 N -0.85 -20.06 10.66 55.49 0.59 -19.47 15 7 Si 0.94 17.57 29.57 -169.99 -5.03 12.54 15 8 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 9 H -0.28 -5.25 7.11 56.52 0.40 -4.85 15 10 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 11 C 0.33 7.41 7.33 -154.81 -1.14 6.27 15 12 C -0.02 -0.46 10.42 -17.07 -0.18 -0.64 15 13 N -0.39 -8.22 10.48 -12.68 -0.13 -8.35 15 14 C -0.09 -1.76 10.85 -17.13 -0.19 -1.94 15 15 C 0.36 7.38 7.56 -154.07 -1.17 6.22 15 16 N -0.31 -5.70 3.81 -13.26 -0.05 -5.75 15 17 C 0.29 4.62 12.28 -90.33 -1.11 3.51 15 18 N -0.55 -8.57 11.19 -15.73 -0.18 -8.75 15 19 C 0.20 2.78 13.03 -91.76 -1.20 1.58 15 20 N -0.31 -5.14 12.04 29.30 0.35 -4.79 15 21 N -0.56 -11.89 8.74 -11.27 -0.10 -11.99 15 22 H 0.07 1.49 7.37 -51.93 -0.38 1.10 15 23 H 0.06 1.41 7.31 -51.93 -0.38 1.03 15 24 H 0.05 0.93 7.19 -51.93 -0.37 0.55 15 25 H 0.28 6.17 8.31 -40.82 -0.34 5.83 15 26 H 0.16 3.32 6.30 -52.48 -0.33 2.99 15 27 H 0.15 2.88 7.73 -52.48 -0.41 2.47 15 28 H 0.22 3.10 8.06 -52.48 -0.42 2.67 15 29 H 0.22 2.01 8.06 -52.49 -0.42 1.59 15 LS Contribution 261.91 15.07 3.95 3.95 Total: -1.00 -26.38 261.91 -7.83 -34.20 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -2.19 Total: 6.30 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: -4.67 Total: 11.37 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: 0.11 Total: -68.36 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.38 -7.83 -34.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802006.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.210 kcal (2) G-P(sol) polarization free energy of solvation -26.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds